MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 163111 bp
Accession: NZ_CP040928 Location: 1..163111 Organism: Escherichia coli strain YY76-1 Replicon: plasmid pYY76-1-1
Accession: NZ_CP040928 Location: 1..163111 Organism: Escherichia coli strain YY76-1 Replicon: plasmid pYY76-1-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FH040_RS22285 () | 1..1056 | + | 1056 | WP_001711119.1 | replication protein RepA | - |
| FH040_RS22290 () | 1666..1878 | - | 213 | WP_063122723.1 | hypothetical protein | - |
| FH040_RS22295 () | 1878..2213 | - | 336 | WP_072662960.1 | hypothetical protein | - |
| FH040_RS22300 () | 2210..2389 | - | 180 | WP_077580900.1 | hypothetical protein | - |
| FH040_RS22305 () | 2429..2704 | - | 276 | WP_023135696.1 | hypothetical protein | - |
| FH040_RS22310 () | 2884..3516 | - | 633 | Protein_5 | IS3 family transposase ISLad1 | Transposase |
| FH040_RS22315 () | 3585..6602 | - | 3018 | WP_148245959.1 | type I restriction endonuclease subunit R | - |
| FH040_RS22320 () | 6617..7780 | - | 1164 | WP_063085660.1 | DUF4268 domain-containing protein | - |
| FH040_RS22325 () | 7790..9070 | - | 1281 | WP_113388158.1 | restriction endonuclease subunit S | - |
| FH040_RS22330 () | 9088..11517 | - | 2430 | WP_113388149.1 | type I restriction-modification system subunit M | - |
| FH040_RS22335 () | 11759..11941 | - | 183 | Protein_10 | SPFH/Band 7/PHB domain protein | - |
| FH040_RS22340 () | 11945..12145 | - | 201 | WP_113388150.1 | hypothetical protein | - |
| FH040_RS22345 () | 12236..14575 | - | 2340 | WP_148245960.1 | recombinase RecA | - |
| FH040_RS22350 () | 14578..14844 | - | 267 | WP_000920226.1 | hypothetical protein | - |
| FH040_RS22355 () | 14844..15788 | - | 945 | WP_023135728.1 | exonuclease | - |
| FH040_RS22360 () | 15849..16865 | - | 1017 | WP_123902826.1 | regulator | - |
| FH040_RS22365 () | 16985..17416 | - | 432 | WP_053292493.1 | hypothetical protein | - |
| FH040_RS22370 () | 17526..18086 | + | 561 | WP_049885240.1 | DNA-binding protein | - |
| FH040_RS22375 () | 18115..21621 | - | 3507 | WP_089075257.1 | DNA polymerase III subunit alpha | - |
| FH040_RS22385 () | 21802..23037 | - | 1236 | WP_097558678.1 | AAA family ATPase | - |
| FH040_RS22390 () | 23133..25457 | - | 2325 | WP_148245961.1 | porphyrin biosynthesis protein | - |
| FH040_RS22395 () | 25570..25782 | - | 213 | WP_024172742.1 | hypothetical protein | - |
| FH040_RS22400 () | 26039..26428 | + | 390 | WP_003980690.1 | hypothetical protein | - |
| FH040_RS22405 () | 26423..27526 | - | 1104 | WP_096313690.1 | site-specific integrase | - |
| FH040_RS22410 () | 27778..28482 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| FH040_RS22415 () | 28550..30229 | - | 1680 | Protein_25 | Tn3 family transposase TnpA_Tn3 | Transposase |
| FH040_RS22420 () | 30393..30950 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| FH040_RS22425 () | 31133..31993 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| FH040_RS22430 () | 32140..32421 | + | 282 | Protein_28 | transposase zinc-binding domain-containing protein | - |
| FH040_RS22440 () | 32591..33295 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| FH040_RS22450 () | 33345..34064 | + | 720 | Protein_30 | helicase RepA family protein | - |
| FH040_RS22455 () | 34051..34902 | + | 852 | WP_000240536.1 | replication protein | - |
| FH040_RS22465 () | 35210..36025 | + | 816 | WP_063816876.1 | Dihydropteroate synthase | ARG |
| FH040_RS22470 () | 36086..36889 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| FH040_RS22475 () | 36889..37725 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| FH040_RS22480 () | 37786..38490 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| FH040_RS22485 () | 38502..39506 | - | 1005 | WP_148245962.1 | IS91 family transposase ISAzo26 | Transposase |
| FH040_RS22490 () | 39651..40148 | + | 498 | WP_001083725.1 | Dihydrofolate reductase | ARG |
| FH040_RS22495 () | 40260..40550 | + | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| FH040_RS22500 () | 40556..41347 | + | 792 | WP_001206356.1 | Streptomycin 3''-adenylyltransferase | ARG |
| FH040_RS22505 () | 41511..41858 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| FH040_RS22510 () | 41852..42691 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| FH040_RS22520 () | 42819..43022 | + | 204 | WP_000376616.1 | hypothetical protein | - |
| FH040_RS22525 () | 43178..44383 | + | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| FH040_RS22530 () | 44394..44699 | + | 306 | WP_000130000.1 | hypothetical protein | Relaxase |
| FH040_RS23755 () | 44743..44808 | + | 66 | Protein_45 | EAL domain-containing protein | - |
| FH040_RS22540 () | 44926..45690 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| FH040_RS22555 () | 46183..46767 | - | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| FH040_RS22560 () | 46767..48005 | - | 1239 | WP_000004159.1 | MFS transporter | - |
| FH040_RS22565 () | 48002..48907 | - | 906 | WP_000219391.1 | hypothetical protein | ARG |
| FH040_RS22575 () | 49029..49733 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| FH040_RS22580 () | 49905..50420 | - | 516 | WP_032187680.1 | hypothetical protein | - |
| FH040_RS22595 () | 51493..51798 | - | 306 | WP_023135645.1 | hypothetical protein | - |
| FH040_RS22605 () | 51947..52153 | - | 207 | WP_003980695.1 | hypothetical protein | - |
| FH040_RS22610 () | 52260..53096 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| FH040_RS22615 () | 53096..53899 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| FH040_RS22625 () | 55147..56661 | - | 1515 | Protein_57 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| FH040_RS22630 () | 56727..57431 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| FH040_RS22635 () | 57484..58086 | - | 603 | Protein_59 | IS91 family transposase ISAzo26 | Transposase |
| FH040_RS22640 () | 58232..59023 | + | 792 | WP_001206356.1 | Streptomycin 3''-adenylyltransferase | ARG |
| FH040_RS22645 () | 59155..59967 | + | 813 | WP_065799592.1 | hypothetical protein | ARG |
| FH040_RS22650 () | 59979..60683 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| FH040_RS23955 () | 61108..61554 | + | 447 | Protein_63 | DUF3363 domain-containing protein | - |
| FH040_RS22665 () | 61771..62985 | + | 1215 | WP_058657119.1 | Bicyclomycin resistance protein | ARG |
| FH040_RS22670 () | 63013..63318 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| FH040_RS22675 () | 63430..64923 | + | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| FH040_RS22680 () | 65091..65795 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| FH040_RS22685 () | 65839..66990 | + | 1152 | Protein_68 | RepB family DNA primase | - |
| FH040_RS22690 () | 67239..68537 | - | 1299 | Protein_69 | Tn3 family transposase TnpA_Tn3 | Transposase |
| FH040_RS22695 () | 68605..69309 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| FH040_RS22700 () | 69645..69872 | + | 228 | Protein_71 | IS1 family transposase IS1X2 | Transposase |
| FH040_RS22705 () | 70020..70724 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| FH040_RS22710 () | 71059..71451 | + | 393 | WP_000084745.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| FH040_RS22715 () | 71771..72157 | - | 387 | WP_063102497.1 | bleomycin binding protein | - |
| FH040_RS22720 () | 72325..73029 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| FH040_RS22725 () | 73180..73995 | + | 816 | WP_000018329.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| FH040_RS22730 () | 74187..74884 | - | 698 | Protein_77 | IS1 family transposase | - |
| FH040_RS22735 () | 74916..75605 | - | 690 | Protein_78 | sodium/glutamate symporter | - |
| FH040_RS22740 () | 76049..76369 | + | 321 | WP_000562370.1 | antibiotic biosynthesis monooxygenase | - |
| FH040_RS22745 () | 76362..76748 | + | 387 | WP_000460651.1 | hypothetical protein | - |
| FH040_RS22750 () | 76756..77442 | + | 687 | WP_001447544.1 | winged helix-turn-helix domain-containing protein | - |
| FH040_RS22755 () | 77420..78043 | - | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| FH040_RS22760 () | 78125..79330 | + | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| FH040_RS22765 () | 79443..79754 | - | 312 | Protein_84 | transposase | - |
| FH040_RS22770 () | 79810..80507 | + | 698 | Protein_85 | IS1 family transposase | - |
| FH040_RS22775 () | 80525..81070 | + | 546 | Protein_86 | sodium/glutamate symporter | - |
| FH040_RS22780 () | 81301..81420 | + | 120 | Protein_87 | LysR family transcriptional regulator | - |
| FH040_RS22785 () | 81436..82644 | - | 1209 | WP_001352368.1 | IS4 family transposase IS10R | Transposase |
| FH040_RS22795 () | 82753..85524 | + | 2772 | Protein_89 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| FH040_RS22805 () | 85728..87050 | - | 1323 | WP_063078607.1 | hypothetical protein | - |
| FH040_RS23760 () | 87085..87560 | - | 476 | Protein_91 | hypothetical protein | - |
| FH040_RS22815 () | 87641..88453 | - | 813 | WP_032187677.1 | hypothetical protein | - |
| FH040_RS22820 () | 88549..88918 | - | 370 | Protein_93 | IS3 family transposase ISEhe3 | Transposase |
| FH040_RS22825 () | 89118..90100 | + | 983 | Protein_94 | IS3 family transposase ISEc36 | Transposase |
| FH040_RS22830 () | 90242..90790 | + | 549 | WP_148245964.1 | fimbrial protein YehD | - |
| FH040_RS22835 () | 90846..91526 | + | 681 | WP_148245968.1 | putative fimbrial chaperone YehC | VF |
| FH040_RS22840 () | 91544..94030 | + | 2487 | WP_148245965.1 | Outer membrane usher protein YehB | VF |
| FH040_RS22845 () | 94041..95051 | + | 1011 | WP_063078605.1 | type 1 fimbrial protein | - |
| FH040_RS22850 () | 95236..95457 | + | 222 | WP_001603498.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| FH040_RS22855 () | 95457..95834 | + | 378 | WP_053291281.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| FH040_RS22865 () | 95968..97083 | - | 1116 | WP_032187668.1 | DNA primase | - |
| FH040_RS22870 () | 97240..98580 | - | 1341 | WP_023135655.1 | AAA family ATPase | - |
| FH040_RS22875 () | 98641..99366 | - | 726 | WP_032187666.1 | hypothetical protein | - |
| FH040_RS22880 () | 99649..100416 | + | 768 | WP_001711193.1 | hypothetical protein | - |
| FH040_RS22885 () | 100469..100822 | - | 354 | WP_161953766.1 | hypothetical protein | - |
| FH040_RS22890 () | 100828..101493 | - | 666 | WP_023135658.1 | AAA family ATPase | - |
| FH040_RS22895 () | 101813..102082 | + | 270 | WP_001711191.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| FH040_RS22900 () | 102090..102611 | + | 522 | WP_077580870.1 | GNAT family N-acetyltransferase | Toxin Detail |
| FH040_RS22910 () | 102780..103031 | - | 252 | WP_023135660.1 | hypothetical protein | - |
| FH040_RS22915 () | 103034..103726 | - | 693 | WP_148245966.1 | hypothetical protein | - |
| FH040_RS22920 () | 103740..104063 | - | 324 | WP_077580871.1 | hypothetical protein | - |
| FH040_RS22925 () | 104197..104778 | - | 582 | WP_077580872.1 | tail fiber assembly protein | - |
| FH040_RS22930 () | 104787..105691 | - | 905 | Protein_113 | macro domain-containing protein | - |
| FH040_RS22935 () | 105688..106644 | - | 957 | Protein_114 | phage tail protein | - |
| FH040_RS23765 () | 107155..108375 | - | 1221 | Protein_115 | phage tail protein | - |
| FH040_RS22950 () | 108897..110417 | - | 1521 | WP_077248950.1 | DUF1983 domain-containing protein | - |
| FH040_RS22955 () | 110482..112041 | + | 1560 | WP_033546628.1 | DEAD/DEAH box helicase | - |
| FH040_RS22960 () | 112044..112322 | + | 279 | WP_001711179.1 | hypothetical protein | - |
| FH040_RS22965 () | 112382..112804 | + | 423 | WP_024172705.1 | hypothetical protein | - |
| FH040_RS22970 () | 112809..112973 | + | 165 | Protein_120 | transcriptional regulator | - |
| FH040_RS22975 () | 112980..113837 | - | 858 | Protein_121 | IS3 family transposase ISCfr6 | Transposase |
| FH040_RS22980 () | 113906..114886 | + | 981 | WP_000019445.1 | IS5 family transposase ISKpn26 | Transposase |
| FH040_RS22985 () | 115080..115784 | - | 705 | WP_112901319.1 | helix-turn-helix domain-containing protein | - |
| FH040_RS22990 () | 116091..116788 | - | 698 | Protein_124 | IS1 family transposase | - |
| FH040_RS22995 () | 116844..117095 | + | 252 | Protein_125 | IS200/IS605 family transposase | - |
| FH040_RS23000 () | 117286..117480 | - | 195 | WP_053273080.1 | hypothetical protein | - |
| FH040_RS23005 () | 117782..118479 | - | 698 | Protein_127 | IS1 family transposase | - |
| FH040_RS23010 () | 118534..118806 | - | 273 | Protein_128 | RepA protein | - |
| FH040_RS23015 () | 119079..120797 | - | 1719 | WP_063116709.1 | hybrid sensor histidine kinase/response regulator | - |
| FH040_RS23020 () | 120794..121282 | - | 489 | WP_000238872.1 | molybdopterin-dependent oxidoreductase | - |
| FH040_RS23025 () | 121275..122258 | - | 984 | WP_001245143.1 | hypothetical protein | - |
| FH040_RS23030 () | 122262..123176 | - | 915 | WP_000891983.1 | response regulator | - |
| FH040_RS23035 () | 123490..123798 | + | 309 | WP_000062770.1 | hypothetical protein | - |
| FH040_RS23040 () | 123791..124006 | + | 216 | WP_001112907.1 | hypothetical protein | - |
| FH040_RS23045 () | 124009..124671 | + | 663 | WP_000958205.1 | Type IV secretion system protein virB1 | VF |
| FH040_RS23050 () | 124682..124981 | + | 300 | WP_000175462.1 | TrbC/VirB2 family protein | - |
| FH040_RS23055 () | 124991..127741 | + | 2751 | WP_063078619.1 | Type IV secretion system protein virB4 | VF |
| FH040_RS23060 () | 127760..128476 | + | 717 | WP_000770034.1 | type IV secretion system protein | - |
| FH040_RS23065 () | 128488..128772 | + | 285 | WP_000769859.1 | EexN family lipoprotein | - |
| FH040_RS23070 () | 128790..129797 | + | 1008 | WP_000014166.1 | type IV secretion system protein | - |
| FH040_RS23770 () | 129874..130014 | + | 141 | WP_000873539.1 | hypothetical protein | - |
| FH040_RS23075 () | 130007..130693 | + | 687 | WP_023281070.1 | type IV secretion system protein | - |
| FH040_RS23080 () | 130686..131579 | + | 894 | WP_001045307.1 | P-type conjugative transfer protein VirB9 | - |
| FH040_RS23085 () | 131576..132772 | + | 1197 | WP_000980841.1 | Type IV secretion system protein virB10 | VF |
| FH040_RS23090 () | 132776..133825 | + | 1050 | WP_000342114.1 | Type IV secretion system protein VirB11 | VF |
| FH040_RS23095 () | 133812..134213 | + | 402 | WP_000979494.1 | hypothetical protein | - |
| FH040_RS23100 () | 134304..134621 | + | 318 | WP_000683352.1 | hypothetical protein | - |
| FH040_RS23105 () | 134648..134983 | + | 336 | WP_000610141.1 | hypothetical protein | - |
| FH040_RS23110 () | 134959..135267 | + | 309 | WP_000212005.1 | hypothetical protein | - |
| FH040_RS23115 () | 135264..137465 | + | 2202 | WP_023281073.1 | type IA DNA topoisomerase | - |
| FH040_RS23120 () | 137462..137854 | + | 393 | WP_001079960.1 | H-NS histone family protein | - |
| FH040_RS23125 () | 138563..140470 | + | 1908 | WP_023281074.1 | TraM recognition domain-containing protein | - |
| FH040_RS23130 () | 140485..141231 | + | 747 | WP_000909125.1 | hypothetical protein | - |
| FH040_RS23135 () | 141224..141751 | + | 528 | WP_001232861.1 | Phospholipase D | VF |
| FH040_RS23140 () | 141783..142214 | - | 432 | WP_001776120.1 | hypothetical protein | - |
| FH040_RS23775 () | 142346..142522 | - | 177 | WP_013438824.1 | hypothetical protein | - |
| FH040_RS23145 () | 142694..143659 | - | 966 | WP_023281075.1 | DUF1738 domain-containing protein | - |
| FH040_RS23150 () | 144153..145373 | + | 1221 | WP_080217907.1 | ISL3 family transposase ISKox3 | Transposase |
| FH040_RS23780 () | 145435..145545 | + | 111 | Protein_159 | peptidase | - |
| FH040_RS23160 () | 145662..145850 | + | 189 | WP_000957857.1 | hypothetical protein | - |
| FH040_RS23165 () | 145860..147059 | + | 1200 | WP_112901278.1 | IS91 family transposase ISSbo1 | Transposase |
| FH040_RS23170 () | 147230..148270 | - | 1041 | Protein_162 | hypothetical protein | - |
| FH040_RS23175 () | 148535..149500 | - | 966 | WP_000725192.1 | ParB/RepB/Spo0J family partition protein | - |
| FH040_RS23180 () | 149497..150702 | - | 1206 | WP_000817632.1 | Plasmid partition protein A | VF |
| FH040_RS23185 () | 151102..151962 | - | 861 | WP_021546926.1 | replication protein RepA | - |
| FH040_RS23190 () | 152344..152736 | - | 393 | WP_001281116.1 | hypothetical protein | - |
| FH040_RS23785 () | 152748..152903 | - | 156 | WP_152922752.1 | hypothetical protein | - |
| FH040_RS23195 () | 153017..153997 | - | 981 | WP_000019445.1 | IS5 family transposase ISKpn26 | Transposase |
| FH040_RS23200 () | 154051..155289 | + | 1239 | WP_112901307.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| FH040_RS23205 () | 155338..156195 | - | 858 | Protein_170 | phosphoribosyl-ATP pyrophosphohydrolase | - |
| FH040_RS23210 () | 156461..157030 | - | 570 | WP_025670519.1 | hypothetical protein | - |
| FH040_RS23215 () | 157361..158107 | - | 747 | WP_106509445.1 | hypothetical protein | - |
| FH040_RS23220 () | 158097..160013 | - | 1917 | WP_032187695.1 | AAA family ATPase | - |
| FH040_RS23230 () | 160243..161328 | - | 1086 | WP_112901305.1 | metallophosphoesterase | - |
| FH040_RS23235 () | 161725..162369 | - | 645 | WP_023135693.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|