MGE detailed information
MGE type: Conjugative plasmid MGE length: 88772 bp
Accession: NZ_CP042886 Location: 1..88772 Organism: Escherichia coli O10:H32 strain NMBU-W12E19 Replicon: plasmid pNMBU-W12E19_02
Accession: NZ_CP042886 Location: 1..88772 Organism: Escherichia coli O10:H32 strain NMBU-W12E19 Replicon: plasmid pNMBU-W12E19_02
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FVP48_RS00980 () | 46..1077 | + | 1032 | WP_000907869.1 | replication initiation protein | - |
| FVP48_RS00985 () | 1987..2256 | + | 270 | WP_000079941.1 | hypothetical protein | Antitoxin Detail |
| FVP48_RS00990 () | 2253..2534 | + | 282 | WP_000970007.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FVP48_RS00995 () | 2574..3422 | + | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| FVP48_RS01000 () | 3539..4012 | + | 474 | WP_001334658.1 | hypothetical protein | - |
| FVP48_RS01005 () | 4489..4755 | - | 267 | WP_000955263.1 | hypothetical protein | - |
| FVP48_RS01010 () | 4755..5249 | - | 495 | WP_001459505.1 | hypothetical protein | - |
| FVP48_RS01015 () | 5305..5907 | - | 603 | WP_000517694.1 | hypothetical protein | - |
| FVP48_RS01020 () | 6278..6982 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| FVP48_RS01025 () | 7046..7561 | + | 516 | Protein_9 | ISKra4 family transposase ISKpn19 | Transposase |
| FVP48_RS01030 () | 7594..8022 | + | 429 | Protein_10 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| FVP48_RS01035 () | 8341..8997 | - | 657 | WP_001516695.1 | Pentapeptide repeat protein | ARG |
| FVP48_RS01040 () | 9392..10407 | + | 1016 | Protein_12 | IS3 family transposase ISEc36 | Transposase |
| FVP48_RS01045 () | 10450..13245 | - | 2796 | Protein_13 | Tn3 family transposase TnpA_Tn3 | Transposase |
| FVP48_RS01050 () | 13259..13591 | + | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| FVP48_RS01055 () | 13638..14513 | - | 876 | WP_000239590.1 | Beta-lactamase CTX-M-1 | ARG |
| FVP48_RS01060 () | 14662..14829 | + | 168 | Protein_16 | serine hydrolase | - |
| FVP48_RS01065 () | 15074..15376 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| FVP48_RS01070 () | 15373..15999 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| FVP48_RS01075 () | 16203..17474 | - | 1272 | WP_000457515.1 | Y-family DNA polymerase | - |
| FVP48_RS01080 () | 17474..17911 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| FVP48_RS01085 () | 17908..18156 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| FVP48_RS01090 () | 18575..19477 | + | 903 | WP_023383827.1 | DUF1281 domain-containing protein | - |
| FVP48_RS01095 () | 19474..19785 | + | 312 | WP_001310011.1 | hypothetical protein | - |
| FVP48_RS01100 () | 19862..20545 | + | 684 | WP_000086153.1 | DNA methylase | - |
| FVP48_RS01105 () | 20546..20767 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| FVP48_RS01110 () | 20781..21215 | + | 435 | WP_000274412.1 | DUF1380 family protein | - |
| FVP48_RS01115 () | 21261..21486 | + | 226 | Protein_27 | hypothetical protein | - |
| FVP48_RS01120 () | 21910..22478 | + | 569 | Protein_28 | DUF1472 domain-containing protein | - |
| FVP48_RS01125 () | 22574..22876 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| FVP48_RS01130 () | 22923..23345 | + | 423 | WP_001378618.1 | DUF1380 family protein | - |
| FVP48_RS01135 () | 23342..23533 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| FVP48_RS01140 () | 23604..23918 | + | 315 | WP_005112260.1 | hypothetical protein | - |
| FVP48_RS01145 () | 24302..24829 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| FVP48_RS01150 () | 24887..25120 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| FVP48_RS01155 () | 25179..27137 | + | 1959 | WP_001145488.1 | ParB/RepB/Spo0J family partition protein | - |
| FVP48_RS01160 () | 27192..27626 | + | 435 | WP_001387500.1 | conjugation system SOS inhibitor PsiB | - |
| FVP48_RS01165 () | 27623..28342 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| FVP48_RS01170 () | 28339..28935 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| FVP48_RS01175 () | 29039..29476 | + | 438 | Protein_39 | DUF1472 domain-containing protein | - |
| FVP48_RS01180 () | 29397..29897 | + | 501 | WP_000117611.1 | antirestriction protein ArdA | - |
| FVP48_RS01185 () | 30626..31060 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| FVP48_RS01190 () | 31154..31420 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| FVP48_RS01195 () | 31597..31986 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| FVP48_RS01200 () | 31983..32897 | + | 915 | WP_000038348.1 | Recombination-promoting nuclease RpnA | VF |
| FVP48_RS01205 () | 32959..33165 | + | 207 | WP_000150314.1 | hypothetical protein | VF |
| FVP48_RS01210 () | 33196..33447 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| FVP48_RS01215 () | 33481..33678 | - | 198 | WP_001161107.1 | hypothetical protein | - |
| FVP48_RS01220 () | 34027..34875 | + | 849 | WP_001077053.1 | DUF4942 domain-containing protein | - |
| FVP48_RS01225 () | 34962..35297 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| FVP48_RS01230 () | 35531..35863 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| FVP48_RS01235 () | 35874..38573 | + | 2700 | WP_001387486.1 | Protein TraI | Relaxase |
| FVP48_RS01240 () | 38610..40901 | - | 2292 | WP_001289278.1 | conjugal transfer protein TrbC | - |
| FVP48_RS01245 () | 40894..41964 | - | 1071 | WP_000151588.1 | IncI1-type conjugal transfer protein TrbB | - |
| FVP48_RS01250 () | 41983..43191 | - | 1209 | WP_000121263.1 | hypothetical protein | VF |
| FVP48_RS01255 () | 43498..44589 | - | 1092 | WP_000426061.1 | hypothetical protein | - |
| - () | 44792..44854 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 44792..44854 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 44792..44854 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 44792..44854 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| FVP48_RS01260 () | 44904..45056 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| FVP48_RS01265 () | 45128..45379 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| FVP48_RS01270 () | 45679..45975 | + | 297 | WP_001275298.1 | hypothetical protein | - |
| FVP48_RS01275 () | 46040..46216 | - | 177 | WP_001054898.1 | hypothetical protein | - |
| FVP48_RS01280 () | 46399..46608 | - | 210 | WP_001140543.1 | hemolysin expression modulator Hha | - |
| FVP48_RS01285 () | 46706..47320 | - | 615 | WP_000578648.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| FVP48_RS01290 () | 47396..49564 | - | 2169 | WP_000698360.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| FVP48_RS01295 () | 49661..50245 | - | 585 | WP_001037983.1 | IncI1-type conjugal transfer protein TraX | - |
| FVP48_RS01300 () | 50274..51476 | - | 1203 | WP_001387490.1 | IncI1-type conjugal transfer protein TraW | - |
| FVP48_RS01305 () | 51443..52057 | - | 615 | WP_000337395.1 | IncI1-type conjugal transfer protein TraV | - |
| FVP48_RS01310 () | 52057..55101 | - | 3045 | WP_001024789.1 | IncI1-type conjugal transfer protein TraU | - |
| FVP48_RS01315 () | 55191..55991 | - | 801 | WP_001164783.1 | IncI1-type conjugal transfer protein TraT | - |
| FVP48_RS01320 () | 55975..56163 | - | 189 | WP_001277253.1 | putative conjugal transfer protein TraS | - |
| FVP48_RS01325 () | 56227..56631 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| FVP48_RS01330 () | 56682..57209 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| FVP48_RS01335 () | 57209..57913 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| FVP48_RS01340 () | 57913..59202 | - | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| FVP48_RS01345 () | 59205..60188 | - | 984 | WP_001191879.1 | hypothetical protein | VF |
| FVP48_RS01350 () | 60199..60891 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| FVP48_RS01355 () | 60888..61235 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| FVP48_RS01360 () | 61253..65017 | - | 3765 | WP_001141540.1 | DNA primase | - |
| FVP48_RS01365 () | 65107..65658 | - | 552 | WP_000014586.1 | Phospholipase D | VF |
| FVP48_RS01370 () | 65673..65963 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| FVP48_RS01375 () | 65960..67108 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| FVP48_RS01380 () | 67105..67923 | - | 819 | WP_000646098.1 | hypothetical protein | VF |
| FVP48_RS01385 () | 67920..68378 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| FVP48_RS01390 () | 68773..69357 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| FVP48_RS01395 () | 69417..70574 | - | 1158 | WP_173002233.1 | conjugal transfer protein TraF | - |
| FVP48_RS01400 () | 70818..71642 | - | 825 | WP_001238932.1 | conjugal transfer protein TraE | - |
| FVP48_RS01405 () | 71793..72947 | - | 1155 | WP_001139956.1 | integrase | - |
| FVP48_RS01410 () | 73075..73230 | + | 156 | WP_001302705.1 | hypothetical protein | - |
| FVP48_RS01415 () | 73227..74561 | - | 1335 | WP_077132313.1 | hypothetical protein | VF |
| FVP48_RS01420 () | 74561..75217 | - | 657 | WP_001193549.1 | hypothetical protein | VF |
| FVP48_RS01425 () | 75202..75762 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| FVP48_RS01430 () | 75772..76386 | - | 615 | WP_000908227.1 | hypothetical protein | VF |
| FVP48_RS01435 () | 76403..77488 | - | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| FVP48_RS01440 () | 77501..79054 | - | 1554 | WP_000362206.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| FVP48_RS01445 () | 79065..79517 | - | 453 | WP_001247337.1 | hypothetical protein | VF |
| FVP48_RS01450 () | 79504..80799 | - | 1296 | WP_000752782.1 | type 4b pilus protein PilO2 | - |
| FVP48_RS01455 () | 80792..82474 | - | 1683 | WP_000748144.1 | Outer membrane lipoprotein BfpB | VF |
| FVP48_RS01460 () | 82488..82925 | - | 438 | WP_000539806.1 | hypothetical protein | VF |
| FVP48_RS01465 () | 82925..83992 | - | 1068 | WP_001360287.1 | hypothetical protein | VF |
| FVP48_RS01470 () | 85039..85293 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| FVP48_RS01475 () | 85465..86148 | - | 684 | WP_000213862.1 | conjugal transfer protein TraC | - |
| FVP48_RS01480 () | 86402..86935 | - | 534 | WP_001372168.1 | transcription termination factor NusG | - |
| FVP48_RS01485 () | 87377..87664 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| FVP48_RS01490 () | 87582..87845 | - | 264 | WP_001387472.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|