MGE detailed information
MGE type: Prophage MGE length: 61222 bp
Accession: NZ_CP040625 Location: 866564..927785 Organism: Staphylococcus aureus strain JKD6004-DR Replicon: chromosome
Accession: NZ_CP040625 Location: 866564..927785 Organism: Staphylococcus aureus strain JKD6004-DR Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FF960_RS04190 () | 862020..862253 | + | 234 | WP_000556760.1 | preprotein translocase subunit SecG | - |
| FF960_RS04195 () | 862369..863109 | + | 741 | WP_001165952.1 | carboxylesterase | - |
| FF960_RS04200 () | 863143..865515 | + | 2373 | WP_116100507.1 | ribonuclease R | - |
| FF960_RS04205 () | 865537..866001 | + | 465 | WP_001085185.1 | SsrA-binding protein SmpB | - |
| FF960_RS04215 () | 866564..867670 | - | 1107 | WP_106699245.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| FF960_RS04220 () | 867660..868463 | - | 804 | WP_000358990.1 | helix-turn-helix domain-containing protein | - |
| FF960_RS04225 () | 868599..868802 | + | 204 | WP_001045296.1 | transcriptional regulator | - |
| FF960_RS04230 () | 868838..869056 | + | 219 | WP_000163544.1 | helix-turn-helix domain-containing protein | - |
| FF960_RS04235 () | 869068..869214 | + | 147 | WP_000784885.1 | hypothetical protein | - |
| FF960_RS04240 () | 869207..869416 | + | 210 | WP_116100508.1 | pathogenicity island protein | Antitoxin Detail |
| FF960_RS04245 () | 869419..869739 | + | 321 | WP_001103942.1 | DUF1474 family protein | Toxin Detail |
| FF960_RS04250 () | 869803..870672 | + | 870 | WP_130826599.1 | primase alpha helix C-terminal domain-containing protein | - |
| FF960_RS04255 () | 870689..872158 | + | 1470 | WP_053040304.1 | virulence-associated E family protein | - |
| FF960_RS04260 () | 872437..872799 | + | 363 | WP_138663888.1 | pathogenicity island protein | - |
| FF960_RS04265 () | 872801..873064 | + | 264 | WP_001804819.1 | hypothetical protein | - |
| FF960_RS04270 () | 873066..873707 | + | 642 | WP_116100509.1 | pathogenicity island protein | - |
| FF960_RS04275 () | 874415..874759 | + | 345 | WP_001288442.1 | hypothetical protein | - |
| FF960_RS04280 () | 874790..875443 | + | 654 | WP_000214170.1 | hypothetical protein | - |
| FF960_RS04285 () | 875496..876023 | + | 528 | WP_000771361.1 | spore coat protein | - |
| FF960_RS04290 () | 876155..876367 | + | 213 | WP_001656917.1 | hypothetical protein | - |
| FF960_RS04295 () | 876364..876933 | + | 570 | WP_001293078.1 | terminase small subunit | - |
| FF960_RS04305 () | 877325..878509 | + | 1185 | WP_001820511.1 | Abi family protein | - |
| FF960_RS04310 () | 878750..879304 | - | 555 | WP_001035618.1 | DUF4888 domain-containing protein | - |
| FF960_RS04315 () | 879797..880711 | + | 915 | WP_000825515.1 | Iron(3+)-hydroxamate-binding protein FhuD | VF |
| FF960_RS04320 () | 880769..881617 | + | 849 | WP_000824908.1 | class I SAM-dependent methyltransferase | - |
| FF960_RS04330 () | 882682..883005 | - | 324 | WP_001058299.1 | hypothetical protein | - |
| FF960_RS15100 () | 883021..883274 | - | 254 | Protein_820 | hypothetical protein | - |
| FF960_RS04340 () | 883359..884086 | - | 728 | Protein_821 | DUF5067 domain-containing protein | - |
| FF960_RS04345 () | 884522..884677 | + | 156 | WP_001790158.1 | hypothetical protein | - |
| FF960_RS04350 () | 884685..885206 | + | 522 | WP_000608179.1 | hypothetical protein | - |
| FF960_RS04355 () | 885345..885875 | + | 531 | WP_001167175.1 | N-acetyltransferase | - |
| FF960_RS04360 () | 886138..888939 | + | 2802 | WP_001056228.1 | Clumping factor A | VF |
| FF960_RS04365 () | 889160..890686 | + | 1527 | WP_000791729.1 | Staphylocoagulase | VF |
| FF960_RS04370 () | 891037..892059 | + | 1023 | WP_000728056.1 | extracellular matrix protein-binding adhesin Emp | - |
| FF960_RS04375 () | 892394..892864 | + | 471 | WP_000824472.1 | hypothetical protein | VF |
| FF960_RS04380 () | 893205..893891 | + | 687 | WP_001548082.1 | thermonuclease family protein | - |
| FF960_RS04385 () | 894248..894448 | + | 201 | WP_001059082.1 | cold-shock protein | - |
| FF960_RS04390 () | 894944..895162 | - | 219 | WP_000005877.1 | hypothetical protein | - |
| FF960_RS04395 () | 895224..895508 | - | 285 | WP_001004395.1 | hypothetical protein | - |
| FF960_RS04400 () | 895596..896165 | - | 570 | WP_001106654.1 | hypothetical protein | - |
| FF960_RS04405 () | 896353..896541 | - | 189 | WP_000052078.1 | hypothetical protein | Toxin Detail |
| FF960_RS04410 () | 896570..896830 | - | 261 | WP_001059690.1 | hypothetical protein | Antitoxin Detail |
| FF960_RS04415 () | 897171..897374 | + | 204 | WP_000145163.1 | sterile alpha motif-like domain-containing protein | - |
| FF960_RS04420 () | 897371..897607 | - | 237 | WP_000368687.1 | hypothetical protein | - |
| FF960_RS04425 () | 897832..898413 | + | 582 | WP_001140686.1 | phosphoglycerate mutase family protein | - |
| FF960_RS04430 () | 898486..899103 | - | 618 | WP_000255564.1 | LysE/ArgO family amino acid transporter | - |
| FF960_RS04435 () | 899258..899752 | - | 495 | WP_000569884.1 | GNAT family N-acetyltransferase | - |
| FF960_RS04440 () | 900151..900573 | - | 423 | WP_000974460.1 | organic hydroperoxide resistance protein | - |
| FF960_RS04445 () | 900721..901437 | + | 717 | WP_000150017.1 | type I 3-dehydroquinate dehydratase | - |
| FF960_RS04450 () | 901520..902059 | + | 540 | WP_000422905.1 | nitroreductase | - |
| FF960_RS04455 () | 902209..902529 | - | 321 | WP_001190695.1 | thioredoxin family protein | - |
| FF960_RS04460 () | 902673..903029 | + | 357 | WP_000589549.1 | arsenate reductase family protein | - |
| FF960_RS04465 () | 903187..903567 | + | 381 | WP_000290486.1 | glycine cleavage system protein GcvH | - |
| FF960_RS04470 () | 903746..904333 | + | 588 | Protein_847 | DUF1963 domain-containing protein | - |
| FF960_RS04475 () | 904468..905553 | + | 1086 | WP_000868132.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| FF960_RS04480 () | 905550..907442 | + | 1893 | WP_001557544.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| FF960_RS04485 () | 907449..907826 | + | 378 | WP_000361059.1 | transposase | - |
| FF960_RS04490 () | 907977..908759 | + | 783 | WP_000067268.1 | Streptomycin 3''-adenylyltransferase | ARG |
| FF960_RS04495 () | 908885..909616 | - | 732 | WP_001072197.1 | rRNA adenine N-6-methyltransferase | ARG |
| FF960_RS04500 () | 909674..909733 | - | 60 | WP_181875734.1 | erythromycin resistance leader peptide | - |
| FF960_RS04510 () | 910125..910787 | + | 663 | WP_001092058.1 | class I SAM-dependent methyltransferase | - |
| FF960_RS04515 () | 911024..911311 | + | 288 | Protein_855 | DUF1963 domain-containing protein | - |
| FF960_RS04525 () | 912053..912439 | + | 387 | WP_001018962.1 | toprim domain-containing protein | - |
| FF960_RS04530 () | 912432..912728 | + | 297 | WP_001065801.1 | thioredoxin family protein | - |
| FF960_RS04535 () | 912978..914003 | + | 1026 | WP_000571218.1 | Methionine import ATP-binding protein MetN 2 | VF |
| FF960_RS04540 () | 913996..914691 | + | 696 | WP_000520233.1 | ABC transporter permease | - |
| FF960_RS04545 () | 914709..915530 | + | 822 | WP_000732326.1 | Methionine-binding lipoprotein MetQ | VF |
| FF960_RS04550 () | 915674..916894 | - | 1221 | WP_000264182.1 | Transposase from transposon Tn916 ; Integrase | Integrase |
| FF960_RS04555 () | 916982..917710 | - | 729 | WP_000733773.1 | Enterotoxin type A | VF |
| FF960_RS04560 () | 917734..918462 | - | 729 | WP_001033317.1 | Enterotoxin type A | VF |
| FF960_RS04565 () | 918637..919371 | - | 735 | WP_000142630.1 | helix-turn-helix domain-containing protein | - |
| FF960_RS04570 () | 919521..919733 | + | 213 | WP_001063624.1 | ISNCY family transposase ISH7A | Transposase |
| FF960_RS04575 () | 919734..920006 | + | 273 | WP_001138298.1 | helix-turn-helix domain-containing protein | - |
| FF960_RS04580 () | 920018..920164 | + | 147 | WP_000784885.1 | hypothetical protein | - |
| FF960_RS04585 () | 920157..920366 | + | 210 | WP_001058492.1 | hypothetical protein | Antitoxin Detail |
| FF960_RS04590 () | 920369..920662 | + | 294 | WP_001103946.1 | DUF1474 family protein | Toxin Detail |
| FF960_RS04595 () | 920750..921619 | + | 870 | WP_001002692.1 | primase alpha helix C-terminal domain-containing protein | - |
| FF960_RS04600 () | 921636..923093 | + | 1458 | WP_000432707.1 | virulence-associated E family protein | - |
| FF960_RS04605 () | 923395..923757 | + | 363 | WP_001039172.1 | hypothetical protein | - |
| FF960_RS04610 () | 923759..924043 | + | 285 | WP_000998180.1 | hypothetical protein | - |
| FF960_RS04615 () | 924040..924681 | + | 642 | WP_001019783.1 | hypothetical protein | - |
| FF960_RS04620 () | 925130..925471 | + | 342 | WP_001190616.1 | hypothetical protein | - |
| FF960_RS04625 () | 925483..926061 | + | 579 | WP_000846279.1 | hypothetical protein | - |
| FF960_RS04630 () | 926079..926297 | + | 219 | WP_000448776.1 | capsid morphogenesis B protein | - |
| FF960_RS04635 () | 926348..926875 | + | 528 | WP_138663889.1 | spore coat protein | - |
| FF960_RS04640 () | 927007..927219 | + | 213 | WP_025174984.1 | hypothetical protein | - |
| FF960_RS04645 () | 927216..927785 | + | 570 | WP_001281786.1 | terminase small subunit | - |
| FF960_RS04650 () | 928292..928483 | + | 192 | WP_138663909.1 | hypothetical protein | - |
| FF960_RS04655 () | 928467..929639 | - | 1173 | WP_000195429.1 | IS256-like element IS256 family transposase | - |
| FF960_RS04660 () | 929738..930064 | + | 327 | Protein_883 | pathogenicity island protein | - |
| FF960_RS04665 () | 930061..930489 | + | 429 | WP_000591858.1 | hypothetical protein | - |
| FF960_RS04670 () | 930476..931255 | + | 780 | WP_000705255.1 | hypothetical protein | - |
| FF960_RS04675 () | 931778..931972 | + | 195 | WP_000752917.1 | CsbD family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|