MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 93911 bp
Accession: NZ_CP040322 Location: 1..93911 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain PNCS014879 Replicon: plasmid p16-6397.1
Accession: NZ_CP040322 Location: 1..93911 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain PNCS014879 Replicon: plasmid p16-6397.1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5O16_RS24340 () | 1..741 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| E5O16_RS24345 () | 741..2162 | + | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| E5O16_RS24350 () | 2152..2748 | + | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| E5O16_RS24355 () | 2726..2971 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| E5O16_RS24360 () | 2968..3483 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| E5O16_RS24365 () | 3618..3839 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| E5O16_RS24370 () | 3832..4299 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| E5O16_RS24375 () | 4416..4679 | + | 264 | WP_001239256.1 | hypothetical protein | - |
| E5O16_RS24380 () | 4695..7343 | + | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| E5O16_RS24385 () | 7318..7704 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| E5O16_RS24390 () | 7701..8333 | + | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| E5O16_RS24395 () | 8330..9322 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| E5O16_RS24400 () | 9341..9649 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| E5O16_RS24405 () | 9634..10272 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| E5O16_RS24410 () | 10309..10728 | + | 420 | WP_001229397.1 | HNH endonuclease | - |
| E5O16_RS24415 () | 10725..12551 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| E5O16_RS24420 () | 12562..12777 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| E5O16_RS24425 () | 12789..13538 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| E5O16_RS24430 () | 13752..14045 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| E5O16_RS24435 () | 14032..14580 | + | 549 | WP_022743183.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| E5O16_RS24440 () | 14570..15952 | + | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| E5O16_RS24445 () | 15949..18771 | + | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| E5O16_RS24450 () | 18787..19281 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| E5O16_RS24455 () | 19317..20048 | + | 732 | WP_022743186.1 | complement resistance protein TraT | - |
| E5O16_RS24460 () | 20425..22695 | + | 2271 | WP_023139332.1 | type IV conjugative transfer system coupling protein TraD | - |
| E5O16_RS24465 () | 22704..23102 | - | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| E5O16_RS24470 () | 23102..23329 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| E5O16_RS24475 () | 23411..28669 | + | 5259 | WP_022743192.1 | conjugative transfer relaxase/helicase TraI | - |
| E5O16_RS24480 () | 28689..29429 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| E5O16_RS24485 () | 29484..30047 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| E5O16_RS24490 () | 30162..30446 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| E5O16_RS24495 () | 30459..30614 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| E5O16_RS24500 () | 30780..31222 | + | 443 | Protein_33 | phospholipase | - |
| E5O16_RS24510 () | 31401..31667 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| E5O16_RS24515 () | 31917..31994 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| E5O16_RS24520 () | 31975..32856 | + | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| E5O16_RS24530 () | 33716..33937 | + | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| E5O16_RS24535 () | 34034..34792 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| E5O16_RS24540 () | 35059..35616 | - | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| E5O16_RS24545 () | 35706..36605 | - | 900 | WP_010999938.1 | YjiK family protein | - |
| E5O16_RS25160 () | 36602..36748 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| E5O16_RS24555 () | 36738..37391 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| E5O16_RS24560 () | 37636..37986 | - | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| E5O16_RS24565 () | 37971..38183 | - | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| E5O16_RS24570 () | 38615..39490 | - | 876 | WP_014343944.1 | hypothetical protein | - |
| E5O16_RS24575 () | 39743..40300 | - | 558 | WP_010999940.1 | membrane protein | - |
| E5O16_RS24580 () | 40315..41007 | - | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| E5O16_RS24585 () | 41000..43408 | - | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| E5O16_RS24590 () | 43636..44154 | - | 519 | WP_000748205.1 | major pilin PefA | - |
| E5O16_RS24595 () | 44429..44731 | - | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| E5O16_RS24605 () | 45450..45831 | + | 382 | Protein_51 | YgiW/YdeI family stress tolerance OB fold protein | - |
| E5O16_RS24610 () | 46000..46444 | + | 445 | Protein_52 | site-specific integrase | - |
| E5O16_RS24615 () | 46703..47692 | - | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| E5O16_RS24620 () | 48186..48482 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| E5O16_RS24630 () | 48966..49487 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| E5O16_RS24635 () | 50163..50381 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| E5O16_RS24640 () | 50383..50688 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| E5O16_RS24645 () | 50690..50980 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| E5O16_RS24650 () | 50977..51498 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| E5O16_RS24655 () | 51533..52315 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| E5O16_RS24660 () | 52324..53037 | + | 714 | Protein_61 | EAL domain-containing protein | - |
| E5O16_RS24670 () | 53041..53550 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| E5O16_RS24675 () | 53544..54029 | + | 486 | WP_000905606.1 | membrane protein | - |
| E5O16_RS24680 () | 54306..54593 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| E5O16_RS24685 () | 54749..55309 | + | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| E5O16_RS24690 () | 55376..55726 | - | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| E5O16_RS24695 () | 55783..56207 | + | 425 | Protein_67 | IS200/IS605 family transposase | - |
| E5O16_RS24700 () | 56334..56984 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| E5O16_RS24705 () | 57245..57970 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| E5O16_RS24710 () | 58251..60026 | - | 1776 | WP_001676648.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| E5O16_RS25165 () | 60078..60245 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| E5O16_RS24715 () | 60208..60975 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| E5O16_RS24720 () | 61149..61313 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| E5O16_RS24725 () | 61487..62380 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| E5O16_RS24730 () | 62989..64026 | + | 1038 | WP_001121399.1 | IS630 family transposase | - |
| E5O16_RS24735 () | 64215..65240 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| E5O16_RS24740 () | 65173..66837 | - | 1665 | WP_000098783.1 | IS481 family transposase | - |
| E5O16_RS24745 () | 66821..67381 | - | 561 | WP_001240331.1 | recombinase family protein | - |
| E5O16_RS24750 () | 67588..68328 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| E5O16_RS24760 () | 68983..69471 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| E5O16_RS24765 () | 69730..70845 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| E5O16_RS24770 () | 70931..71347 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| E5O16_RS24775 () | 71531..71866 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| E5O16_RS24780 () | 71923..72489 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| E5O16_RS24785 () | 72521..73462 | - | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| E5O16_RS24790 () | 73877..75082 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| E5O16_RS24795 () | 75082..76056 | + | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| E5O16_RS24800 () | 76138..77412 | - | 1275 | WP_022743179.1 | Y-family DNA polymerase | - |
| E5O16_RS24805 () | 77412..77834 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| E5O16_RS24810 () | 78345..78815 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| E5O16_RS24815 () | 78808..79164 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| E5O16_RS24825 () | 79546..80226 | + | 681 | WP_000088645.1 | DNA methylase | - |
| E5O16_RS24830 () | 80226..80447 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| E5O16_RS24835 () | 80503..80916 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| E5O16_RS24840 () | 80988..81752 | + | 765 | WP_001246548.1 | membrane protein | - |
| E5O16_RS24850 () | 82248..82682 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| E5O16_RS24855 () | 82749..83183 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| E5O16_RS24860 () | 83419..83742 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| E5O16_RS24870 () | 84413..84931 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| E5O16_RS24875 () | 84986..85228 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| E5O16_RS24880 () | 85297..87294 | + | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| E5O16_RS24885 () | 87334..87768 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| E5O16_RS24890 () | 87765..88502 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| E5O16_RS25170 () | 88751..88909 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| E5O16_RS25175 () | 89012..89830 | + | 819 | Protein_105 | DUF945 domain-containing protein | - |
| E5O16_RS24905 () | 90141..90611 | - | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| E5O16_RS24915 () | 91026..91406 | + | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| E5O16_RS24920 () | 91599..92285 | + | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| E5O16_RS24925 () | 92380..92607 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| E5O16_RS24930 () | 92649..93011 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| E5O16_RS24935 () | 93026..93337 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|