MGE detailed information
MGE type: Conjugative plasmid MGE length: 97743 bp
Accession: NZ_CP043828 Location: 1..97743 Organism: Escherichia coli strain RM8082 Replicon: plasmid p2RM8082
Accession: NZ_CP043828 Location: 1..97743 Organism: Escherichia coli strain RM8082 Replicon: plasmid p2RM8082
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F1745_RS26325 (65) | 65..1219 | + | 1155 | WP_001139958.1 | site-specific integrase | - |
| F1745_RS26330 (1370) | 1370..2194 | + | 825 | WP_001238938.1 | conjugal transfer protein TraE | - |
| F1745_RS26335 (2279) | 2279..3481 | + | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| F1745_RS26340 (3541) | 3541..4125 | + | 585 | WP_000977523.1 | histidine phosphatase family protein | - |
| F1745_RS26345 (4520) | 4520..4978 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| F1745_RS26350 (4975) | 4975..5793 | + | 819 | WP_001455305.1 | hypothetical protein | VF |
| F1745_RS26355 (5790) | 5790..6938 | + | 1149 | WP_001024972.1 | putative protein YggR | VF |
| F1745_RS26360 (6935) | 6935..7225 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| F1745_RS26365 (7240) | 7240..7791 | + | 552 | WP_000014584.1 | Phospholipase D | VF |
| F1745_RS26370 (7881) | 7881..11646 | + | 3766 | Protein_9 | DUF5710 domain-containing protein | - |
| F1745_RS26375 (11664) | 11664..12011 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| F1745_RS26380 (12008) | 12008..12700 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| F1745_RS26385 (12711) | 12711..13694 | + | 984 | WP_001191878.1 | hypothetical protein | VF |
| F1745_RS26390 (13697) | 13697..14986 | + | 1290 | WP_001271996.1 | conjugal transfer protein TraO | - |
| F1745_RS26395 (14986) | 14986..15690 | + | 705 | WP_238014298.1 | IncI1-type conjugal transfer protein TraP | - |
| F1745_RS26400 (15690) | 15690..16217 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| F1745_RS26405 (16268) | 16268..16672 | + | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| F1745_RS26410 (16736) | 16736..16924 | + | 189 | WP_001277252.1 | putative conjugal transfer protein TraS | - |
| F1745_RS26415 (16908) | 16908..17708 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| F1745_RS26420 (17798) | 17798..20842 | + | 3045 | WP_238014312.1 | IncI1-type conjugal transfer protein TraU | - |
| F1745_RS26425 (20842) | 20842..21456 | + | 615 | WP_000337400.1 | IncI1-type conjugal transfer protein TraV | - |
| F1745_RS26430 (21423) | 21423..22625 | + | 1203 | WP_001189154.1 | IncI1-type conjugal transfer protein TraW | - |
| F1745_RS26435 (22654) | 22654..23238 | + | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| F1745_RS26440 (23335) | 23335..25503 | + | 2169 | WP_000698360.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| F1745_RS26445 (25579) | 25579..26193 | + | 615 | WP_000578649.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| F1745_RS26450 (26291) | 26291..26500 | + | 210 | WP_238014315.1 | hemolysin expression modulator Hha | - |
| F1745_RS26455 (26709) | 26709..26885 | + | 177 | WP_001054900.1 | hypothetical protein | - |
| - (27371) | 27371..27422 | + | 52 | NuclAT_2 | - | - |
| - (27371) | 27371..27422 | + | 52 | NuclAT_2 | - | - |
| - (27371) | 27371..27422 | + | 52 | NuclAT_2 | - | - |
| - (27371) | 27371..27422 | + | 52 | NuclAT_2 | - | - |
| F1745_RS26460 (27809) | 27809..28060 | + | 252 | WP_001291965.1 | hypothetical protein | - |
| F1745_RS26465 (28132) | 28132..28284 | - | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| - (28334) | 28334..28396 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (28334) | 28334..28396 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (28334) | 28334..28396 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (28334) | 28334..28396 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| F1745_RS26470 (28605) | 28605..29690 | + | 1086 | WP_000080543.1 | protein finQ | - |
| - (29757) | 29757..29817 | + | 61 | NuclAT_1 | - | - |
| - (29757) | 29757..29817 | + | 61 | NuclAT_1 | - | - |
| - (29757) | 29757..29817 | + | 61 | NuclAT_1 | - | - |
| - (29757) | 29757..29817 | + | 61 | NuclAT_1 | - | - |
| F1745_RS26475 (29997) | 29997..31205 | + | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| F1745_RS26480 (31224) | 31224..32294 | + | 1071 | WP_000151592.1 | IncI1-type conjugal transfer protein TrbB | - |
| F1745_RS26485 (32287) | 32287..34578 | + | 2292 | WP_238014318.1 | F-type conjugative transfer protein TrbC | - |
| F1745_RS26490 (35636) | 35636..35998 | + | 363 | WP_085004988.1 | CPBP family intramembrane metalloprotease | - |
| F1745_RS26495 (36101) | 36101..37354 | + | 1254 | WP_001685252.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| F1745_RS26500 (37354) | 37354..39542 | + | 2189 | Protein_35 | peptidase domain-containing ABC transporter | - |
| F1745_RS26505 (39592) | 39592..40164 | - | 573 | WP_000332079.1 | hypothetical protein | - |
| F1745_RS26510 (40190) | 40190..42889 | - | 2700 | WP_181199790.1 | Protein TraI | Relaxase |
| F1745_RS26515 (42900) | 42900..43232 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| F1745_RS26520 (43466) | 43466..43801 | + | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| F1745_RS26525 (43887) | 43887..44735 | - | 849 | WP_001077032.1 | DUF4942 domain-containing protein | - |
| F1745_RS26530 (44979) | 44979..45206 | + | 228 | WP_001455299.1 | hypothetical protein | - |
| F1745_RS26535 (45315) | 45315..45566 | + | 252 | WP_000148291.1 | helix-turn-helix transcriptional regulator | - |
| F1745_RS26540 (45597) | 45597..45791 | - | 195 | WP_000150318.1 | hypothetical protein | VF |
| F1745_RS26545 (45853) | 45853..46731 | - | 879 | WP_000038331.1 | Recombination-promoting nuclease RpnA | VF |
| F1745_RS26550 (46796) | 46796..47062 | - | 267 | WP_001247862.1 | hypothetical protein | - |
| F1745_RS26555 (47156) | 47156..47590 | - | 435 | WP_000218858.1 | hypothetical protein | - |
| F1745_RS26560 (47895) | 47895..48179 | + | 285 | WP_021013251.1 | hypothetical protein | - |
| F1745_RS26565 (48319) | 48319..48819 | - | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| F1745_RS26570 (49282) | 49282..49878 | - | 597 | WP_000978012.1 | hypothetical protein | - |
| F1745_RS26575 (49875) | 49875..50594 | - | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| F1745_RS26580 (50591) | 50591..51025 | - | 435 | WP_000845898.1 | conjugation system SOS inhibitor PsiB | - |
| F1745_RS26585 (51080) | 51080..53037 | - | 1958 | Protein_52 | ParB/RepB/Spo0J family partition protein | - |
| F1745_RS26590 (53099) | 53099..53332 | - | 234 | WP_001042947.1 | DUF905 domain-containing protein | - |
| F1745_RS26595 (53389) | 53389..53916 | - | 528 | WP_238014253.1 | single-stranded DNA-binding protein | - |
| F1745_RS26600 (54300) | 54300..54614 | - | 315 | WP_001434357.1 | hypothetical protein | - |
| F1745_RS26605 (54686) | 54686..54877 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| F1745_RS26610 (54874) | 54874..55296 | - | 423 | WP_061357973.1 | DUF1380 family protein | - |
| F1745_RS26615 (55343) | 55343..55768 | - | 426 | WP_238014255.1 | antirestriction protein | - |
| F1745_RS26620 (55767) | 55767..56069 | + | 303 | WP_238014257.1 | antirestriction protein | - |
| F1745_RS26625 (56180) | 56180..56956 | - | 777 | WP_047089256.1 | hypothetical protein | - |
| F1745_RS26630 (57002) | 57002..57436 | - | 435 | WP_000274500.1 | DUF1380 family protein | - |
| F1745_RS26635 (57450) | 57450..57671 | - | 222 | WP_001104881.1 | hypothetical protein | - |
| F1745_RS26640 (57672) | 57672..58355 | - | 684 | WP_000086147.1 | DNA methylase | - |
| F1745_RS26645 (58431) | 58431..58742 | - | 312 | WP_031942433.1 | hypothetical protein | - |
| F1745_RS26650 (58739) | 58739..59641 | - | 903 | WP_238014259.1 | DUF1281 domain-containing protein | - |
| F1745_RS26655 (59717) | 59717..61440 | - | 1724 | Protein_66 | group II intron reverse transcriptase/maturase | - |
| F1745_RS26660 (62463) | 62463..62711 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| F1745_RS26665 (62708) | 62708..63145 | + | 438 | WP_238014261.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| F1745_RS26670 (63145) | 63145..64418 | + | 1274 | Protein_69 | Y-family DNA polymerase | - |
| F1745_RS26675 (64420) | 64420..64836 | - | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| F1745_RS26680 (64829) | 64829..65809 | - | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| F1745_RS26685 (66223) | 66223..66531 | - | 309 | WP_000030199.1 | hypothetical protein | - |
| F1745_RS26690 (66618) | 66618..67262 | - | 645 | WP_001144036.1 | ParA family protein | - |
| F1745_RS26695 (67442) | 67442..68221 | - | 780 | WP_001164198.1 | site-specific integrase | - |
| F1745_RS26700 (68223) | 68223..68636 | - | 414 | WP_032082921.1 | hypothetical protein | - |
| F1745_RS26705 (69205) | 69205..69459 | + | 255 | WP_000343103.1 | hypothetical protein | - |
| F1745_RS26710 (69459) | 69459..70049 | + | 591 | WP_000194572.1 | hypothetical protein | - |
| F1745_RS26715 (70069) | 70069..70416 | - | 348 | WP_001582578.1 | DUF6404 family protein | - |
| F1745_RS26720 (70670) | 70670..70879 | + | 210 | WP_071590427.1 | colicin E1 family microcin immunity protein | - |
| F1745_RS26725 (70901) | 70901..72661 | - | 1761 | WP_238014263.1 | colicin Ia central receptor-binding domain-containing protein | - |
| F1745_RS26730 (73049) | 73049..74395 | - | 1347 | WP_001132032.1 | protein YagA | - |
| F1745_RS26735 (74748) | 74748..75350 | + | 603 | WP_000517695.1 | ProQ/FINO family protein | - |
| F1745_RS26740 (75406) | 75406..75900 | + | 495 | WP_097481107.1 | hypothetical protein | - |
| F1745_RS26745 (75900) | 75900..76166 | + | 267 | WP_000627829.1 | hypothetical protein | - |
| F1745_RS26750 (76436) | 76436..76639 | - | 204 | Protein_85 | hypothetical protein | - |
| F1745_RS26755 (76745) | 76745..77020 | - | 276 | WP_001582571.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| F1745_RS26760 (77020) | 77020..77304 | - | 285 | WP_001178089.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| F1745_RS26765 (78425) | 78425..79456 | - | 1032 | WP_000907861.1 | plasmid replication initiator RepA | - |
| F1745_RS26770 (80462) | 80462..80692 | + | 231 | WP_228772074.1 | ash family protein | - |
| F1745_RS26775 (80610) | 80610..80897 | + | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| F1745_RS26780 (81339) | 81339..81872 | + | 534 | WP_001306770.1 | transcription termination/antitermination NusG family protein | - |
| F1745_RS26785 (82125) | 82125..82808 | + | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| F1745_RS26790 (82981) | 82981..83532 | + | 552 | WP_000744646.1 | hypothetical protein | - |
| F1745_RS26795 (83694) | 83694..83948 | + | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| F1745_RS26800 (84115) | 84115..84411 | + | 297 | WP_000494780.1 | hypothetical protein | - |
| F1745_RS26805 (85330) | 85330..86397 | + | 1068 | WP_238014266.1 | hypothetical protein | VF |
| F1745_RS26810 (86397) | 86397..86834 | + | 438 | WP_000539806.1 | hypothetical protein | VF |
| F1745_RS26815 (86848) | 86848..88530 | + | 1683 | WP_042966610.1 | Outer membrane lipoprotein BfpB | VF |
| F1745_RS26820 (88523) | 88523..89817 | + | 1295 | Protein_99 | type 4b pilus protein PilO2 | - |
| F1745_RS26825 (89804) | 89804..90256 | + | 453 | WP_001247337.1 | hypothetical protein | VF |
| F1745_RS26830 (90267) | 90267..91820 | + | 1554 | WP_000362206.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| F1745_RS26835 (91833) | 91833..92918 | + | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| F1745_RS26840 (92935) | 92935..93549 | + | 615 | WP_000908226.1 | hypothetical protein | VF |
| F1745_RS26845 (93559) | 93559..94119 | + | 561 | WP_238014268.1 | hypothetical protein | VF |
| F1745_RS26850 (94104) | 94104..94760 | + | 657 | WP_001193549.1 | hypothetical protein | VF |
| F1745_RS26855 (94748) | 94748..96031 | + | 1284 | WP_238014270.1 | hypothetical protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|