MGE detailed information
MGE type: Conjugative plasmid MGE length: 129967 bp
Accession: NZ_CP042972 Location: 1..129967 Organism: Escherichia coli strain CFSAN061769 Replicon: plasmid pCFSAN061769_03
Accession: NZ_CP042972 Location: 1..129967 Organism: Escherichia coli strain CFSAN061769 Replicon: plasmid pCFSAN061769_03
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA697_RS24430 (214) | 214..714 | + | 501 | WP_000528931.1 | HEPN family nuclease | - |
| CA697_RS24435 (727) | 727..1500 | + | 774 | WP_000905949.1 | hypothetical protein | - |
| CA697_RS24440 (1667) | 1667..2800 | + | 1134 | WP_001542067.1 | DUF3800 domain-containing protein | - |
| CA697_RS24445 (2834) | 2834..3322 | - | 489 | WP_011254646.1 | hypothetical protein | - |
| CA697_RS24450 (3913) | 3913..4131 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| CA697_RS24455 (4133) | 4133..4438 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| CA697_RS24460 (4439) | 4439..5245 | + | 807 | WP_000016982.1 | site-specific integrase | - |
| CA697_RS24465 (6019) | 6019..6774 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| CA697_RS24470 (7362) | 7362..8528 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| CA697_RS24475 (8528) | 8528..9499 | + | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CA697_RS24480 (10366) | 10366..11268 | + | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| CA697_RS24485 (11265) | 11265..11576 | + | 312 | WP_011254640.1 | hypothetical protein | - |
| CA697_RS24490 (11653) | 11653..12336 | + | 684 | WP_000086185.1 | DNA methylase | - |
| CA697_RS24495 (12337) | 12337..12558 | + | 222 | WP_116326982.1 | hypothetical protein | - |
| CA697_RS24500 (12488) | 12488..13006 | + | 519 | WP_123325260.1 | DUF1380 family protein | - |
| CA697_RS24505 (13057) | 13057..13833 | + | 777 | WP_001753849.1 | hypothetical protein | - |
| CA697_RS24510 (14250) | 14250..14675 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| CA697_RS24515 (14722) | 14722..15144 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| CA697_RS24520 (15141) | 15141..15332 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| CA697_RS24525 (16367) | 16367..16597 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| CA697_RS24530 (16649) | 16649..18010 | + | 1362 | WP_000170714.1 | DUF3560 domain-containing protein | - |
| CA697_RS24535 (18058) | 18058..18621 | + | 564 | WP_001348621.1 | class I SAM-dependent methyltransferase | - |
| CA697_RS24540 (18647) | 18647..18859 | + | 213 | WP_001348622.1 | hypothetical protein | - |
| CA697_RS25425 (18772) | 18772..19029 | + | 258 | WP_023147917.1 | hypothetical protein | - |
| CA697_RS25430 (19270) | 19270..19476 | + | 207 | WP_000547975.1 | hypothetical protein | - |
| CA697_RS24545 (19502) | 19502..20041 | + | 540 | WP_116326983.1 | single-stranded DNA-binding protein | - |
| CA697_RS24550 (20104) | 20104..20337 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| CA697_RS24555 (20403) | 20403..22361 | + | 1959 | WP_000117179.1 | ParB/RepB/Spo0J family partition protein | - |
| CA697_RS24560 (22416) | 22416..22850 | + | 435 | WP_000845940.1 | conjugation system SOS inhibitor PsiB | - |
| CA697_RS24565 (22847) | 22847..23609 | + | 763 | Protein_29 | plasmid SOS inhibition protein A | - |
| - (23578) | 23578..23680 | + | 103 | NuclAT_1 | - | - |
| - (23578) | 23578..23680 | + | 103 | NuclAT_1 | - | - |
| - (23578) | 23578..23680 | + | 103 | NuclAT_1 | - | - |
| - (23578) | 23578..23680 | + | 103 | NuclAT_1 | - | - |
| CA697_RS24570 (23726) | 23726..25095 | + | 1370 | WP_085947770.1 | IS3 family transposase IS150 | Transposase |
| - (25122) | 25122..25249 | + | 128 | NuclAT_0 | - | - |
| - (25122) | 25122..25249 | + | 128 | NuclAT_0 | - | - |
| - (25122) | 25122..25249 | + | 128 | NuclAT_0 | - | - |
| - (25122) | 25122..25249 | + | 128 | NuclAT_0 | - | - |
| CA697_RS25435 (25235) | 25235..25384 | + | 150 | Protein_31 | plasmid maintenance protein Mok | - |
| CA697_RS24575 (25326) | 25326..25451 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| CA697_RS25440 (25671) | 25671..25901 | + | 231 | WP_001426396.1 | hypothetical protein | - |
| CA697_RS25445 (25899) | 25899..26072 | - | 174 | Protein_34 | hypothetical protein | - |
| CA697_RS24580 (26142) | 26142..26348 | + | 207 | WP_000275859.1 | hypothetical protein | - |
| CA697_RS24585 (26373) | 26373..26660 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| CA697_RS24590 (26779) | 26779..27600 | + | 822 | WP_001234469.1 | DUF932 domain-containing protein | - |
| CA697_RS24595 (27897) | 27897..28499 | - | 603 | WP_000243712.1 | hypothetical protein | VF |
| CA697_RS24600 (28830) | 28830..29213 | + | 384 | WP_001151566.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| CA697_RS24605 (29476) | 29476..30684 | + | 1209 | WP_116326992.1 | IS4 family transposase IS10R | Transposase |
| CA697_RS24610 (30727) | 30727..31362 | + | 636 | WP_116326995.1 | PAS domain-containing protein | - |
| CA697_RS24615 (31450) | 31450..31677 | + | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| CA697_RS24620 (31711) | 31711..32073 | + | 363 | WP_000338606.1 | type IV conjugative transfer system pilin TraA | - |
| CA697_RS24625 (32078) | 32078..32389 | + | 312 | WP_000012107.1 | type IV conjugative transfer system protein TraL | - |
| CA697_RS24630 (32411) | 32411..32977 | + | 567 | WP_000399791.1 | type IV conjugative transfer system protein TraE | - |
| CA697_RS24635 (32964) | 32964..33692 | + | 729 | WP_001230809.1 | type-F conjugative transfer system secretin TraK | - |
| CA697_RS24640 (33692) | 33692..35143 | + | 1452 | WP_116326994.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| CA697_RS24645 (35133) | 35133..35699 | + | 567 | WP_001617877.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| CA697_RS24650 (35686) | 35686..35997 | + | 312 | WP_001057272.1 | conjugal transfer protein TrbD | - |
| CA697_RS24655 (35997) | 35997..36512 | + | 516 | WP_000809886.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CA697_RS24660 (36647) | 36647..36868 | + | 222 | WP_001278694.1 | conjugal transfer protein TraR | - |
| CA697_RS24665 (37028) | 37028..39655 | + | 2628 | WP_001064258.1 | type IV secretion system protein TraC | - |
| CA697_RS24670 (39652) | 39652..40038 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| CA697_RS24675 (40035) | 40035..40667 | + | 633 | WP_052931150.1 | type-F conjugative transfer system protein TraW | - |
| CA697_RS24680 (40664) | 40664..41656 | + | 993 | WP_000830190.1 | conjugal transfer pilus assembly protein TraU | - |
| CA697_RS24685 (41686) | 41686..41991 | + | 306 | WP_000224413.1 | hypothetical protein | - |
| CA697_RS24690 (42000) | 42000..42638 | + | 639 | WP_001080259.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CA697_RS24695 (42635) | 42635..44485 | + | 1851 | WP_000821866.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| CA697_RS24700 (44512) | 44512..44769 | + | 258 | WP_000864347.1 | conjugal transfer protein TrbE | - |
| CA697_RS24705 (44762) | 44762..45505 | + | 744 | WP_001030401.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| CA697_RS24710 (45635) | 45635..46615 | + | 981 | WP_000019450.1 | IS5 family transposase ISKpn26 | Transposase |
| CA697_RS24715 (46770) | 46770..47467 | + | 698 | WP_223216367.1 | IS1 family transposase IS1G | Transposase |
| CA697_RS24720 (47515) | 47515..47835 | + | 321 | WP_001348757.1 | conjugal transfer protein TrbA | - |
| CA697_RS24725 (47962) | 47962..48246 | + | 285 | WP_001617873.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| CA697_RS24730 (48233) | 48233..48778 | + | 546 | WP_000059829.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| CA697_RS24735 (48708) | 48708..49055 | + | 348 | WP_071571857.1 | P-type conjugative transfer protein TrbJ | - |
| CA697_RS24740 (49036) | 49036..49428 | + | 393 | WP_000659962.1 | F-type conjugal transfer protein TrbF | - |
| CA697_RS24745 (49415) | 49415..50788 | + | 1374 | WP_000944328.1 | conjugal transfer pilus assembly protein TraH | - |
| CA697_RS24750 (50785) | 50785..53604 | + | 2820 | WP_001007062.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| CA697_RS24755 (53623) | 53623..54120 | + | 498 | WP_000605862.1 | entry exclusion protein | - |
| CA697_RS24760 (54152) | 54152..54883 | + | 732 | WP_000850429.1 | conjugal transfer complement resistance protein TraT | - |
| CA697_RS24765 (55086) | 55086..55865 | + | 780 | WP_000199914.1 | hypothetical protein | - |
| CA697_RS24770 (55862) | 55862..58033 | + | 2172 | WP_032153767.1 | type IV conjugative transfer system coupling protein TraD | - |
| CA697_RS24775 (58033) | 58033..63303 | + | 5271 | WP_001617867.1 | Multifunctional conjugation protein TraI | Relaxase |
| CA697_RS24780 (63323) | 63323..64069 | + | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| CA697_RS24785 (64124) | 64124..64684 | + | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
| CA697_RS24790 (64815) | 64815..65027 | + | 213 | WP_013023861.1 | hypothetical protein | - |
| CA697_RS24795 (65540) | 65540..65826 | + | 287 | Protein_78 | DUF2726 domain-containing protein | - |
| - (65793) | 65793..65853 | - | 61 | NuclAT_2 | - | - |
| - (65793) | 65793..65853 | - | 61 | NuclAT_2 | - | - |
| - (65793) | 65793..65853 | - | 61 | NuclAT_2 | - | - |
| - (65793) | 65793..65853 | - | 61 | NuclAT_2 | - | - |
| CA697_RS24800 (65898) | 65898..66032 | + | 135 | WP_023144756.1 | Hok/Gef family protein | Toxin Detail |
| CA697_RS24805 (66329) | 66329..66583 | + | 255 | WP_000083850.1 | replication regulatory protein RepA | - |
| CA697_RS24810 (66689) | 66689..66820 | + | 132 | Protein_81 | protein CopA/IncA | - |
| CA697_RS24815 (66820) | 66820..66894 | + | 75 | WP_031943482.1 | RepA leader peptide Tap | - |
| CA697_RS24820 (66887) | 66887..67585 | + | 699 | WP_143366464.1 | plasmid replication initiator RepA | - |
| CA697_RS24825 (68287) | 68287..68427 | + | 141 | WP_001333237.1 | hypothetical protein | - |
| CA697_RS24830 (68525) | 68525..69178 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| CA697_RS24835 (69271) | 69271..69528 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| CA697_RS24840 (69461) | 69461..69862 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| CA697_RS24845 (70147) | 70147..70404 | + | 258 | WP_021521885.1 | DUF262 domain-containing protein | - |
| CA697_RS24850 (70389) | 70389..71249 | + | 861 | WP_000493383.1 | EamA family transporter | - |
| CA697_RS24855 (71281) | 71281..72480 | - | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| CA697_RS24860 (72586) | 72586..73236 | + | 651 | WP_038989485.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| CA697_RS24865 (73268) | 73268..73510 | - | 243 | WP_000844627.1 | transposase | - |
| CA697_RS24870 (74513) | 74513..74947 | - | 435 | WP_000429836.1 | IS607 family transposase ISChh1 | Transposase |
| CA697_RS24875 (75019) | 75019..75369 | + | 351 | WP_001294663.1 | mercuric transport protein MerT | - |
| CA697_RS24880 (75383) | 75383..75658 | + | 276 | WP_000732292.1 | mercury resistance system periplasmic binding protein MerP | - |
| CA697_RS24885 (75694) | 75694..76116 | + | 423 | WP_001340589.1 | organomercurial transporter MerC | - |
| CA697_RS24890 (76168) | 76168..77862 | + | 1695 | WP_000105636.1 | mercury(II) reductase | - |
| CA697_RS24895 (77880) | 77880..78242 | + | 363 | WP_001277456.1 | mercury resistance co-regulator MerD | - |
| CA697_RS24900 (78239) | 78239..78475 | + | 237 | WP_000993386.1 | broad-spectrum mercury transporter MerE | - |
| CA697_RS24905 (78511) | 78511..79179 | + | 669 | WP_001300294.1 | putative signaling protein | VF |
| CA697_RS24910 (79254) | 79254..80504 | + | 1251 | Protein_101 | transposase | - |
| CA697_RS24915 (80569) | 80569..81273 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CA697_RS24920 (81328) | 81328..81585 | + | 258 | Protein_103 | hypothetical protein | - |
| CA697_RS24925 (81731) | 81731..82594 | + | 864 | WP_000612791.1 | SDR family oxidoreductase | - |
| CA697_RS24930 (82698) | 82698..82877 | + | 180 | WP_229975278.1 | GrpB family protein | - |
| CA697_RS24935 (83346) | 83346..84137 | + | 792 | WP_000034420.1 | Dihydropteroate synthase | ARG |
| CA697_RS24940 (84140) | 84140..84415 | - | 276 | WP_109023896.1 | hypothetical protein | - |
| CA697_RS24945 (84438) | 84438..85070 | + | 633 | WP_020802982.1 | IS256 family transposase IS406 | Transposase |
| CA697_RS24950 (85317) | 85317..85649 | - | 333 | WP_000800531.1 | quaternary ammonium compound efflux SMR transporter QacL | - |
| CA697_RS24955 (85772) | 85772..86610 | - | 839 | Protein_110 | Streptomycin 3''-adenylyltransferase | ARG |
| CA697_RS24960 (86703) | 86703..87962 | - | 1260 | WP_001724981.1 | Bicyclomycin resistance protein | ARG |
| CA697_RS24965 (88177) | 88177..89015 | - | 839 | Protein_112 | Streptomycin 3''-adenylyltransferase | ARG |
| CA697_RS24970 (89021) | 89021..89311 | - | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| CA697_RS24975 (89423) | 89423..89920 | - | 498 | WP_001083725.1 | Dihydrofolate reductase | ARG |
| CA697_RS24980 (90065) | 90065..91078 | + | 1014 | WP_000845054.1 | IS91 family transposase ISAzo26 | Transposase |
| CA697_RS24985 (91281) | 91281..91631 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| CA697_RS24990 (91807) | 91807..92367 | + | 561 | WP_001161490.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| CA697_RS24995 (92371) | 92371..95016 | + | 2646 | Protein_118 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| CA697_RS25000 (95046) | 95046..96650 | - | 1605 | Protein_119 | Tn3 family transposase TnpA_Tn3 | Transposase |
| CA697_RS25005 (96715) | 96715..97419 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CA697_RS25010 (97592) | 97592..97795 | + | 204 | Protein_121 | hypothetical protein | - |
| CA697_RS25015 (97920) | 97920..98048 | - | 129 | Protein_122 | IS481 family transposase | - |
| CA697_RS25020 (98081) | 98081..99250 | - | 1170 | WP_001072355.1 | hypothetical protein | - |
| CA697_RS25025 (99782) | 99782..100050 | + | 269 | Protein_124 | type II toxin-antitoxin system ParD family antitoxin | - |
| CA697_RS25450 (100037) | 100037..100326 | + | 290 | Protein_125 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CA697_RS25030 (100393) | 100393..100575 | + | 183 | WP_042344623.1 | hypothetical protein | - |
| CA697_RS25035 (100696) | 100696..101436 | + | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| CA697_RS25040 (101721) | 101721..102698 | - | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| CA697_RS25045 (103444) | 103444..103767 | + | 324 | Protein_129 | IS21 family transposase IS21 | Transposase |
| CA697_RS25050 (103769) | 103769..103873 | + | 105 | Protein_130 | AAA family ATPase | - |
| CA697_RS25055 (103934) | 103934..104447 | + | 514 | Protein_131 | DUF4113 domain-containing protein | - |
| CA697_RS25065 (105680) | 105680..106594 | + | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| CA697_RS25070 (106594) | 106594..107421 | + | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| CA697_RS25075 (107418) | 107418..108275 | + | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| CA697_RS25080 (108272) | 108272..109129 | + | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| CA697_RS25085 (109363) | 109363..109620 | - | 258 | Protein_137 | transposase | - |
| CA697_RS25090 (109618) | 109618..110031 | + | 414 | Protein_138 | phosphopyruvate hydratase | - |
| CA697_RS25095 (110372) | 110372..110752 | + | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| CA697_RS25100 (111132) | 111132..112325 | - | 1194 | WP_000095526.1 | MFS transporter | - |
| CA697_RS25105 (112461) | 112461..114185 | + | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| CA697_RS25110 (114186) | 114186..115133 | + | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| CA697_RS25115 (115133) | 115133..116875 | + | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| CA697_RS25120 (116872) | 116872..118205 | + | 1334 | Protein_144 | L-lysine N6-monooxygenase | VF |
| CA697_RS25125 (118231) | 118231..120432 | + | 2202 | WP_000973519.1 | Ferric aerobactin receptor | VF |
| CA697_RS25130 (120812) | 120812..121509 | + | 698 | WP_223155668.1 | IS1 family transposase IS1S | Transposase |
| CA697_RS25135 (121763) | 121763..122785 | - | 1023 | WP_000361402.1 | helicase UvrD | - |
| CA697_RS25140 (122770) | 122770..124335 | - | 1566 | WP_001128474.1 | AAA family ATPase | - |
| CA697_RS25145 (124410) | 124410..124826 | - | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | - |
| CA697_RS25150 (124823) | 124823..125053 | - | 231 | WP_001261286.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| CA697_RS25155 (125434) | 125434..129228 | + | 3795 | WP_001144732.1 | hypothetical protein | - |
| CA697_RS25160 (129273) | 129273..129689 | - | 417 | WP_001034046.1 | type II toxin-antitoxin system VapC family toxin | - |
| CA697_RS25165 (129686) | 129686..129916 | - | 231 | WP_001261278.1 | type II toxin-antitoxin system VapB family antitoxin | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|