MGE detailed information
MGE type: Prophage MGE length: 79851 bp
Accession: NZ_CP042901 Location: 3761140..3840990 Organism: Escherichia coli strain CFSAN061762 Replicon: chromosome
Accession: NZ_CP042901 Location: 3761140..3840990 Organism: Escherichia coli strain CFSAN061762 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA898_RS18160 (3756836) | 3756836..3759053 | + | 2218 | Protein_3569 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| CA898_RS18165 (3759063) | 3759063..3760019 | + | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| CA898_RS18170 (3760070) | 3760070..3760408 | + | 339 | Protein_3571 | LysR substrate-binding domain-containing protein | - |
| CA898_RS18175 (3760781) | 3760781..3761143 | + | 363 | WP_000915848.1 | GtrA family protein | - |
| CA898_RS18180 (3761140) | 3761140..3762054 | + | 915 | WP_000703662.1 | glycosyltransferase family 2 protein | - |
| CA898_RS18185 (3762056) | 3762056..3763369 | + | 1314 | WP_025745203.1 | hypothetical protein | - |
| CA898_RS18190 (3763404) | 3763404..3763883 | - | 480 | WP_000171493.1 | hypothetical protein | - |
| CA898_RS18195 (3764042) | 3764042..3765188 | + | 1147 | WP_106495017.1 | IS3 family transposase | - |
| CA898_RS18200 (3765205) | 3765205..3765720 | + | 516 | Protein_3577 | tail fiber assembly protein | - |
| CA898_RS18205 (3765692) | 3765692..3766144 | - | 453 | WP_005106767.1 | tail fiber assembly protein | - |
| CA898_RS18210 (3766116) | 3766116..3766766 | - | 651 | WP_001579925.1 | hypothetical protein | - |
| CA898_RS18215 (3766770) | 3766770..3767354 | - | 585 | WP_000383532.1 | YmfQ family protein | - |
| CA898_RS18220 (3767345) | 3767345..3768403 | - | 1059 | WP_000785319.1 | baseplate J/gp47 family protein | - |
| CA898_RS18225 (3768390) | 3768390..3768815 | - | 426 | WP_000424732.1 | phage GP46 family protein | - |
| CA898_RS18230 (3768815) | 3768815..3769363 | - | 549 | WP_001259067.1 | phage baseplate assembly protein V | - |
| CA898_RS18235 (3769363) | 3769363..3770442 | - | 1080 | WP_000999510.1 | baseplate protein | - |
| CA898_RS18240 (3770439) | 3770439..3771815 | - | 1377 | WP_024260396.1 | DNA circularization N-terminal domain-containing protein | - |
| CA898_RS18245 (3771840) | 3771840..3773747 | - | 1908 | WP_021540771.1 | phage tail tape measure protein | - |
| CA898_RS18250 (3773832) | 3773832..3774155 | - | 324 | WP_000571712.1 | phage tail assembly protein | - |
| CA898_RS18255 (3774152) | 3774152..3774508 | - | 357 | WP_000090998.1 | phage tail tube protein | - |
| CA898_RS18260 (3774508) | 3774508..3776004 | - | 1497 | WP_061353157.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CA898_RS18265 (3775988) | 3775988..3776158 | - | 171 | WP_000497751.1 | DUF2635 domain-containing protein | - |
| CA898_RS18270 (3776167) | 3776167..3776727 | - | 561 | WP_025745201.1 | hypothetical protein | - |
| CA898_RS18275 (3776724) | 3776724..3777248 | - | 525 | WP_001522202.1 | hypothetical protein | - |
| CA898_RS18280 (3777220) | 3777220..3777630 | - | 411 | WP_000702400.1 | phage head closure protein | - |
| CA898_RS18285 (3777627) | 3777627..3777950 | - | 324 | WP_000927722.1 | head-tail connector protein | - |
| CA898_RS18290 (3777953) | 3777953..3778153 | - | 201 | WP_000601365.1 | hypothetical protein | - |
| CA898_RS18295 (3778202) | 3778202..3779407 | - | 1206 | WP_000257490.1 | phage major capsid protein | - |
| CA898_RS18300 (3779422) | 3779422..3780072 | - | 651 | WP_001193631.1 | HK97 family phage prohead protease | - |
| CA898_RS18305 (3780050) | 3780050..3781291 | - | 1242 | WP_001524100.1 | phage portal protein | - |
| CA898_RS18310 (3781291) | 3781291..3781473 | - | 183 | WP_000605606.1 | protein YmfR | - |
| CA898_RS18315 (3781485) | 3781485..3783218 | - | 1734 | WP_000088161.1 | terminase large subunit | - |
| CA898_RS18320 (3783215) | 3783215..3783709 | - | 495 | WP_000929184.1 | phage terminase small subunit P27 family | - |
| CA898_RS18325 (3783835) | 3783835..3784185 | - | 351 | WP_001135227.1 | HNH endonuclease | - |
| CA898_RS24050 (3784477) | 3784477..3784752 | - | 276 | WP_130526339.1 | peptidase | - |
| CA898_RS18330 (3784637) | 3784637..3785029 | - | 393 | WP_005106761.1 | DUF2570 domain-containing protein | - |
| CA898_RS18335 (3785013) | 3785013..3785489 | - | 477 | WP_001197751.1 | glycoside hydrolase family protein | - |
| CA898_RS18340 (3785493) | 3785493..3785819 | - | 327 | WP_001120492.1 | phage holin, lambda family | - |
| CA898_RS18345 (3786181) | 3786181..3787266 | + | 1086 | WP_025745200.1 | hypothetical protein | - |
| CA898_RS18350 (3787285) | 3787285..3787797 | + | 513 | WP_049592588.1 | hypothetical protein | - |
| CA898_RS18355 (3787818) | 3787818..3788180 | - | 363 | WP_001204823.1 | antiterminator Q family protein | - |
| CA898_RS18360 (3788198) | 3788198..3789187 | - | 990 | WP_024260395.1 | DUF968 domain-containing protein | - |
| CA898_RS18365 (3789195) | 3789195..3790010 | - | 816 | WP_001072674.1 | KilA-N domain-containing protein | - |
| CA898_RS18370 (3790173) | 3790173..3790568 | - | 396 | Protein_3612 | RusA family crossover junction endodeoxyribonuclease | - |
| CA898_RS18375 (3790565) | 3790565..3790891 | - | 327 | WP_000210181.1 | LexA family transcriptional regulator | - |
| CA898_RS18380 (3790891) | 3790891..3791385 | - | 495 | WP_001407082.1 | PerC family transcriptional regulator | - |
| CA898_RS18385 (3791382) | 3791382..3792323 | - | 942 | WP_000104967.1 | helix-turn-helix domain-containing protein | - |
| CA898_RS18390 (3792313) | 3792313..3792492 | - | 180 | WP_001250269.1 | DUF4222 domain-containing protein | - |
| CA898_RS18395 (3792668) | 3792668..3793219 | - | 552 | WP_001434539.1 | protein YmfL | - |
| CA898_RS18400 (3793257) | 3793257..3793457 | - | 201 | WP_000205494.1 | Cro/CI family transcriptional regulator | - |
| CA898_RS18405 (3793555) | 3793555..3794181 | + | 627 | WP_061353159.1 | LexA family transcriptional regulator | - |
| CA898_RS18410 (3794429) | 3794429..3794635 | + | 207 | WP_000549623.1 | hypothetical protein | - |
| CA898_RS18415 (3794607) | 3794607..3795041 | - | 435 | WP_000016389.1 | hypothetical protein | - |
| CA898_RS18420 (3795185) | 3795185..3795495 | + | 311 | Protein_3622 | hypothetical protein | - |
| CA898_RS18425 (3795510) | 3795510..3795872 | + | 363 | WP_000135682.1 | protein YfdP | - |
| CA898_RS18430 (3795938) | 3795938..3796762 | + | 825 | WP_061353160.1 | DUF2303 family protein | - |
| CA898_RS18435 (3796890) | 3796890..3797426 | + | 537 | WP_001619130.1 | 5'-deoxynucleotidase | - |
| CA898_RS18440 (3797417) | 3797417..3797779 | + | 363 | WP_001242749.1 | phage protein | - |
| CA898_RS18445 (3797779) | 3797779..3798084 | + | 306 | WP_000206734.1 | protein YfdT | - |
| CA898_RS24055 (3798084) | 3798084..3798434 | + | 351 | WP_000433939.1 | helix-turn-helix domain-containing protein | - |
| CA898_RS18450 (3798356) | 3798356..3799474 | + | 1119 | WP_001132557.1 | tyrosine-type recombinase/integrase | - |
| CA898_RS18460 (3799679) | 3799679..3800932 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| CA898_RS18465 (3800944) | 3800944..3802047 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| CA898_RS18470 (3802335) | 3802335..3803390 | + | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| CA898_RS18475 (3803429) | 3803429..3803830 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| - (3804548) | 3804548..3804628 | - | 81 | NuclAT_10 | - | - |
| - (3804548) | 3804548..3804628 | - | 81 | NuclAT_10 | - | - |
| - (3804548) | 3804548..3804628 | - | 81 | NuclAT_10 | - | - |
| - (3804548) | 3804548..3804628 | - | 81 | NuclAT_10 | - | - |
| CA898_RS18480 (3803888) | 3803888..3805132 | - | 1245 | WP_000189541.1 | esterase FrsA | - |
| CA898_RS18485 (3805224) | 3805224..3805682 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| CA898_RS18490 (3805943) | 3805943..3807400 | + | 1458 | WP_001293003.1 | cytosol nonspecific dipeptidase | - |
| CA898_RS18495 (3807457) | 3807457..3807978 | - | 522 | Protein_3637 | peptide chain release factor H | - |
| CA898_RS18500 (3807977) | 3807977..3808180 | - | 204 | Protein_3638 | RtcB family protein | - |
| CA898_RS18505 (3808426) | 3808426..3808878 | - | 453 | WP_001059847.1 | GNAT family N-acetyltransferase | - |
| CA898_RS18510 (3808888) | 3808888..3809286 | - | 399 | WP_001263493.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| CA898_RS18515 (3809289) | 3809289..3809582 | - | 294 | WP_032162515.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| CA898_RS18520 (3809634) | 3809634..3810689 | - | 1056 | WP_032162516.1 | DNA polymerase IV | - |
| CA898_RS18525 (3810760) | 3810760..3811545 | - | 786 | WP_000207587.1 | putative lateral flagellar export/assembly protein LafU | - |
| CA898_RS18530 (3811517) | 3811517..3813229 | + | 1713 | Protein_3644 | flagellar biosynthesis protein FlhA | - |
| CA898_RS18535 (3813453) | 3813453..3813950 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| CA898_RS18540 (3814126) | 3814126..3814875 | - | 750 | WP_024192679.1 | C40 family peptidase | - |
| CA898_RS18545 (3815085) | 3815085..3815345 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| CA898_RS18550 (3815348) | 3815348..3815626 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| CA898_RS18555 (3815782) | 3815782..3816522 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| CA898_RS18560 (3816493) | 3816493..3817260 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| CA898_RS18565 (3817466) | 3817466..3818044 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
| CA898_RS18570 (3818284) | 3818284..3820728 | + | 2445 | WP_000973083.1 | acyl-CoA dehydrogenase FadE | - |
| CA898_RS18575 (3820771) | 3820771..3821217 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| CA898_RS18580 (3821398) | 3821398..3822168 | + | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| CA898_RS18585 (3822209) | 3822209..3823345 | - | 1137 | WP_000420818.1 | ISAs1 family transposase | - |
| CA898_RS18590 (3823742) | 3823742..3824439 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| CA898_RS18595 (3824433) | 3824433..3825185 | - | 753 | WP_001556415.1 | hypothetical protein | - |
| CA898_RS18605 (3825724) | 3825724..3826455 | - | 732 | WP_001300756.1 | DNA polymerase III subunit epsilon | - |
| CA898_RS18610 (3826520) | 3826520..3826987 | + | 468 | WP_001556414.1 | ribonuclease HI | - |
| CA898_RS18615 (3826984) | 3826984..3827706 | - | 723 | WP_001297210.1 | class I SAM-dependent methyltransferase | - |
| CA898_RS18620 (3827740) | 3827740..3828495 | + | 756 | WP_001052717.1 | hydroxyacylglutathione hydrolase | - |
| CA898_RS18625 (3828567) | 3828567..3829925 | + | 1359 | WP_000644685.1 | murein transglycosylase D | - |
| CA898_RS18630 (3829973) | 3829973..3830569 | - | 597 | Protein_3663 | methyltransferase domain-containing protein | - |
| CA898_RS18635 (3830600) | 3830600..3831400 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| CA898_RS18640 (3831641) | 3831641..3832555 | + | 915 | WP_000648577.1 | DNA-binding transcriptional regulator YafC | - |
| CA898_RS18645 (3832552) | 3832552..3833355 | - | 804 | WP_000997050.1 | 2,5-didehydrogluconate reductase DkgB | - |
| CA898_RS18680 (3839199) | 3839199..3839771 | - | 573 | WP_001140174.1 | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | - |
| CA898_RS18685 (3839959) | 3839959..3840990 | + | 1032 | WP_000593994.1 | methionine ABC transporter ATP-binding protein MetN | - |
| CA898_RS18690 (3840983) | 3840983..3841636 | + | 654 | WP_001294600.1 | methionine ABC transporter permease MetI | - |
| CA898_RS18695 (3841676) | 3841676..3842491 | + | 816 | WP_000874226.1 | methionine ABC transporter substrate-binding lipoprotein MetQ | - |
| CA898_RS18700 (3842609) | 3842609..3843013 | + | 405 | WP_001202329.1 | Rcs stress response system protein RcsF | - |
| CA898_RS18705 (3843010) | 3843010..3843717 | + | 708 | WP_000094011.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| CA898_RS18710 (3843828) | 3843828..3845546 | + | 1719 | WP_001260707.1 | proline--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|