MGE detailed information
MGE type: Genomic_island MGE length: 17098 bp
Accession: NZ_CP042980 Location: 3575493..3592590 Organism: Shigella flexneri Y strain PE577 Replicon: chromosome
Accession: NZ_CP042980 Location: 3575493..3592590 Organism: Shigella flexneri Y strain PE577 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FW259_RS18515 () | 3571625..3572569 | + | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
| FW259_RS18520 () | 3572566..3573399 | + | 834 | WP_001008974.1 | nickel ABC transporter permease subunit NikC | - |
| FW259_RS18525 () | 3573399..3574163 | + | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| FW259_RS18530 () | 3574160..3574966 | + | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| FW259_RS18535 () | 3574972..3575373 | + | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| FW259_RS18540 () | 3575493..3575852 | - | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| FW259_RS18545 () | 3575849..3576124 | - | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| FW259_RS18550 () | 3576183..3577307 | - | 1125 | WP_001216257.1 | ABC transporter permease | - |
| FW259_RS18555 () | 3577307..3580042 | - | 2736 | WP_000149173.1 | Ribosome-associated ATPase | VF |
| FW259_RS18560 () | 3580039..3581106 | - | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| FW259_RS18565 () | 3581472..3583094 | - | 1623 | WP_024260050.1 | DUF4049 domain-containing protein | - |
| FW259_RS18570 () | 3583356..3584945 | - | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| FW259_RS18575 () | 3585441..3586360 | + | 920 | Protein_3545 | DUF2776 family protein | - |
| FW259_RS18580 () | 3586447..3586923 | - | 477 | WP_000182502.1 | hypothetical protein | - |
| FW259_RS18585 () | 3586916..3587680 | - | 765 | WP_000442141.1 | winged helix-turn-helix domain-containing protein | - |
| FW259_RS18590 () | 3587926..3588687 | + | 762 | WP_011069549.1 | Transcriptional regulatory protein TdiR | VF |
| FW259_RS18595 () | 3588794..3589294 | - | 501 | WP_167389531.1 | hypothetical protein | - |
| FW259_RS18600 () | 3589445..3590593 | - | 1149 | WP_005052604.1 | F1 capsule-anchoring protein | VF |
| FW259_RS18605 () | 3590685..3591913 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| FW259_RS18610 () | 3591884..3592171 | - | 288 | WP_077696389.1 | putative outer membrane usher protein LpfC' | VF |
| FW259_RS18615 () | 3592168..3592740 | - | 573 | WP_167701508.1 | F1 capsule-anchoring protein | VF |
| FW259_RS23675 () | 3592747..3592851 | - | 105 | Protein_3554 | hypothetical protein | - |
| FW259_RS18620 () | 3592881..3593578 | - | 698 | Protein_3555 | IS1 family transposase | - |
| FW259_RS18630 () | 3594107..3595306 | - | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| FW259_RS18635 () | 3595538..3597037 | + | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| FW259_RS18640 () | 3597108..3597443 | - | 336 | WP_000626187.1 | universal stress protein UspB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.006 |