MGE detailed information
MGE type: Conjugative plasmid MGE length: 90871 bp
Accession: NZ_CP040807 Location: 1..90871 Organism: Escherichia fergusonii strain EFCF056 Replicon: plasmid pEF02
Accession: NZ_CP040807 Location: 1..90871 Organism: Escherichia fergusonii strain EFCF056 Replicon: plasmid pEF02
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8Z79_RS23450 () | 1..876 | + | 876 | WP_015387340.1 | hypothetical protein | ARG |
| D8Z79_RS23455 () | 923..1399 | - | 477 | WP_013023839.1 | WbuC family cupin fold metalloprotein | - |
| D8Z79_RS23460 () | 1658..2387 | - | 730 | Protein_2 | class A beta-lactamase | - |
| D8Z79_RS23465 () | 2441..3145 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| D8Z79_RS23470 () | 3528..3944 | + | 417 | WP_014839980.1 | Metallothiol transferase FosB | ARG |
| D8Z79_RS23475 () | 3949..4467 | - | 519 | WP_014839979.1 | hypothetical protein | - |
| D8Z79_RS23480 () | 4467..5255 | - | 789 | WP_014839978.1 | winged helix-turn-helix domain-containing protein | - |
| D8Z79_RS23485 () | 5275..5745 | - | 471 | WP_049824851.1 | TetR family transcriptional regulator | - |
| D8Z79_RS26160 () | 5755..6458 | - | 704 | Protein_8 | IS6 family transposase IS15DI | Transposase |
| D8Z79_RS23505 () | 6522..7058 | + | 537 | Protein_9 | class A beta-lactamase | - |
| D8Z79_RS23510 () | 7228..7983 | + | 756 | WP_012372818.1 | hypothetical protein | ARG |
| D8Z79_RS23515 () | 8109..8812 | + | 704 | Protein_11 | IS6 family transposase IS15DI | Transposase |
| D8Z79_RS23525 () | 8864..10630 | + | 1767 | Protein_12 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| D8Z79_RS23530 () | 10709..11712 | + | 1004 | Protein_13 | IS110 family transposase IS5075 | Transposase |
| D8Z79_RS23535 () | 11894..12070 | - | 177 | WP_000954592.1 | Arm DNA-binding domain-containing protein | - |
| D8Z79_RS23545 () | 12400..13215 | + | 816 | WP_001043260.1 | hypothetical protein | ARG |
| D8Z79_RS23550 () | 13276..14079 | + | 804 | WP_001082319.1 | hypothetical protein | ARG |
| D8Z79_RS23555 () | 14079..14915 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| D8Z79_RS23565 () | 15221..15463 | + | 243 | WP_000844627.1 | transposase | - |
| D8Z79_RS23570 () | 15495..16144 | - | 650 | Protein_19 | tetracycline resistance transcriptional repressor TetR(A) | - |
| D8Z79_RS23575 () | 16250..17449 | + | 1200 | WP_139535894.1 | Multidrug resistance protein MdtG | ARG |
| D8Z79_RS23580 () | 17416..17603 | - | 188 | Protein_21 | IS91 family transposase | - |
| D8Z79_RS23585 () | 17715..18019 | - | 305 | Protein_22 | LysR family transcriptional regulator | - |
| D8Z79_RS23590 () | 18047..19261 | - | 1215 | WP_023300759.1 | Multidrug resistance protein MdtL | ARG |
| D8Z79_RS23595 () | 19478..20361 | - | 884 | Protein_24 | DUF3363 domain-containing protein | - |
| D8Z79_RS23600 () | 20392..21884 | - | 1493 | Protein_25 | IS91 family transposase ISVsa3 | Transposase |
| D8Z79_RS23605 () | 22094..22318 | - | 225 | WP_000743213.1 | hypothetical protein | - |
| D8Z79_RS23610 () | 22315..23052 | - | 738 | WP_001446887.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| D8Z79_RS26165 () | 23538..23678 | - | 141 | WP_001044210.1 | hypothetical protein | - |
| D8Z79_RS23620 () | 23684..24387 | - | 704 | Protein_29 | IS6 family transposase IS15DI | Transposase |
| D8Z79_RS23625 () | 24659..25335 | + | 677 | Protein_30 | class 1 integron integrase IntI1 | - |
| D8Z79_RS23630 () | 25401..26105 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| D8Z79_RS23635 () | 26171..26716 | + | 546 | Protein_32 | Tn3 family transposase TnpA_Tn3 | Transposase |
| D8Z79_RS23640 () | 26752..27167 | - | 416 | Protein_33 | IS1 family transposase IS1R | Transposase |
| D8Z79_RS23645 () | 27416..27817 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| D8Z79_RS23650 () | 27750..28007 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| D8Z79_RS23655 () | 28100..28753 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| D8Z79_RS23665 () | 29692..30549 | - | 858 | WP_032495102.1 | incFII family plasmid replication initiator RepA | - |
| D8Z79_RS23670 () | 30542..30616 | - | 75 | WP_001375168.1 | RepA leader peptide Tap | - |
| D8Z79_RS23680 () | 30861..31109 | - | 249 | WP_000083837.1 | replication regulatory protein RepA | - |
| D8Z79_RS23685 () | 31393..31542 | - | 150 | WP_001312851.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 31587..31646 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 31587..31646 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 31587..31646 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 31587..31646 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| D8Z79_RS23695 () | 31847..32077 | - | 231 | WP_001736714.1 | hypothetical protein | - |
| D8Z79_RS23700 () | 32241..32840 | - | 600 | WP_032083981.1 | hypothetical protein | - |
| D8Z79_RS23705 () | 33226..33426 | - | 201 | WP_015059022.1 | hypothetical protein | - |
| D8Z79_RS23710 () | 33558..34118 | - | 561 | WP_000139328.1 | fertility inhibition protein FinO | - |
| D8Z79_RS23715 () | 34173..34919 | - | 747 | WP_000205770.1 | conjugal transfer pilus acetylase TraX | - |
| D8Z79_RS23720 () | 34939..40209 | - | 5271 | WP_061093447.1 | ATP-dependent RecD-like DNA helicase | Relaxase |
| D8Z79_RS23725 () | 40209..42452 | - | 2244 | WP_072646483.1 | type IV conjugative transfer system coupling protein TraD | - |
| D8Z79_RS23730 () | 42503..43240 | - | 738 | WP_015059020.1 | hypothetical protein | - |
| D8Z79_RS23735 () | 43443..44174 | - | 732 | WP_021559024.1 | complement resistance protein TraT | - |
| D8Z79_RS23740 () | 44199..44720 | - | 522 | WP_000632668.1 | conjugal transfer entry exclusion protein TraS | - |
| D8Z79_RS23745 () | 44753..47568 | - | 2816 | Protein_51 | conjugal transfer mating pair stabilization protein TraG | - |
| D8Z79_RS23750 () | 47565..48938 | - | 1374 | WP_000944325.1 | conjugal transfer protein TraH | - |
| D8Z79_RS23755 () | 48925..49317 | - | 393 | WP_000126338.1 | F-type conjugal transfer protein TrbF | - |
| D8Z79_RS23760 () | 49271..49645 | - | 375 | WP_071776752.1 | P-type conjugative transfer protein TrbJ | - |
| D8Z79_RS23765 () | 49575..50120 | - | 546 | WP_000059817.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| D8Z79_RS23770 () | 50107..50388 | - | 282 | WP_000549793.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| D8Z79_RS23775 () | 50504..51247 | - | 744 | WP_015059017.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| D8Z79_RS23780 () | 51240..51497 | - | 258 | WP_053913405.1 | conjugal transfer protein TrbE | - |
| D8Z79_RS23785 () | 51524..53374 | - | 1851 | WP_015059015.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| D8Z79_RS23790 () | 53371..53793 | - | 423 | WP_001229309.1 | HNH endonuclease | - |
| D8Z79_RS23795 () | 53819..54190 | - | 372 | WP_000056336.1 | hypothetical protein | - |
| D8Z79_RS23800 () | 54187..54825 | - | 639 | WP_000087532.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| D8Z79_RS23805 () | 54852..55373 | - | 522 | WP_015059014.1 | hypothetical protein | - |
| D8Z79_RS23810 () | 55436..55744 | - | 309 | WP_000412447.1 | hypothetical protein | - |
| D8Z79_RS23815 () | 55771..56763 | - | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| D8Z79_RS23820 () | 56760..57392 | - | 633 | WP_001203735.1 | type-F conjugative transfer system protein TraW | - |
| D8Z79_RS23825 () | 57389..57775 | - | 387 | WP_015059013.1 | type-F conjugative transfer system protein TrbI | - |
| D8Z79_RS23830 () | 57772..60399 | - | 2628 | WP_015059012.1 | type IV secretion system protein TraC | - |
| D8Z79_RS23835 () | 60559..60780 | - | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| D8Z79_RS23840 () | 60915..61430 | - | 516 | WP_000809902.1 | type IV conjugative transfer system lipoprotein TraV | - |
| D8Z79_RS23845 () | 61427..61678 | - | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| D8Z79_RS23850 () | 61690..61920 | - | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| D8Z79_RS23855 () | 61874..62464 | - | 591 | WP_000002778.1 | conjugal transfer protein TraP | - |
| D8Z79_RS23860 () | 62454..63881 | - | 1428 | WP_032297072.1 | conjugal transfer protein TraB | - |
| D8Z79_RS23865 () | 63881..64585 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| D8Z79_RS23870 () | 64596..65162 | - | 567 | WP_000399794.1 | type IV conjugative transfer system protein TraE | - |
| D8Z79_RS23875 () | 65184..65495 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| D8Z79_RS23880 () | 65510..65875 | - | 366 | WP_021519752.1 | type IV conjugative transfer system pilin TraA | - |
| D8Z79_RS23885 () | 65909..66136 | - | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| D8Z79_RS23890 () | 66230..66916 | - | 687 | WP_015059009.1 | PAS domain-containing protein | - |
| D8Z79_RS23895 () | 67107..67490 | - | 384 | WP_000124981.1 | relaxosome protein TraM | - |
| D8Z79_RS23900 () | 67767..68414 | + | 648 | WP_015059008.1 | hypothetical protein | VF |
| D8Z79_RS23905 () | 68711..69532 | - | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| D8Z79_RS23910 () | 69643..69939 | - | 297 | WP_001272251.1 | hypothetical protein | - |
| D8Z79_RS26170 () | 70239..70616 | + | 378 | Protein_85 | hypothetical protein | - |
| D8Z79_RS23930 () | 70854..71012 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 71056..71280 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 71056..71280 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 71056..71280 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 71056..71280 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| D8Z79_RS26175 () | 71092..71271 | + | 180 | WP_001309233.1 | hypothetical protein | - |
| D8Z79_RS23935 () | 71292..72011 | - | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| D8Z79_RS23940 () | 72008..72442 | - | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| D8Z79_RS23945 () | 72511..74534 | - | 2024 | Protein_90 | ParB/RepB/Spo0J family partition protein | - |
| D8Z79_RS23950 () | 74595..74828 | - | 234 | WP_000006003.1 | DUF905 family protein | - |
| D8Z79_RS23955 () | 74886..75413 | - | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| D8Z79_RS26180 () | 75715..76170 | + | 456 | Protein_93 | hypothetical protein | - |
| D8Z79_RS23980 () | 76256..76819 | - | 564 | WP_015059007.1 | class I SAM-dependent methyltransferase | - |
| D8Z79_RS23985 () | 76866..78227 | - | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| D8Z79_RS23990 () | 78279..78509 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| D8Z79_RS24000 () | 79909..80490 | + | 582 | Protein_97 | reverse transcriptase N-terminal domain-containing protein | - |
| D8Z79_RS24005 () | 80663..81574 | + | 912 | WP_139535895.1 | HNH endonuclease | - |
| D8Z79_RS24010 () | 81888..82079 | - | 192 | WP_001027493.1 | hypothetical protein | - |
| D8Z79_RS24015 () | 82076..82498 | - | 423 | WP_000271762.1 | DUF1380 family protein | - |
| D8Z79_RS24020 () | 82545..82847 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| D8Z79_RS26185 () | 83388..84164 | - | 777 | WP_001383963.1 | hypothetical protein | - |
| D8Z79_RS24035 () | 84215..84649 | - | 435 | WP_000274503.1 | DUF1380 family protein | - |
| D8Z79_RS24040 () | 84663..84884 | - | 222 | WP_001104881.1 | hypothetical protein | - |
| D8Z79_RS24045 () | 84885..85568 | - | 684 | WP_000085883.1 | DNA methylase | - |
| D8Z79_RS24055 () | 85645..85938 | - | 294 | WP_032146011.1 | hypothetical protein | - |
| D8Z79_RS24060 () | 86085..87047 | + | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| D8Z79_RS24065 () | 87050..87400 | + | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| D8Z79_RS24070 () | 87523..87804 | - | 282 | WP_001333089.1 | hypothetical protein | - |
| D8Z79_RS24075 () | 87932..88166 | - | 235 | Protein_110 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| D8Z79_RS26190 () | 89615..89680 | - | 66 | Protein_111 | IS1 family transposase | - |
| D8Z79_RS24095 () | 89746..90450 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|