MGE detailed information
MGE type: Prophage MGE length: 57900 bp
Accession: NZ_CP042893 Location: 2220981..2278880 Organism: Escherichia coli strain CFSAN061772 Replicon: chromosome
Accession: NZ_CP042893 Location: 2220981..2278880 Organism: Escherichia coli strain CFSAN061772 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA901_RS10675 (2217072) | 2217072..2217437 | + | 366 | WP_000276149.1 | multidrug/spermidine efflux SMR transporter subunit MdtJ | - |
| CA901_RS10680 (2217424) | 2217424..2217753 | + | 330 | WP_000046661.1 | multidrug/spermidine efflux SMR transporter subunit MdtI | - |
| CA901_RS10685 (2217792) | 2217792..2218613 | - | 822 | WP_001260865.1 | serine protease | - |
| CA901_RS10690 (2218713) | 2218713..2218796 | - | 84 | WP_000233090.1 | hypothetical protein | - |
| CA901_RS10695 (2218889) | 2218889..2219197 | - | 309 | WP_001340364.1 | acid resistance repetitive basic protein Asr | - |
| CA901_RS10705 (2219621) | 2219621..2220874 | - | 1254 | WP_000091840.1 | MFS transporter | - |
| CA901_RS10710 (2220981) | 2220981..2221874 | + | 894 | WP_116439144.1 | hypothetical protein | VF |
| CA901_RS10715 (2222009) | 2222009..2223229 | + | 1221 | WP_032169983.1 | DNA-binding transcriptional repressor Mlc | - |
| CA901_RS10720 (2223354) | 2223354..2224049 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| CA901_RS10725 (2224002) | 2224002..2225294 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| CA901_RS10730 (2225453) | 2225453..2226067 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| CA901_RS10735 (2226110) | 2226110..2226964 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| CA901_RS10740 (2226966) | 2226966..2227583 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| CA901_RS10745 (2227594) | 2227594..2230017 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| CA901_RS10750 (2230078) | 2230078..2232504 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| CA901_RS10755 (2232703) | 2232703..2233008 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| CA901_RS10760 (2233116) | 2233116..2233826 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| CA901_RS10765 (2233829) | 2233829..2234389 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| CA901_RS10770 (2234424) | 2234424..2234765 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| CA901_RS10775 (2234900) | 2234900..2235226 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| CA901_RS10780 (2235432) | 2235432..2236646 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| CA901_RS10785 (2236658) | 2236658..2237677 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| CA901_RS10790 (2237865) | 2237865..2239145 | - | 1281 | WP_000876958.1 | hypothetical protein ; Integrase | Integrase |
| CA901_RS10795 (2239180) | 2239180..2239431 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| CA901_RS10800 (2239504) | 2239504..2241975 | - | 2472 | WP_116439143.1 | exonuclease | - |
| CA901_RS10805 (2242068) | 2242068..2242259 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| CA901_RS10810 (2242256) | 2242256..2242444 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| CA901_RS10815 (2242527) | 2242527..2242829 | + | 303 | Protein_2114 | DUF977 family protein | - |
| CA901_RS10820 (2242826) | 2242826..2243315 | + | 490 | Protein_2115 | SAM-dependent methyltransferase | - |
| CA901_RS10825 (2243793) | 2243793..2244214 | + | 422 | Protein_2116 | hypothetical protein | - |
| CA901_RS10830 (2244870) | 2244870..2245892 | + | 1023 | Protein_2117 | ISNCY family transposase ISCARN112 | Transposase |
| CA901_RS24545 (2246013) | 2246013..2246162 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| CA901_RS10835 (2246599) | 2246599..2246931 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| CA901_RS10840 (2247134) | 2247134..2247439 | - | 306 | WP_001326990.1 | protein YdfV | - |
| CA901_RS10845 (2247464) | 2247464..2247703 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| CA901_RS10850 (2247703) | 2247703..2247990 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| CA901_RS10855 (2248062) | 2248062..2248217 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| CA901_RS10860 (2248434) | 2248434..2248685 | + | 252 | WP_000980994.1 | protein Rem | - |
| CA901_RS10865 (2248752) | 2248752..2249030 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| CA901_RS10870 (2249032) | 2249032..2250081 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| CA901_RS10875 (2250095) | 2250095..2250848 | + | 754 | Protein_2127 | antitermination protein | - |
| CA901_RS10880 (2251126) | 2251126..2251215 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| CA901_RS10885 (2251270) | 2251270..2251482 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| CA901_RS10890 (2251783) | 2251783..2251998 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| CA901_RS10895 (2252362) | 2252362..2252532 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| CA901_RS10900 (2252752) | 2252752..2252967 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| CA901_RS10905 (2252972) | 2252972..2253283 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| CA901_RS10910 (2253280) | 2253280..2253813 | + | 534 | WP_001092971.1 | lysozyme | - |
| CA901_RS10915 (2253810) | 2253810..2254307 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| CA901_RS10920 (2254670) | 2254670..2254882 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| CA901_RS10925 (2254893) | 2254893..2255081 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| CA901_RS10930 (2255084) | 2255084..2255149 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| CA901_RS10935 (2255229) | 2255229..2255384 | + | 156 | WP_001309517.1 | protein YnfN | - |
| CA901_RS10940 (2255556) | 2255556..2255729 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| CA901_RS10945 (2255881) | 2255881..2256291 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| CA901_RS10950 (2256349) | 2256349..2256582 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| CA901_RS10955 (2257011) | 2257011..2257454 | + | 444 | Protein_2143 | hypothetical protein | - |
| CA901_RS10960 (2257515) | 2257515..2258675 | + | 1161 | Protein_2144 | phage tail protein | - |
| CA901_RS24550 (2258675) | 2258675..2258800 | + | 126 | Protein_2145 | hypothetical protein | - |
| CA901_RS10965 (2258800) | 2258800..2259375 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| CA901_RS10970 (2259473) | 2259473..2260063 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| CA901_RS10975 (2260380) | 2260380..2260613 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| CA901_RS10980 (2260682) | 2260682..2260795 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| CA901_RS10985 (2261316) | 2261316..2262683 | + | 1368 | Protein_2150 | MHS family MFS transporter | - |
| CA901_RS10990 (2262772) | 2262772..2264232 | + | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| CA901_RS10995 (2264267) | 2264267..2264470 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| CA901_RS11000 (2264647) | 2264647..2265333 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| CA901_RS11005 (2265422) | 2265422..2266168 | - | 747 | WP_000636571.1 | hypothetical protein | VF |
| CA901_RS11010 (2266305) | 2266305..2268350 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| CA901_RS11015 (2268394) | 2268394..2268912 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| CA901_RS11020 (2269188) | 2269188..2269580 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| CA901_RS11025 (2269835) | 2269835..2270725 | + | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| CA901_RS11030 (2270840) | 2270840..2270944 | - | 105 | WP_211180496.1 | protein MgtT | - |
| CA901_RS11035 (2270944) | 2270944..2271039 | - | 96 | WP_000901367.1 | protein MgtS | - |
| CA901_RS11040 (2271166) | 2271166..2272353 | - | 1188 | WP_001054183.1 | efflux MFS transporter YdeE | - |
| CA901_RS11045 (2272548) | 2272548..2273446 | + | 899 | Protein_2162 | O-acetylserine/cysteine exporter | - |
| CA901_RS11050 (2273477) | 2273477..2273695 | - | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| CA901_RS11055 (2273727) | 2273727..2274110 | - | 384 | WP_000091199.1 | hypothetical protein | VF |
| CA901_RS11060 (2274130) | 2274130..2274564 | - | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
| CA901_RS11065 (2274776) | 2274776..2275441 | + | 666 | WP_000885033.1 | NAAT family transporter MarC | - |
| CA901_RS11070 (2275466) | 2275466..2276656 | - | 1191 | WP_116439154.1 | L-arabinose MFS transporter | - |
| CA901_RS11075 (2276806) | 2276806..2277921 | - | 1116 | WP_000258599.1 | putative protein YneK | - |
| CA901_RS11080 (2277999) | 2277999..2278880 | - | 882 | WP_000366501.1 | hypothetical protein | VF |
| CA901_RS11085 (2278981) | 2278981..2280369 | + | 1389 | WP_000156615.1 | succinate-semialdehyde dehydrogenase | - |
| CA901_RS11090 (2280433) | 2280433..2281359 | + | 927 | WP_116439153.1 | glutaminase B | - |
| CA901_RS11095 (2281359) | 2281359..2281718 | + | 360 | WP_001191027.1 | DUF4186 domain-containing protein | - |
| CA901_RS11100 (2281791) | 2281791..2282777 | + | 987 | Protein_2173 | GGDEF domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli C | Prophage | TA75071 | NZ_CP020543 | 2249542..2301270 | 0.008 |