MGE detailed information
MGE type: Conjugative plasmid MGE length: 93878 bp
Accession: NZ_CP042351 Location: 1..93878 Organism: Escherichia coli strain RM9513 Replicon: plasmid pRM9513
Accession: NZ_CP042351 Location: 1..93878 Organism: Escherichia coli strain RM9513 Replicon: plasmid pRM9513
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FS836_RS00005 (59) | 59..1428 | + | 1370 | WP_085947770.1 | IS3-like element IS150 family transposase | - |
| FS836_RS00010 (1471) | 1471..1620 | + | 150 | Protein_1 | DUF5431 family protein | - |
| FS836_RS00015 (1571) | 1571..1687 | + | 117 | WP_001375150.1 | type I toxin-antitoxin system Hok family toxin | - |
| FS836_RS00020 (1988) | 1988..2284 | - | 297 | Protein_3 | hypothetical protein | - |
| FS836_RS00025 (2354) | 2354..2560 | + | 207 | WP_000547965.1 | hypothetical protein | - |
| FS836_RS00030 (2585) | 2585..2872 | + | 288 | WP_000107542.1 | hypothetical protein | - |
| FS836_RS00035 (2991) | 2991..3812 | + | 822 | WP_001234475.1 | DUF932 domain-containing protein | - |
| FS836_RS00040 (4107) | 4107..4697 | - | 591 | WP_001375132.1 | hypothetical protein | VF |
| FS836_RS00045 (5030) | 5030..5413 | + | 384 | WP_130091583.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| FS836_RS00050 (5600) | 5600..6289 | + | 690 | WP_050858640.1 | conjugal transfer transcriptional regulator TraJ | - |
| FS836_RS00055 (6382) | 6382..6783 | + | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| FS836_RS00060 (6816) | 6816..7175 | + | 360 | WP_000994781.1 | type IV conjugative transfer system pilin TraA | - |
| FS836_RS00065 (7190) | 7190..7501 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| FS836_RS00070 (7523) | 7523..8089 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| FS836_RS00075 (8076) | 8076..8804 | + | 729 | WP_040084588.1 | type-F conjugative transfer system secretin TraK | - |
| FS836_RS00080 (8804) | 8804..10231 | + | 1428 | WP_021545202.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| FS836_RS00085 (10221) | 10221..10811 | + | 591 | WP_265467036.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| FS836_RS00090 (10798) | 10798..10995 | + | 198 | WP_265467038.1 | conjugal transfer protein TrbD | - |
| FS836_RS00095 (11007) | 11007..11258 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| FS836_RS00100 (11255) | 11255..11770 | + | 516 | WP_130091582.1 | type IV conjugative transfer system lipoprotein TraV | - |
| FS836_RS00105 (11905) | 11905..12126 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| FS836_RS00110 (12286) | 12286..14913 | + | 2628 | WP_098712860.1 | type IV secretion system protein TraC | - |
| FS836_RS00115 (14910) | 14910..15296 | + | 387 | WP_265467043.1 | type-F conjugative transfer system protein TrbI | - |
| FS836_RS00120 (15293) | 15293..15925 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| FS836_RS00125 (15922) | 15922..16914 | + | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| FS836_RS00130 (16923) | 16923..17561 | + | 639 | WP_032191777.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| FS836_RS00135 (17558) | 17558..19366 | + | 1809 | WP_130091581.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| FS836_RS00140 (19393) | 19393..19650 | + | 258 | WP_130091584.1 | conjugal transfer protein TrbE | - |
| FS836_RS00145 (19643) | 19643..20386 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| FS836_RS00150 (20402) | 20402..20749 | + | 348 | WP_265467044.1 | conjugal transfer protein TrbA | - |
| FS836_RS00155 (20868) | 20868..21152 | + | 285 | WP_130091579.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| FS836_RS00160 (21139) | 21139..21684 | + | 546 | WP_130091578.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| FS836_RS00165 (21614) | 21614..21955 | + | 342 | WP_130091577.1 | P-type conjugative transfer protein TrbJ | - |
| FS836_RS00170 (21942) | 21942..22334 | + | 393 | WP_000138368.1 | F-type conjugal transfer protein TrbF | - |
| FS836_RS00175 (22321) | 22321..23694 | + | 1374 | WP_130091575.1 | conjugal transfer pilus assembly protein TraH | - |
| FS836_RS00180 (23691) | 23691..26513 | + | 2823 | WP_130091574.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| FS836_RS00185 (26529) | 26529..27014 | + | 486 | WP_265467049.1 | surface exclusion protein | - |
| FS836_RS00190 (27063) | 27063..27794 | + | 732 | WP_265467051.1 | conjugal transfer complement resistance protein TraT | - |
| FS836_RS00195 (27998) | 27998..28477 | + | 480 | WP_130091597.1 | hypothetical protein | - |
| FS836_RS00200 (28759) | 28759..30975 | + | 2217 | WP_265467053.1 | type IV conjugative transfer system coupling protein TraD | - |
| FS836_RS00205 (30975) | 30975..36245 | + | 5271 | WP_155849735.1 | Multifunctional conjugation protein TraI | Relaxase |
| FS836_RS00210 (36265) | 36265..37011 | + | 747 | WP_130091596.1 | conjugal transfer pilus acetylase TraX | - |
| FS836_RS00215 (37066) | 37066..37626 | + | 561 | WP_096977265.1 | fertility inhibition protein FinO | - |
| FS836_RS00220 (37756) | 37756..37967 | + | 212 | Protein_43 | hypothetical protein | - |
| FS836_RS00225 (38213) | 38213..38281 | + | 69 | Protein_44 | endonuclease | - |
| - (38543) | 38543..38602 | - | 60 | NuclAT_1 | - | - |
| - (38543) | 38543..38602 | - | 60 | NuclAT_1 | - | - |
| - (38543) | 38543..38602 | - | 60 | NuclAT_1 | - | - |
| - (38543) | 38543..38602 | - | 60 | NuclAT_1 | - | - |
| FS836_RS00230 (38647) | 38647..38796 | + | 150 | WP_001312851.1 | Hok/Gef family protein | - |
| FS836_RS00235 (39118) | 39118..39420 | + | 303 | WP_001346256.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| FS836_RS00240 (39411) | 39411..39893 | + | 483 | WP_000405252.1 | GNAT family N-acetyltransferase | Toxin Detail |
| FS836_RS00245 (40203) | 40203..40460 | + | 258 | WP_000083826.1 | replication regulatory protein RepA | - |
| FS836_RS00250 (40496) | 40496..40729 | - | 234 | WP_226058127.1 | replication protein RepA | - |
| FS836_RS00255 (40720) | 40720..40767 | + | 48 | WP_235246954.1 | hypothetical protein | - |
| FS836_RS00260 (40760) | 40760..41617 | + | 858 | WP_140436363.1 | incFII family plasmid replication initiator RepA | - |
| FS836_RS00265 (42592) | 42592..42831 | + | 240 | WP_155849733.1 | MarR family transcriptional regulator | - |
| FS836_RS00270 (43446) | 43446..45212 | + | 1767 | WP_155849732.1 | Hemolysin transporter protein ShlB | VF |
| FS836_RS00275 (45225) | 45225..54668 | + | 9444 | WP_265467060.1 | tRNA nuclease CdiA | VF |
| FS836_RS00280 (54661) | 54661..54921 | + | 261 | WP_000038919.1 | hypothetical protein | - |
| FS836_RS00285 (55269) | 55269..55653 | - | 385 | Protein_56 | transposase | - |
| FS836_RS00290 (55800) | 55800..57028 | + | 1229 | WP_102384962.1 | IS3 family transposase IS2 | Transposase |
| FS836_RS00295 (57952) | 57952..58509 | + | 558 | WP_000949484.1 | Type-1 fimbrial protein, A chain | VF |
| FS836_RS00300 (58570) | 58570..59118 | + | 549 | WP_000277046.1 | Type-1 fimbrial protein, A chain | VF |
| FS836_RS00305 (59139) | 59139..59894 | + | 756 | WP_001369992.1 | putative fimbrial chaperone SfmC | VF |
| FS836_RS00310 (59993) | 59993..62626 | + | 2634 | WP_001199196.1 | Outer membrane usher protein FimD | VF |
| FS836_RS00315 (62642) | 62642..63697 | + | 1056 | WP_001039059.1 | putative fimbrial-like protein SfmH | VF |
| FS836_RS00320 (63715) | 63715..64281 | + | 567 | WP_000987963.1 | putative fimbrial-like protein SfmF | VF |
| FS836_RS00325 (64916) | 64916..65503 | + | 588 | WP_089627132.1 | Tyrosine recombinase XerD | VF |
| FS836_RS00330 (65800) | 65800..67293 | - | 1494 | WP_265467020.1 | putative signaling protein | VF |
| FS836_RS00335 (68122) | 68122..68715 | - | 594 | WP_000166787.1 | Tyrosine recombinase XerD | VF |
| FS836_RS00340 (69616) | 69616..69726 | + | 111 | WP_224068057.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FS836_RS00345 (69820) | 69820..69978 | + | 159 | WP_170997425.1 | transcriptional regulator | - |
| FS836_RS00350 (70099) | 70099..70839 | + | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| FS836_RS00355 (71124) | 71124..72101 | - | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
| FS836_RS00360 (72859) | 72859..73554 | + | 696 | Protein_71 | hypothetical protein | - |
| FS836_RS00365 (73713) | 73713..74453 | - | 741 | WP_000933099.1 | abortive infection family protein | - |
| FS836_RS00370 (74489) | 74489..75070 | - | 582 | WP_225395751.1 | DUF2971 domain-containing protein | - |
| FS836_RS00375 (75086) | 75086..75277 | - | 192 | Protein_74 | hypothetical protein | - |
| FS836_RS00380 (75274) | 75274..75894 | - | 621 | WP_001248529.1 | hypothetical protein | - |
| FS836_RS00385 (75891) | 75891..76574 | - | 684 | WP_010891291.1 | DNA-binding protein | - |
| FS836_RS00390 (76811) | 76811..77973 | + | 1163 | WP_085947771.1 | IS3 family transposase IS3 | Transposase |
| FS836_RS00395 (78303) | 78303..78521 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| FS836_RS00400 (78523) | 78523..78828 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| FS836_RS00405 (78829) | 78829..79635 | + | 807 | WP_024243979.1 | site-specific integrase | - |
| FS836_RS00410 (79682) | 79682..80326 | + | 645 | WP_001477618.1 | replication initiation protein RepE | - |
| FS836_RS00415 (80914) | 80914..82080 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| FS836_RS00420 (82080) | 82080..83051 | + | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| FS836_RS00425 (83875) | 83875..84776 | + | 902 | Protein_84 | DUF1281 domain-containing protein | - |
| FS836_RS00430 (84780) | 84780..85085 | + | 306 | WP_010892536.1 | hypothetical protein | - |
| FS836_RS00435 (85162) | 85162..85845 | + | 684 | WP_000085939.1 | DNA methylase | - |
| FS836_RS00440 (85846) | 85846..86067 | + | 222 | WP_001104904.1 | hypothetical protein | - |
| FS836_RS00445 (85961) | 85961..86515 | + | 555 | WP_001358893.1 | DUF1380 family protein | - |
| FS836_RS00450 (86561) | 86561..87337 | + | 777 | WP_001005032.1 | hypothetical protein | - |
| FS836_RS00455 (87751) | 87751..88176 | + | 426 | WP_001198920.1 | antirestriction protein | - |
| FS836_RS00460 (88223) | 88223..88645 | + | 423 | WP_000271685.1 | DUF1380 family protein | - |
| FS836_RS00465 (88642) | 88642..88833 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| FS836_RS00470 (88803) | 88803..89312 | - | 510 | WP_071600123.1 | hypothetical protein | - |
| FS836_RS00475 (89630) | 89630..90169 | + | 540 | WP_000290801.1 | single-stranded DNA-binding protein | - |
| FS836_RS00480 (90226) | 90226..90459 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| FS836_RS00485 (90525) | 90525..92480 | + | 1956 | WP_130091614.1 | ParB/RepB/Spo0J family partition protein | - |
| FS836_RS00490 (92535) | 92535..92969 | + | 435 | WP_000845928.1 | conjugation system SOS inhibitor PsiB | - |
| FS836_RS00495 (92966) | 92966..93728 | + | 763 | Protein_98 | plasmid SOS inhibition protein A | - |
| - (93697) | 93697..93871 | + | 175 | NuclAT_0 | - | - |
| - (93697) | 93697..93871 | + | 175 | NuclAT_0 | - | - |
| - (93697) | 93697..93871 | + | 175 | NuclAT_0 | - | - |
| - (93697) | 93697..93871 | + | 175 | NuclAT_0 | - | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|