MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 148043 bp
Accession: NZ_CP040172 Location: 2302852..2450894 Organism: Vibrio cholerae strain VC1374 Replicon: chromosome
Accession: NZ_CP040172 Location: 2302852..2450894 Organism: Vibrio cholerae strain VC1374 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDZ90_RS11250 () | 2298619..2299143 | + | 525 | WP_001226222.1 | inosine/xanthosine triphosphatase | - |
| FDZ90_RS11255 () | 2299221..2299532 | - | 312 | WP_000250616.1 | trp operon repressor | - |
| FDZ90_RS11260 () | 2299587..2301533 | - | 1947 | WP_000197615.1 | murein transglycosylase | - |
| FDZ90_RS11265 () | 2301895..2303562 | + | 1668 | WP_000852865.1 | energy-dependent translational throttle protein EttA | - |
| FDZ90_RS11270 () | 2303733..2304104 | + | 372 | WP_000570783.1 | PilZ domain-containing protein | - |
| FDZ90_RS11275 () | 2304171..2305298 | - | 1128 | WP_000257629.1 | T-protein | VF |
| FDZ90_RS11280 () | 2305311..2306384 | - | 1074 | WP_000747937.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| FDZ90_RS11285 () | 2306626..2308302 | + | 1677 | WP_000364257.1 | Sensor histidine kinase BtsS | VF |
| FDZ90_RS11290 () | 2308312..2309025 | + | 714 | WP_000947378.1 | Transcriptional regulatory protein BtsR | VF |
| FDZ90_RS11295 () | 2309052..2310044 | - | 993 | WP_000529115.1 | beta-N-acetylhexosaminidase | - |
| FDZ90_RS11300 () | 2310150..2311262 | + | 1113 | WP_000840717.1 | anhydro-N-acetylmuramic acid kinase | - |
| FDZ90_RS11305 () | 2311280..2312203 | + | 924 | WP_000180252.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| FDZ90_RS11310 () | 2312227..2314023 | - | 1797 | WP_000544193.1 | sodium:proton antiporter | - |
| FDZ90_RS11315 () | 2314042..2314383 | - | 342 | WP_001883835.1 | DUF2799 domain-containing protein | - |
| FDZ90_RS11320 () | 2314636..2316120 | + | 1485 | WP_000964317.1 | carbon starvation protein A | - |
| FDZ90_RS11325 () | 2316257..2317219 | - | 963 | WP_001883831.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| FDZ90_RS11330 () | 2317254..2317688 | - | 435 | WP_001068088.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| FDZ90_RS11335 () | 2317851..2318366 | - | 516 | WP_000071968.1 | Lipoprotein signal peptidase | VF |
| FDZ90_RS11340 () | 2318382..2321231 | - | 2850 | WP_000006088.1 | isoleucine--tRNA ligase | - |
| FDZ90_RS11345 () | 2321262..2322230 | - | 969 | WP_000420406.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| FDZ90_RS11350 () | 2322299..2323861 | - | 1563 | WP_001911253.1 | murein biosynthesis integral membrane protein MurJ | - |
| FDZ90_RS11355 () | 2324119..2324379 | + | 261 | WP_000002742.1 | 30S ribosomal protein S20 | - |
| FDZ90_RS11360 () | 2324448..2324750 | - | 303 | WP_001053149.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| FDZ90_RS11365 () | 2324973..2325863 | - | 891 | WP_000018876.1 | Transcriptional activator protein NhaR | VF |
| FDZ90_RS11370 () | 2326258..2327406 | + | 1149 | WP_000609761.1 | Na/Pi cotransporter family protein | - |
| FDZ90_RS11375 () | 2327499..2328350 | - | 852 | WP_001250353.1 | thymidylate synthase | - |
| FDZ90_RS11380 () | 2328360..2329175 | - | 816 | WP_001135560.1 | prolipoprotein diacylglyceryl transferase | - |
| FDZ90_RS11385 () | 2329204..2329998 | - | 795 | WP_001019422.1 | sulfite exporter TauE/SafE family protein | - |
| FDZ90_RS11390 () | 2330008..2332254 | - | 2247 | WP_000952226.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| FDZ90_RS11395 () | 2332257..2332775 | - | 519 | WP_001911254.1 | RNA pyrophosphohydrolase | - |
| FDZ90_RS11400 () | 2333406..2334071 | + | 666 | WP_000801223.1 | DNA mismatch repair endonuclease MutH | - |
| FDZ90_RS11405 () | 2334288..2335322 | + | 1035 | WP_001200442.1 | NADP(H)-dependent aldo-keto reductase | - |
| FDZ90_RS11410 () | 2335360..2335611 | - | 252 | WP_001249919.1 | hypothetical protein | - |
| FDZ90_RS11415 () | 2336189..2337523 | - | 1335 | WP_000107102.1 | Transcriptional regulatory protein ZraR | VF |
| FDZ90_RS11420 () | 2337797..2339329 | - | 1533 | WP_000128764.1 | lysine--tRNA ligase | - |
| FDZ90_RS11430 () | 2340628..2341941 | - | 1314 | WP_000815019.1 | branched-chain amino acid transport system II carrier protein | - |
| FDZ90_RS11435 () | 2342250..2342972 | + | 723 | WP_000856169.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| FDZ90_RS11440 () | 2343060..2344331 | + | 1272 | WP_000597951.1 | ATP-dependent RNA helicase SrmB | - |
| FDZ90_RS11445 () | 2344453..2346042 | - | 1590 | WP_000013192.1 | peptide chain release factor 3 | - |
| FDZ90_RS11450 () | 2346299..2346946 | - | 648 | WP_000854920.1 | LexA family transcriptional regulator | - |
| FDZ90_RS11455 () | 2347064..2347315 | + | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| FDZ90_RS11460 () | 2347371..2348240 | + | 870 | WP_001205851.1 | hypothetical protein | - |
| FDZ90_RS11465 () | 2348281..2348889 | + | 609 | WP_001918295.1 | hypothetical protein | - |
| FDZ90_RS11470 () | 2348876..2349424 | + | 549 | WP_000848909.1 | lytic transglycosylase domain-containing protein | - |
| FDZ90_RS11475 () | 2349421..2349720 | + | 300 | WP_000210563.1 | flagellar transcriptional regulator FlhD | - |
| FDZ90_RS11480 () | 2349717..2350250 | + | 534 | WP_000566752.1 | hypothetical protein | - |
| FDZ90_RS11485 () | 2350305..2350736 | + | 432 | WP_001883790.1 | hypothetical protein | - |
| FDZ90_RS11490 () | 2350769..2354338 | - | 3570 | WP_000263682.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| FDZ90_RS11495 () | 2354342..2355730 | - | 1389 | WP_000755290.1 | conjugal transfer protein TraH | - |
| FDZ90_RS11500 () | 2355733..2356677 | - | 945 | WP_001260106.1 | thioredoxin family protein | - |
| FDZ90_RS11505 () | 2357412..2361218 | + | 3807 | WP_000838535.1 | response regulator | - |
| FDZ90_RS11510 () | 2361224..2362153 | + | 930 | WP_001271628.1 | Response regulator PleD | VF |
| FDZ90_RS11515 () | 2362416..2363123 | - | 708 | WP_000989527.1 | hypothetical protein | - |
| FDZ90_RS11520 () | 2363214..2364287 | - | 1074 | WP_001207588.1 | toprim domain-containing protein | - |
| FDZ90_RS11525 () | 2364379..2364720 | - | 342 | WP_001014427.1 | hypothetical protein | - |
| FDZ90_RS11530 () | 2364720..2365217 | - | 498 | WP_000791199.1 | DNA repair protein RadC | - |
| FDZ90_RS11535 () | 2365299..2366954 | - | 1656 | WP_001016321.1 | VWA domain-containing protein | - |
| FDZ90_RS11540 () | 2367024..2367464 | - | 441 | WP_001192020.1 | hypothetical protein | - |
| FDZ90_RS11545 () | 2367526..2368479 | - | 954 | WP_000027442.1 | DUF3150 domain-containing protein | - |
| FDZ90_RS11550 () | 2368578..2369345 | - | 768 | WP_000970192.1 | hypothetical protein | - |
| FDZ90_RS11555 () | 2369345..2370304 | - | 960 | WP_000139693.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| FDZ90_RS11560 () | 2370514..2371530 | - | 1017 | WP_000862954.1 | YqaJ viral recombinase family protein | - |
| FDZ90_RS11565 () | 2371591..2371734 | - | 144 | WP_000167275.1 | hypothetical protein | - |
| FDZ90_RS11570 () | 2371816..2372634 | - | 819 | WP_000414661.1 | phage recombination protein Bet | - |
| FDZ90_RS11575 () | 2372714..2373133 | - | 420 | WP_180821250.1 | single-stranded DNA-binding protein | - |
| FDZ90_RS11580 () | 2373149..2373475 | - | 327 | WP_000455721.1 | hypothetical protein | - |
| FDZ90_RS11585 () | 2373843..2374445 | + | 603 | WP_000035786.1 | hypothetical protein | - |
| FDZ90_RS11590 () | 2374586..2375269 | + | 684 | WP_001082329.1 | endonuclease | - |
| FDZ90_RS11595 () | 2375382..2376446 | + | 1065 | WP_000852158.1 | hypothetical protein | - |
| FDZ90_RS11600 () | 2376446..2377531 | + | 1086 | WP_000678781.1 | hypothetical protein | - |
| FDZ90_RS11605 () | 2377538..2378218 | + | 681 | WP_000838013.1 | hypothetical protein | - |
| FDZ90_RS11610 () | 2378311..2382009 | - | 3699 | WP_000805218.1 | conjugal transfer protein TraN | - |
| FDZ90_RS11615 () | 2382012..2383040 | - | 1029 | WP_000735887.1 | TraU family protein | - |
| FDZ90_RS11620 () | 2383024..2384148 | - | 1125 | WP_025989328.1 | pilus assembly protein | - |
| FDZ90_RS11625 () | 2384159..2384671 | - | 513 | WP_001166556.1 | S26 family signal peptidase | - |
| FDZ90_RS11630 () | 2384655..2385002 | - | 348 | WP_001044650.1 | hypothetical protein | - |
| FDZ90_RS11635 () | 2384995..2387394 | - | 2400 | WP_000648041.1 | type IV secretion system protein TraC | - |
| FDZ90_RS11640 () | 2387394..2388086 | - | 693 | WP_001228924.1 | DsbC family protein | - |
| FDZ90_RS11645 () | 2388218..2389156 | - | 939 | WP_000356587.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| FDZ90_RS11650 () | 2389149..2389940 | - | 792 | WP_000095577.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| FDZ90_RS11655 () | 2390161..2390547 | - | 387 | WP_156843795.1 | hypothetical protein | - |
| FDZ90_RS11660 () | 2390544..2391116 | - | 573 | WP_139057167.1 | type IV conjugative transfer system lipoprotein TraV | - |
| FDZ90_RS11665 () | 2391191..2392480 | - | 1290 | WP_001883765.1 | TraB/VirB10 family protein | - |
| FDZ90_RS11670 () | 2392483..2393379 | - | 897 | WP_032467354.1 | type-F conjugative transfer system secretin TraK | - |
| FDZ90_RS11675 () | 2393363..2393989 | - | 627 | WP_000667169.1 | hypothetical protein | - |
| FDZ90_RS11680 () | 2393986..2394267 | - | 282 | WP_000433889.1 | type IV conjugative transfer system protein TraL | - |
| FDZ90_RS11685 () | 2394448..2394771 | + | 324 | WP_000118545.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FDZ90_RS11690 () | 2394768..2395046 | + | 279 | WP_000058216.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| FDZ90_RS11695 () | 2395072..2395707 | - | 636 | WP_000033753.1 | DUF4400 domain-containing protein | - |
| FDZ90_RS11700 () | 2395694..2396254 | - | 561 | WP_000546510.1 | hypothetical protein | - |
| FDZ90_RS11705 () | 2396264..2398084 | - | 1821 | WP_000661887.1 | conjugative transfer system coupling protein TraD | - |
| FDZ90_RS11710 () | 2398133..2400283 | - | 2151 | WP_000475917.1 | TraI domain-containing protein | - |
| FDZ90_RS11715 () | 2400438..2403089 | - | 2652 | WP_000494309.1 | AAA family ATPase | - |
| FDZ90_RS11720 () | 2403133..2405208 | - | 2076 | WP_000627048.1 | protease Lon-related BREX system protein BrxL | - |
| FDZ90_RS11725 () | 2405225..2407882 | - | 2658 | WP_001167232.1 | BREX-1 system phosphatase PglZ type A | - |
| FDZ90_RS11730 () | 2407882..2411454 | - | 3573 | WP_001090323.1 | BREX-1 system adenine-specific DNA-methyltransferase PglX | - |
| FDZ90_RS11735 () | 2411458..2412216 | - | 759 | WP_000605305.1 | hypothetical protein | - |
| FDZ90_RS11740 () | 2412213..2413382 | - | 1170 | WP_000595812.1 | AAA family ATPase | - |
| FDZ90_RS11745 () | 2413393..2417070 | - | 3678 | WP_000687849.1 | BREX system P-loop protein BrxC | - |
| FDZ90_RS11750 () | 2417089..2417673 | - | 585 | WP_000645939.1 | DUF1788 domain-containing protein | - |
| FDZ90_RS11755 () | 2417670..2418269 | - | 600 | WP_001080201.1 | DUF1819 family protein | - |
| FDZ90_RS11760 () | 2418279..2419205 | - | 927 | WP_001883760.1 | WYL domain-containing protein | - |
| FDZ90_RS11765 () | 2419274..2419588 | - | 315 | WP_000284109.1 | hypothetical protein | - |
| FDZ90_RS11770 () | 2419662..2420570 | - | 909 | WP_000196207.1 | DNA polymerase III subunit epsilon | - |
| FDZ90_RS11775 () | 2420953..2421210 | - | 258 | WP_000182836.1 | hypothetical protein | - |
| FDZ90_RS11780 () | 2421209..2421658 | + | 450 | WP_000116661.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| FDZ90_RS11785 () | 2421666..2421899 | + | 234 | Protein_2117 | DNA polymerase V subunit UmuC | - |
| FDZ90_RS11790 () | 2422584..2423891 | - | 1308 | Protein_2118 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| FDZ90_RS11795 () | 2424362..2425176 | + | 815 | Protein_2119 | Dihydropteroate synthase | ARG |
| FDZ90_RS11800 () | 2425237..2426040 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| FDZ90_RS11805 () | 2426040..2426876 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| FDZ90_RS11810 () | 2426983..2427387 | - | 405 | Protein_2122 | IS91 family transposase ISPps1 | Transposase |
| FDZ90_RS11815 () | 2427499..2427804 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| FDZ90_RS11820 () | 2427832..2429046 | - | 1215 | WP_000214116.1 | Inner membrane transport protein YdhC | ARG |
| FDZ90_RS11825 () | 2429263..2430147 | - | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| FDZ90_RS11830 () | 2430178..2430582 | - | 405 | Protein_2126 | IS91 family transposase ISVsa3 | Transposase |
| FDZ90_RS11835 () | 2430872..2431498 | + | 627 | WP_025989256.1 | dCTP deaminase | - |
| FDZ90_RS11840 () | 2431513..2432679 | + | 1167 | WP_000021290.1 | hypothetical protein | - |
| FDZ90_RS11845 () | 2432679..2433224 | + | 546 | WP_000356960.1 | hypothetical protein | - |
| FDZ90_RS11850 () | 2433238..2433792 | + | 555 | WP_001031075.1 | Dihydrofolate reductase | ARG |
| FDZ90_RS11855 () | 2433901..2434122 | - | 222 | WP_079993690.1 | hypothetical protein | - |
| FDZ90_RS11860 () | 2434153..2435646 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| FDZ90_RS11865 () | 2436064..2439042 | - | 2979 | WP_000985631.1 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| FDZ90_RS11870 () | 2439180..2439758 | - | 579 | Protein_2134 | Tn3 family transposase TnpA_IS3000 | Transposase |
| FDZ90_RS11875 () | 2440168..2441205 | + | 1038 | Protein_2135 | translesion error-prone DNA polymerase V subunit UmuC | - |
| FDZ90_RS11880 () | 2441216..2441659 | - | 444 | WP_000348526.1 | hypothetical protein | - |
| FDZ90_RS11885 () | 2442124..2443098 | + | 975 | WP_000497805.1 | ParM/StbA family protein | - |
| FDZ90_RS11890 () | 2443101..2443370 | + | 270 | WP_001267005.1 | hypothetical protein | - |
| FDZ90_RS11895 () | 2443372..2444613 | + | 1242 | WP_001218617.1 | Prophage integrase IntS ; Integrase | Integrase |
| FDZ90_RS11900 () | 2444630..2444824 | - | 195 | WP_000127614.1 | DNA-binding protein | - |
| FDZ90_RS11905 () | 2445708..2447765 | + | 2058 | WP_000160066.1 | putative signaling protein | VF |
| FDZ90_RS11910 () | 2447754..2448203 | - | 450 | WP_000214238.1 | Ribosomal-protein-alanine acetyltransferase | VF |
| FDZ90_RS11915 () | 2448200..2448607 | - | 408 | WP_000953212.1 | DNA polymerase III subunit psi | - |
| FDZ90_RS11920 () | 2448718..2449221 | - | 504 | WP_000908540.1 | N-acetyltransferase | - |
| FDZ90_RS11925 () | 2449205..2449732 | - | 528 | WP_000932672.1 | SCP2 domain-containing protein | - |
| FDZ90_RS11930 () | 2449965..2452019 | + | 2055 | WP_001111411.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| FDZ90_RS11935 () | 2452127..2453140 | + | 1014 | WP_000421327.1 | U32 family peptidase | - |
| FDZ90_RS11940 () | 2453152..2454030 | + | 879 | WP_000872504.1 | U32 family peptidase | - |
| FDZ90_RS11945 () | 2454083..2455421 | - | 1339 | Protein_2149 | sodium-coupled multidrug efflux MATE transporter VcrM | - |
| FDZ90_RS11950 () | 2455468..2455875 | - | 408 | WP_000887847.1 | MarR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|