MGE detailed information
MGE type: Conjugative plasmid MGE length: 72276 bp
Accession: NZ_CP043289 Location: 1..72276 Organism: Escherichia coli strain WCHEC025985 Replicon: plasmid p2_025985
Accession: NZ_CP043289 Location: 1..72276 Organism: Escherichia coli strain WCHEC025985 Replicon: plasmid p2_025985
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYK42_RS25485 (1) | 1..858 | + | 858 | WP_016240488.1 | incFII family plasmid replication initiator RepA | - |
| FYK42_RS25490 (1886) | 1886..2194 | - | 309 | Protein_1 | IS91 family transposase ISSbo1 | Transposase |
| FYK42_RS25495 (2387) | 2387..2485 | + | 99 | WP_137491101.1 | transposase | - |
| FYK42_RS25500 (2635) | 2635..2892 | - | 258 | WP_167791825.1 | hypothetical protein | - |
| FYK42_RS25505 (2922) | 2922..3692 | - | 771 | WP_000712166.1 | molybdopterin-dependent oxidoreductase | - |
| FYK42_RS25510 (3703) | 3703..4302 | - | 600 | WP_001177183.1 | cytochrome b/b6 domain-containing protein | - |
| FYK42_RS25515 (4444) | 4444..5166 | + | 723 | WP_001057737.1 | Transcriptional regulatory protein WalR | VF |
| FYK42_RS25520 (5163) | 5163..6635 | + | 1473 | WP_000621194.1 | ATP-binding protein | - |
| FYK42_RS25525 (7013) | 7013..7180 | - | 168 | Protein_8 | IS110 family transposase | - |
| FYK42_RS25530 (7234) | 7234..7938 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| FYK42_RS25535 (8073) | 8073..8168 | + | 96 | WP_013362819.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| FYK42_RS25540 (8294) | 8294..9031 | + | 738 | WP_013362818.1 | rRNA adenine N-6-methyltransferase | ARG |
| FYK42_RS25545 (9794) | 9794..10491 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| FYK42_RS25550 (10617) | 10617..10820 | + | 204 | Protein_13 | hypothetical protein | - |
| FYK42_RS25555 (11021) | 11021..11371 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| FYK42_RS25560 (11374) | 11374..12336 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| FYK42_RS25565 (12483) | 12483..12776 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| FYK42_RS25570 (12853) | 12853..13536 | + | 684 | WP_000085883.1 | DNA methylase | - |
| FYK42_RS25575 (13537) | 13537..13758 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| FYK42_RS25580 (13772) | 13772..14206 | + | 435 | WP_241408139.1 | DUF1380 family protein | - |
| FYK42_RS25585 (14251) | 14251..15021 | + | 771 | WP_015058993.1 | hypothetical protein | - |
| FYK42_RS25590 (15434) | 15434..15859 | + | 426 | WP_001198891.1 | antirestriction protein | - |
| FYK42_RS25595 (15906) | 15906..16328 | + | 423 | WP_000271739.1 | DUF1380 family protein | - |
| FYK42_RS25600 (16325) | 16325..16516 | + | 192 | WP_001027511.1 | hypothetical protein | - |
| FYK42_RS25605 (16836) | 16836..18503 | - | 1668 | WP_012372796.1 | group II intron reverse transcriptase/maturase | - |
| FYK42_RS25610 (19138) | 19138..19386 | - | 249 | WP_071587243.1 | hypothetical protein | - |
| FYK42_RS25615 (19902) | 19902..20132 | + | 231 | WP_000218644.1 | hypothetical protein | - |
| FYK42_RS25620 (20184) | 20184..21545 | + | 1362 | WP_025746315.1 | DUF3560 domain-containing protein | - |
| FYK42_RS25625 (21592) | 21592..22155 | + | 564 | WP_016240496.1 | class I SAM-dependent methyltransferase | - |
| FYK42_RS25630 (22241) | 22241..22708 | - | 468 | Protein_29 | hypothetical protein | - |
| FYK42_RS25635 (23010) | 23010..23537 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| FYK42_RS25640 (23595) | 23595..23828 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| FYK42_RS25645 (23889) | 23889..25853 | + | 1965 | WP_117389470.1 | ParB/RepB/Spo0J family partition protein | - |
| FYK42_RS25650 (25922) | 25922..26356 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| FYK42_RS25655 (26353) | 26353..27115 | + | 763 | Protein_34 | plasmid SOS inhibition protein A | - |
| FYK42_RS25660 (27093) | 27093..27272 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| - (27084) | 27084..27308 | + | 225 | NuclAT_0 | - | - |
| - (27084) | 27084..27308 | + | 225 | NuclAT_0 | - | - |
| - (27084) | 27084..27308 | + | 225 | NuclAT_0 | - | - |
| - (27084) | 27084..27308 | + | 225 | NuclAT_0 | - | - |
| FYK42_RS25665 (27294) | 27294..27443 | + | 150 | Protein_36 | plasmid maintenance protein Mok | - |
| FYK42_RS25670 (27385) | 27385..27510 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| FYK42_RS25675 (27811) | 27811..28107 | - | 297 | Protein_38 | hypothetical protein | - |
| FYK42_RS25680 (28407) | 28407..28703 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| FYK42_RS25685 (28814) | 28814..29635 | + | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| FYK42_RS25690 (29932) | 29932..30522 | - | 591 | WP_000252683.1 | hypothetical protein | VF |
| FYK42_RS25695 (30855) | 30855..31238 | + | 384 | WP_001151529.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| FYK42_RS25700 (31430) | 31430..32077 | + | 648 | WP_000332523.1 | transcriptional regulator TraJ family protein | - |
| FYK42_RS25705 (32197) | 32197..32424 | + | 228 | WP_000589556.1 | conjugal transfer relaxosome protein TraY | - |
| FYK42_RS25710 (32458) | 32458..32820 | + | 363 | WP_012881131.1 | type IV conjugative transfer system pilin TraA | - |
| FYK42_RS25715 (32835) | 32835..33146 | + | 312 | WP_000012100.1 | type IV conjugative transfer system protein TraL | - |
| FYK42_RS25720 (33168) | 33168..33734 | + | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| FYK42_RS25725 (33721) | 33721..34449 | + | 729 | WP_001230769.1 | type-F conjugative transfer system secretin TraK | - |
| FYK42_RS25730 (34449) | 34449..35876 | + | 1428 | WP_012881130.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| FYK42_RS25735 (35866) | 35866..36456 | + | 591 | WP_241408140.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| FYK42_RS25740 (36443) | 36443..36763 | + | 321 | WP_012881128.1 | conjugal transfer protein TrbD | - |
| FYK42_RS25745 (36760) | 36760..37275 | + | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| FYK42_RS25750 (37410) | 37410..37631 | + | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| FYK42_RS25755 (37624) | 37624..38100 | + | 477 | WP_012881127.1 | hypothetical protein | - |
| FYK42_RS25760 (38199) | 38199..38417 | + | 219 | WP_000556745.1 | hypothetical protein | - |
| FYK42_RS25765 (38445) | 38445..38792 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| FYK42_RS25770 (38918) | 38918..41548 | + | 2631 | WP_000069772.1 | type IV secretion system protein TraC | - |
| FYK42_RS25775 (41545) | 41545..41931 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| FYK42_RS25780 (41928) | 41928..42560 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| FYK42_RS25785 (42557) | 42557..43549 | + | 993 | WP_000830849.1 | conjugal transfer pilus assembly protein TraU | - |
| FYK42_RS25790 (43579) | 43579..43884 | + | 306 | WP_000224418.1 | hypothetical protein | - |
| FYK42_RS25795 (43893) | 43893..44531 | + | 639 | WP_012881126.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| FYK42_RS25800 (44528) | 44528..46378 | + | 1851 | WP_241408138.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| FYK42_RS25805 (46405) | 46405..46662 | + | 258 | WP_000864353.1 | conjugal transfer protein TrbE | - |
| FYK42_RS25810 (46655) | 46655..47398 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| FYK42_RS25815 (47412) | 47412..47753 | + | 342 | WP_000556795.1 | conjugal transfer protein TrbA | - |
| FYK42_RS25820 (47734) | 47734..48069 | - | 336 | WP_000736414.1 | hypothetical protein | - |
| FYK42_RS25825 (48150) | 48150..48434 | + | 285 | WP_000624107.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| FYK42_RS25830 (48421) | 48421..48966 | + | 546 | WP_000059830.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| FYK42_RS25835 (48896) | 48896..49243 | + | 348 | WP_011666494.1 | P-type conjugative transfer protein TrbJ | - |
| FYK42_RS25840 (49224) | 49224..49616 | + | 393 | WP_000659962.1 | F-type conjugal transfer protein TrbF | - |
| FYK42_RS25845 (49603) | 49603..50976 | + | 1374 | WP_000944331.1 | conjugal transfer pilus assembly protein TraH | - |
| FYK42_RS25850 (50973) | 50973..53129 | + | 2157 | Protein_73 | conjugal transfer mating-pair stabilization protein TraG | - |
| FYK42_RS25855 (53319) | 53319..54860 | + | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| FYK42_RS25860 (54875) | 54875..55621 | + | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| FYK42_RS25865 (55707) | 55707..56384 | + | 678 | Protein_76 | conjugal transfer protein TraG | - |
| FYK42_RS25870 (56381) | 56381..56890 | + | 510 | WP_000628111.1 | conjugal transfer entry exclusion protein TraS | - |
| FYK42_RS25875 (56904) | 56904..57635 | + | 732 | WP_012881123.1 | conjugal transfer complement resistance protein TraT | - |
| FYK42_RS25880 (57838) | 57838..58575 | + | 738 | WP_012881122.1 | hypothetical protein | - |
| FYK42_RS25885 (58626) | 58626..60860 | + | 2235 | WP_123908718.1 | type IV conjugative transfer system coupling protein TraD | - |
| FYK42_RS25890 (60860) | 60860..66130 | + | 5271 | WP_117389472.1 | Multifunctional conjugation protein TraI | Relaxase |
| FYK42_RS25895 (66150) | 66150..66896 | + | 747 | WP_059338983.1 | conjugal transfer pilus acetylase TraX | - |
| FYK42_RS25900 (66955) | 66955..67815 | + | 861 | WP_000704523.1 | putative protein YcjY | VF |
| FYK42_RS25905 (67918) | 67918..68478 | + | 561 | WP_000139321.1 | fertility inhibition protein FinO | - |
| FYK42_RS25910 (68607) | 68607..68819 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| FYK42_RS25915 (69064) | 69064..69525 | + | 462 | WP_001233838.1 | thermonuclease family protein | - |
| FYK42_RS25920 (69571) | 69571..69780 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| FYK42_RS25925 (69818) | 69818..70408 | + | 591 | WP_033807967.1 | DUF2726 domain-containing protein | - |
| FYK42_RS25930 (70563) | 70563..71036 | + | 474 | WP_016240489.1 | hypothetical protein | - |
| - (71179) | 71179..71238 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (71179) | 71179..71238 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (71179) | 71179..71238 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (71179) | 71179..71238 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| FYK42_RS25935 (71283) | 71283..71432 | + | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| FYK42_RS25940 (71717) | 71717..71965 | + | 249 | WP_000083839.1 | replication regulatory protein RepA | - |
| FYK42_RS25945 (72080) | 72080..72264 | + | 185 | Protein_92 | protein CopA/IncA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|