MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 114322 bp
Accession: NZ_CP041451 Location: 1..114322 Organism: Escherichia coli strain YPE3 Replicon: plasmid pYPE3-114k
Accession: NZ_CP041451 Location: 1..114322 Organism: Escherichia coli strain YPE3 Replicon: plasmid pYPE3-114k
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNP78_RS00030 () | 1675..1887 | - | 213 | WP_073503561.1 | hypothetical protein | - |
| FNP78_RS00035 () | 1887..2222 | - | 336 | WP_094312814.1 | hypothetical protein | - |
| FNP78_RS00045 () | 2438..2713 | - | 276 | WP_001265407.1 | hypothetical protein | - |
| FNP78_RS00050 () | 2769..3194 | - | 426 | WP_000125192.1 | hypothetical protein | - |
| FNP78_RS00055 () | 3274..5613 | - | 2340 | WP_151164907.1 | recombinase RecA | - |
| FNP78_RS00060 () | 5616..5882 | - | 267 | WP_000920225.1 | hypothetical protein | - |
| FNP78_RS00065 () | 5882..6826 | - | 945 | WP_077108707.1 | exonuclease | - |
| FNP78_RS00070 () | 6887..7915 | - | 1029 | WP_032328850.1 | hypothetical protein | - |
| FNP78_RS00075 () | 8033..8464 | - | 432 | WP_151164908.1 | hypothetical protein | - |
| FNP78_RS00085 () | 9004..9567 | + | 564 | WP_052988641.1 | hypothetical protein | - |
| FNP78_RS00090 () | 9598..13104 | - | 3507 | WP_151164909.1 | DNA polymerase III subunit alpha | - |
| FNP78_RS00100 () | 13285..14520 | - | 1236 | WP_151164910.1 | AAA family ATPase | - |
| FNP78_RS00105 () | 14616..16724 | - | 2109 | WP_151164911.1 | cobalamin biosynthesis protein CobT | - |
| FNP78_RS00110 () | 16823..17035 | - | 213 | WP_151164912.1 | hypothetical protein | - |
| FNP78_RS00115 () | 17287..17673 | + | 387 | WP_001282576.1 | transcriptional regulator | - |
| FNP78_RS00120 () | 17668..18771 | - | 1104 | WP_000797845.1 | site-specific integrase | - |
| FNP78_RS00125 () | 18982..19227 | - | 246 | WP_000156433.1 | GrxA family glutaredoxin | - |
| FNP78_RS00130 () | 19224..19574 | - | 351 | WP_025670480.1 | hypothetical protein | - |
| FNP78_RS00150 () | 21134..21424 | - | 291 | WP_000067985.1 | hypothetical protein | - |
| FNP78_RS00155 () | 21570..21785 | - | 216 | WP_000636535.1 | hypothetical protein | - |
| FNP78_RS00160 () | 21782..23104 | - | 1323 | WP_073503567.1 | DNA ligase | - |
| FNP78_RS23835 () | 23139..23614 | - | 476 | Protein_22 | hypothetical protein | - |
| FNP78_RS00170 () | 23695..24507 | - | 813 | WP_032187677.1 | hypothetical protein | - |
| FNP78_RS00175 () | 24603..24972 | - | 370 | Protein_24 | IS3 family transposase ISEhe3 | Transposase |
| FNP78_RS00180 () | 25171..26153 | + | 983 | Protein_25 | IS3 family transposase ISEc36 | Transposase |
| FNP78_RS00185 () | 26290..26841 | + | 552 | WP_151164913.1 | fimbrial protein YehD | - |
| FNP78_RS00190 () | 26897..27577 | + | 681 | WP_032187672.1 | putative fimbrial chaperone YehC | VF |
| FNP78_RS00195 () | 27595..30081 | + | 2487 | WP_096261919.1 | Outer membrane usher protein YehB | VF |
| FNP78_RS00200 () | 30092..31102 | + | 1011 | WP_151164914.1 | type 1 fimbrial protein | - |
| FNP78_RS00205 () | 31287..31508 | + | 222 | WP_001603498.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| FNP78_RS00210 () | 31508..31885 | + | 378 | WP_053291281.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| FNP78_RS00220 () | 32019..33134 | - | 1116 | WP_171764655.1 | DNA primase | - |
| FNP78_RS00225 () | 33291..34631 | - | 1341 | WP_023135655.1 | AAA family ATPase | - |
| FNP78_RS00230 () | 34692..35417 | - | 726 | WP_151164915.1 | hypothetical protein | - |
| FNP78_RS00235 () | 35701..36468 | + | 768 | WP_000342417.1 | hypothetical protein | - |
| FNP78_RS00240 () | 36521..36874 | - | 354 | WP_160378290.1 | hypothetical protein | - |
| FNP78_RS00245 () | 36880..37548 | - | 669 | WP_000161228.1 | AAA family ATPase | - |
| FNP78_RS00250 () | 37969..38238 | + | 270 | WP_016582626.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| FNP78_RS00255 () | 38263..38766 | + | 504 | WP_172754447.1 | GNAT family N-acetyltransferase | Toxin Detail |
| FNP78_RS23840 () | 38794..39000 | - | 207 | WP_023316023.1 | hypothetical protein | - |
| FNP78_RS23845 () | 38951..39202 | - | 252 | WP_000147960.1 | hypothetical protein | - |
| FNP78_RS00265 () | 39204..39896 | - | 693 | WP_151164916.1 | hypothetical protein | - |
| FNP78_RS00270 () | 39910..40233 | - | 324 | WP_032084070.1 | hypothetical protein | - |
| FNP78_RS00275 () | 40308..41090 | - | 783 | WP_151164917.1 | receptor-recognizing protein | - |
| FNP78_RS23850 () | 41157..41810 | - | 654 | WP_191963540.1 | tail fiber domain-containing protein | - |
| FNP78_RS00285 () | 42501..44063 | - | 1563 | Protein_46 | chaperone of endosialidase | - |
| FNP78_RS00290 () | 44826..44972 | - | 147 | Protein_47 | tail fiber protein | - |
| FNP78_RS00305 () | 46428..51155 | - | 4728 | WP_151164918.1 | DUF1983 domain-containing protein | - |
| FNP78_RS00310 () | 51174..51767 | - | 594 | WP_001293195.1 | tail assembly protein | - |
| FNP78_RS00315 () | 51755..52552 | - | 798 | WP_001405045.1 | C40 family peptidase | - |
| FNP78_RS00320 () | 52545..53243 | - | 699 | WP_000511445.1 | phage minor tail protein L | - |
| FNP78_RS00325 () | 53326..53661 | - | 336 | WP_151164919.1 | phage tail protein | - |
| FNP78_RS00330 () | 53704..58233 | - | 4530 | WP_151164920.1 | tape measure protein | - |
| FNP78_RS00335 () | 58241..58465 | - | 225 | WP_000952686.1 | hypothetical protein | - |
| FNP78_RS00340 () | 58591..58908 | - | 318 | WP_000163860.1 | hypothetical protein | - |
| FNP78_RS00345 () | 58963..59709 | - | 747 | WP_033566656.1 | Ig domain-containing protein | - |
| FNP78_RS00350 () | 59784..60167 | - | 384 | WP_000469440.1 | minor capsid protein | - |
| FNP78_RS00355 () | 60169..60642 | - | 474 | WP_139444547.1 | hypothetical protein | - |
| FNP78_RS00360 () | 60633..60977 | - | 345 | WP_001027663.1 | hypothetical protein | - |
| FNP78_RS00365 () | 61057..61890 | - | 834 | WP_000057118.1 | hypothetical protein | - |
| FNP78_RS00370 () | 61890..62324 | - | 435 | WP_021520524.1 | hypothetical protein | - |
| FNP78_RS00375 () | 62369..63289 | - | 921 | WP_021520523.1 | Ig domain-containing protein | - |
| FNP78_RS00380 () | 63363..64238 | - | 876 | WP_001130339.1 | hypothetical protein | - |
| FNP78_RS00385 () | 64264..65151 | - | 888 | WP_151164921.1 | hypothetical protein | - |
| FNP78_RS00390 () | 65173..66747 | - | 1575 | WP_053904527.1 | phage portal protein | - |
| FNP78_RS00395 () | 66774..68030 | - | 1257 | WP_001007299.1 | phage terminase large subunit | - |
| FNP78_RS00400 () | 68030..68662 | - | 633 | WP_000215413.1 | hypothetical protein | - |
| FNP78_RS00405 () | 68858..69124 | - | 267 | WP_000176292.1 | hypothetical protein | - |
| FNP78_RS00410 () | 69134..70024 | - | 891 | WP_151164922.1 | hypothetical protein | - |
| FNP78_RS00415 () | 70021..70686 | - | 666 | WP_001717191.1 | ATP-binding cassette domain-containing protein | - |
| FNP78_RS00420 () | 70683..71351 | - | 669 | WP_000161986.1 | ParB/Srx family N-terminal domain-containing protein | - |
| FNP78_RS00425 () | 71351..72031 | - | 681 | WP_021547990.1 | ParB N-terminal domain-containing protein | - |
| FNP78_RS00430 () | 72114..73673 | + | 1560 | WP_097335221.1 | DEAD/DEAH box helicase | - |
| FNP78_RS00435 () | 73676..73954 | + | 279 | WP_001291061.1 | hypothetical protein | - |
| FNP78_RS00440 () | 73987..74586 | + | 600 | WP_001308871.1 | hypothetical protein | - |
| FNP78_RS00445 () | 74889..75479 | + | 591 | WP_151164923.1 | hypothetical protein | - |
| FNP78_RS00450 () | 75479..76000 | + | 522 | WP_063122771.1 | transcriptional regulator | - |
| FNP78_RS00455 () | 76326..76976 | + | 651 | WP_151164924.1 | hypothetical protein | - |
| FNP78_RS00460 () | 77024..77254 | + | 231 | WP_094337988.1 | hypothetical protein | - |
| FNP78_RS00470 () | 77869..78351 | - | 483 | WP_001009193.1 | hypothetical protein | - |
| FNP78_RS00475 () | 78702..79076 | - | 375 | WP_001755487.1 | hypothetical protein | - |
| FNP78_RS00480 () | 79194..79589 | - | 396 | WP_077127647.1 | hypothetical protein | - |
| FNP78_RS00485 () | 79716..80027 | - | 312 | WP_000749406.1 | hypothetical protein | - |
| FNP78_RS00490 () | 80181..80510 | - | 330 | WP_032203350.1 | hypothetical protein | - |
| FNP78_RS00495 () | 82073..82372 | - | 300 | WP_000932312.1 | hypothetical protein | - |
| FNP78_RS00500 () | 82534..84567 | - | 2034 | WP_032335025.1 | methionine--tRNA ligase | - |
| FNP78_RS00505 () | 84725..85825 | + | 1101 | WP_000004356.1 | iron-sulfur cluster carrier protein ApbC | - |
| FNP78_RS00510 () | 85862..86251 | - | 390 | WP_000506720.1 | DNA repair protein | - |
| FNP78_RS00515 () | 86350..86601 | - | 252 | WP_001755493.1 | DNA polymerase III subunit theta | - |
| FNP78_RS00525 () | 86959..88515 | + | 1557 | WP_151164925.1 | type I restriction-modification system subunit M | - |
| FNP78_RS00530 () | 88512..89693 | + | 1182 | WP_151164926.1 | restriction endonuclease subunit S | - |
| FNP78_RS00535 () | 89816..92932 | + | 3117 | WP_151164927.1 | HsdR family type I site-specific deoxyribonuclease | - |
| FNP78_RS00540 () | 92927..93440 | - | 514 | Protein_93 | DNA modification methylase | - |
| FNP78_RS00545 () | 93606..94220 | - | 615 | WP_025670504.1 | hypothetical protein | - |
| FNP78_RS00555 () | 94559..95128 | - | 570 | WP_112919513.1 | hypothetical protein | - |
| FNP78_RS00560 () | 95268..95426 | - | 159 | WP_014962273.1 | DUF3927 family protein | - |
| FNP78_RS00565 () | 95426..95851 | - | 426 | WP_025670506.1 | tellurite resistance TerB family protein | - |
| FNP78_RS00570 () | 95945..96133 | - | 189 | WP_023145165.1 | hypothetical protein | - |
| FNP78_RS00575 () | 96143..96637 | - | 495 | WP_089632760.1 | hypothetical protein | - |
| FNP78_RS00580 () | 96783..97376 | - | 594 | WP_001755502.1 | ribonuclease HI | - |
| FNP78_RS00585 () | 97960..98190 | - | 231 | WP_000121543.1 | hypothetical protein | - |
| FNP78_RS00590 () | 98376..98969 | - | 594 | WP_014962277.1 | phage N-6-adenine-methyltransferase | - |
| FNP78_RS00595 () | 99153..99962 | - | 810 | WP_151164928.1 | hypothetical protein | - |
| FNP78_RS00600 () | 100123..100677 | - | 555 | WP_052988644.1 | 3'-5' exonuclease | - |
| FNP78_RS00605 () | 100687..101106 | - | 420 | WP_012640764.1 | hypothetical protein | - |
| FNP78_RS00610 () | 101168..101812 | - | 645 | WP_000386470.1 | AAA family ATPase | - |
| FNP78_RS00615 () | 101812..102288 | - | 477 | WP_000781810.1 | dihydrofolate reductase | - |
| FNP78_RS00620 () | 102285..102686 | - | 402 | WP_000289389.1 | hypothetical protein | - |
| FNP78_RS00625 () | 102700..103803 | - | 1104 | WP_191963539.1 | thymidylate synthase | - |
| FNP78_RS00630 () | 103974..104843 | - | 870 | WP_021520143.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| FNP78_RS00635 () | 104921..106063 | - | 1143 | WP_151164930.1 | ribonucleotide-diphosphate reductase subunit beta | - |
| FNP78_RS00640 () | 106170..108485 | - | 2316 | WP_097515983.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
| FNP78_RS00645 () | 108559..109128 | - | 570 | WP_022644977.1 | hypothetical protein | - |
| FNP78_RS00650 () | 109138..109881 | - | 744 | WP_047579074.1 | hypothetical protein | - |
| FNP78_RS00655 () | 109871..111787 | - | 1917 | WP_151164931.1 | AAA family ATPase | - |
| FNP78_RS00665 () | 112017..113102 | - | 1086 | WP_000174803.1 | metallophosphoesterase | - |
| FNP78_RS00670 () | 113357..114001 | - | 645 | WP_000364573.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|