MGE detailed information
MGE type: Prophage MGE length: 21422 bp
Accession: NZ_CP040664 Location: 1618743..1640164 Organism: Escherichia coli strain KR2009 Replicon: chromosome
Accession: NZ_CP040664 Location: 1618743..1640164 Organism: Escherichia coli strain KR2009 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FE384_RS07895 () | 1615258..1616004 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| FE384_RS07900 () | 1616093..1616779 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| FE384_RS07905 () | 1616956..1617159 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| FE384_RS07910 () | 1617194..1618654 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| FE384_RS07915 () | 1618743..1620110 | - | 1368 | Protein_1538 | MHS family MFS transporter | - |
| FE384_RS07920 () | 1620539..1620772 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| FE384_RS07925 () | 1621089..1621679 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| FE384_RS07930 () | 1621777..1622352 | - | 576 | WP_138817854.1 | tail fiber assembly protein | - |
| FE384_RS07935 () | 1622352..1623314 | - | 963 | WP_001027733.1 | phage tail protein | - |
| FE384_RS07940 () | 1623265..1623834 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| FE384_RS07945 () | 1624223..1624456 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| FE384_RS07950 () | 1624514..1624924 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| FE384_RS07955 () | 1625076..1625249 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| FE384_RS07960 () | 1625421..1625576 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| FE384_RS07965 () | 1625655..1625720 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| FE384_RS07970 () | 1625723..1625911 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| FE384_RS07975 () | 1625922..1626134 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| FE384_RS07980 () | 1626497..1626994 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| FE384_RS07985 () | 1626991..1627524 | - | 534 | WP_001092971.1 | lysozyme | - |
| FE384_RS07990 () | 1627521..1627832 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| FE384_RS07995 () | 1627837..1628052 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| FE384_RS22480 () | 1628272..1628442 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| FE384_RS08000 () | 1628795..1629010 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| FE384_RS08005 () | 1629311..1629523 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| FE384_RS08010 () | 1629578..1629667 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| FE384_RS08015 () | 1629945..1630697 | - | 753 | WP_001047135.1 | antitermination protein | - |
| FE384_RS08020 () | 1630711..1631760 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| FE384_RS08025 () | 1631762..1632040 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| FE384_RS08030 () | 1632107..1632358 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| FE384_RS08035 () | 1632575..1632730 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| FE384_RS08040 () | 1632802..1633089 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| FE384_RS08045 () | 1633089..1633328 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| FE384_RS08050 () | 1633353..1633658 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| FE384_RS08055 () | 1633861..1634193 | + | 333 | WP_001301033.1 | protein FlxA | - |
| FE384_RS08060 () | 1634630..1634779 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| FE384_RS08065 () | 1634814..1635092 | - | 279 | Protein_1569 | hypothetical protein | - |
| FE384_RS08070 () | 1635076..1635306 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| FE384_RS08075 () | 1635390..1635797 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| FE384_RS08080 () | 1635964..1636119 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| FE384_RS08085 () | 1636279..1636497 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| FE384_RS08095 () | 1637065..1637253 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| FE384_RS08100 () | 1637250..1637441 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| FE384_RS08105 () | 1637534..1638301 | + | 768 | Protein_1576 | exonuclease | - |
| FE384_RS08110 () | 1638298..1638993 | + | 696 | Protein_1577 | IS3 family transposase IS2 | Transposase |
| FE384_RS08115 () | 1639007..1640164 | + | 1158 | Protein_1578 | Putative defective protein IntQ ; Integrase | Integrase |
| FE384_RS08125 () | 1640352..1641371 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| FE384_RS08130 () | 1641383..1642597 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| FE384_RS08135 () | 1642803..1643129 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| FE384_RS08140 () | 1643264..1643605 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| FE384_RS08145 () | 1643640..1644200 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| FE384_RS08150 () | 1644203..1644913 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.001 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.003 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.001 |