MGE detailed information
MGE type: Conjugative plasmid MGE length: 81815 bp
Accession: NZ_CP039501 Location: 1..81815 Organism: Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 Replicon: plasmid pCFSAN000189
Accession: NZ_CP039501 Location: 1..81815 Organism: Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 Replicon: plasmid pCFSAN000189
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SEEB0189_RS00010 (SEEB0189_00010) | 437..1168 | + | 732 | WP_020833545.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| SEEB0189_RS00015 | 1393..1596 | + | 204 | Protein_2 | phospholipase D family protein | - |
| SEEB0189_RS00020 | 1635..1913 | + | 279 | WP_015633302.1 | Phospholipase D | VF |
| SEEB0189_RS00025 (SEEB0189_00020) | 2022..2288 | + | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
| SEEB0189_RS00030 (SEEB0189_00025) | 2538..2615 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| SEEB0189_RS00035 (SEEB0189_00030) | 2596..3477 | + | 882 | WP_023193063.1 | incFII family plasmid replication initiator RepA | - |
| SEEB0189_RS00040 (SEEB0189_00040) | 4433..4702 | + | 270 | WP_000084547.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| SEEB0189_RS00045 (SEEB0189_00045) | 4702..4980 | + | 279 | WP_252990106.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| SEEB0189_RS00050 | 4970..5113 | - | 144 | Protein_9 | IS110 family transposase | - |
| SEEB0189_RS00055 (SEEB0189_00050) | 5132..5722 | - | 591 | WP_031607984.1 | plasmid pRiA4b ORF-3 family protein | - |
| SEEB0189_RS00060 (SEEB0189_00055) | 6968..7477 | + | 510 | WP_131535394.1 | hypothetical protein | - |
| SEEB0189_RS00065 (SEEB0189_00060) | 7786..8658 | + | 873 | WP_077915507.1 | helix-turn-helix transcriptional regulator | - |
| SEEB0189_RS00070 (SEEB0189_00065) | 8855..9556 | + | 702 | WP_023251326.1 | transcriptional activator SprB | - |
| SEEB0189_RS00075 (SEEB0189_00070) | 9737..10129 | - | 393 | Protein_14 | IS3 family transposase ISYps8 | Transposase |
| SEEB0189_RS00080 (SEEB0189_00075) | 10145..11605 | - | 1461 | WP_000834698.1 | insecticidal delta-endotoxin Cry8Ea1 family protein | - |
| SEEB0189_RS00085 (SEEB0189_00080) | 12087..12572 | - | 486 | Protein_16 | IS66 family transposase ISEcl6 | Transposase |
| SEEB0189_RS00090 | 12662..13477 | - | 816 | WP_023193065.1 | LysR family transcriptional regulator | - |
| SEEB0189_RS00095 | 13485..13790 | - | 306 | WP_023193066.1 | hypothetical protein | - |
| SEEB0189_RS00100 (SEEB0189_00090) | 13778..13942 | - | 165 | Protein_19 | transposase | - |
| SEEB0189_RS00105 (SEEB0189_00095) | 14095..14340 | - | 246 | WP_131535392.1 | hypothetical protein | - |
| SEEB0189_RS00110 | 14468..14608 | + | 141 | Protein_21 | hypothetical protein | - |
| SEEB0189_RS00115 (SEEB0189_00105) | 15559..15706 | + | 148 | Protein_22 | integrase core domain-containing protein | - |
| SEEB0189_RS00120 (SEEB0189_00110) | 15863..18289 | - | 2427 | WP_000471149.1 | F1 capsule-anchoring protein | VF |
| SEEB0189_RS00125 (SEEB0189_00115) | 18309..19016 | - | 708 | WP_020833592.1 | Chaperone protein caf1M | VF |
| SEEB0189_RS00130 (SEEB0189_00120) | 19392..20591 | + | 1200 | WP_020833591.1 | IS256 family transposase ISEc39 | Transposase |
| SEEB0189_RS00135 (SEEB0189_00125) | 20671..21222 | - | 552 | WP_020833590.1 | AidA/PixA family protein | - |
| SEEB0189_RS00140 (SEEB0189_00130) | 21916..24663 | + | 2748 | WP_023193067.1 | inverse autotransporter beta domain-containing protein | - |
| SEEB0189_RS00145 (SEEB0189_00135) | 24675..25727 | + | 1053 | WP_020833588.1 | Ig-like domain-containing protein | - |
| SEEB0189_RS00150 (SEEB0189_00140) | 25926..26648 | + | 723 | WP_000742239.1 | LuxR family transcriptional regulator | - |
| SEEB0189_RS00155 (SEEB0189_00145) | 27391..27807 | + | 417 | WP_001672640.1 | lysozyme inhibitor LprI family protein | - |
| SEEB0189_RS00160 (SEEB0189_00150) | 28627..28845 | + | 219 | WP_000813642.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| SEEB0189_RS00165 (SEEB0189_00155) | 28847..29152 | + | 306 | WP_020833585.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| SEEB0189_RS00170 | 29210..29423 | + | 214 | Protein_33 | hypothetical protein | - |
| SEEB0189_RS00175 (SEEB0189_00160) | 29461..30243 | + | 783 | WP_020833584.1 | site-specific integrase | - |
| SEEB0189_RS00180 (SEEB0189_00165) | 30394..31335 | - | 942 | WP_000728920.1 | Recombination-promoting nuclease RpnA | VF |
| SEEB0189_RS00185 (SEEB0189_00170) | 31966..32220 | + | 255 | WP_001749329.1 | hypothetical protein | - |
| SEEB0189_RS23195 | 32508..32606 | + | 99 | WP_020833583.1 | DinQ-like type I toxin DqlB | - |
| SEEB0189_RS00190 (SEEB0189_00175) | 32909..34114 | + | 1206 | WP_000427674.1 | AAA family ATPase | - |
| SEEB0189_RS00195 (SEEB0189_00180) | 34114..35088 | + | 975 | WP_020833582.1 | ParB family protein | - |
| SEEB0189_RS00200 (SEEB0189_00185) | 35170..36444 | - | 1275 | WP_020833581.1 | Y-family DNA polymerase | - |
| SEEB0189_RS00205 (SEEB0189_00190) | 36444..36867 | - | 424 | Protein_41 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| SEEB0189_RS00210 (SEEB0189_00195) | 37047..37718 | - | 672 | WP_020833580.1 | SOS response-associated peptidase family protein | - |
| SEEB0189_RS00215 (SEEB0189_00200) | 38078..38755 | + | 678 | WP_020833579.1 | DNA methylase | - |
| SEEB0189_RS00220 (SEEB0189_00205) | 38755..38976 | + | 222 | WP_020833578.1 | hypothetical protein | - |
| SEEB0189_RS00225 (SEEB0189_00210) | 38987..39406 | + | 420 | WP_020833577.1 | DUF1380 family protein | - |
| SEEB0189_RS00230 (SEEB0189_00215) | 39461..40240 | + | 780 | WP_020833576.1 | hypothetical protein | - |
| SEEB0189_RS00235 (SEEB0189_00220) | 40646..41152 | + | 507 | WP_020833575.1 | antirestriction protein ArdA | - |
| SEEB0189_RS00240 (SEEB0189_00225) | 41195..41386 | + | 192 | WP_020833574.1 | hypothetical protein | - |
| SEEB0189_RS00245 (SEEB0189_00230) | 41579..41832 | + | 254 | Protein_49 | DNA polymerase III subunit theta | - |
| SEEB0189_RS00250 (SEEB0189_00235) | 41867..42183 | + | 317 | Protein_50 | hypothetical protein | - |
| SEEB0189_RS00255 | 42324..42545 | - | 222 | WP_114053208.1 | hypothetical protein | - |
| SEEB0189_RS00260 (SEEB0189_00245) | 42876..43430 | + | 555 | WP_020833571.1 | single-stranded DNA-binding protein | - |
| SEEB0189_RS00265 (SEEB0189_00250) | 43483..43725 | + | 243 | WP_024143550.1 | DUF905 domain-containing protein | - |
| SEEB0189_RS00270 (SEEB0189_00255) | 43796..45829 | + | 2034 | WP_020833569.1 | ParB/RepB/Spo0J family partition protein | - |
| SEEB0189_RS00275 (SEEB0189_00260) | 45870..46304 | + | 435 | WP_015059789.1 | conjugation system SOS inhibitor PsiB | - |
| SEEB0189_RS00280 (SEEB0189_00265) | 46301..47029 | + | 729 | WP_020833568.1 | plasmid SOS inhibition protein A | - |
| SEEB0189_RS00285 (SEEB0189_00270) | 47026..47379 | + | 354 | WP_020833567.1 | hypothetical protein | - |
| SEEB0189_RS00290 (SEEB0189_00275) | 47734..48108 | + | 375 | WP_020833566.1 | hypothetical protein | - |
| SEEB0189_RS00295 (SEEB0189_00280) | 48834..49238 | + | 405 | WP_020833565.1 | hypothetical protein | - |
| SEEB0189_RS00300 (SEEB0189_00285) | 49295..49642 | + | 348 | WP_000550116.1 | hypothetical protein | - |
| SEEB0189_RS00305 (SEEB0189_00290) | 49737..49883 | + | 147 | WP_001159046.1 | hypothetical protein | - |
| SEEB0189_RS00310 (SEEB0189_00295) | 49930..50754 | + | 825 | WP_020833564.1 | N-6 DNA methylase | - |
| SEEB0189_RS00315 (SEEB0189_00300) | 51345..51931 | + | 587 | Protein_63 | antirestriction protein | - |
| SEEB0189_RS00320 (SEEB0189_00305) | 51942..52397 | - | 456 | WP_020833563.1 | hypothetical protein | VF |
| SEEB0189_RS00325 (SEEB0189_00310) | 52866..53246 | + | 381 | WP_020833562.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| SEEB0189_RS00330 (SEEB0189_00315) | 53543..53992 | + | 450 | WP_020833561.1 | helix-turn-helix domain-containing protein | - |
| SEEB0189_RS00335 (SEEB0189_00320) | 54198..54431 | + | 234 | WP_000662610.1 | TraY domain-containing protein | - |
| SEEB0189_RS00340 (SEEB0189_00325) | 54548..54907 | + | 360 | WP_001054221.1 | type IV conjugative transfer system pilin TraA | - |
| SEEB0189_RS00345 (SEEB0189_00330) | 54909..55214 | + | 306 | WP_000398849.1 | type IV conjugative transfer system protein TraL | - |
| SEEB0189_RS00350 (SEEB0189_00335) | 55234..55797 | + | 564 | WP_001535119.1 | type IV conjugative transfer system protein TraE | - |
| SEEB0189_RS00355 (SEEB0189_00340) | 55787..56527 | + | 741 | WP_020833560.1 | type-F conjugative transfer system secretin TraK | - |
| SEEB0189_RS00360 (SEEB0189_00345) | 56514..57875 | + | 1362 | WP_000024509.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| SEEB0189_RS00365 (SEEB0189_00350) | 57986..58210 | + | 225 | WP_008455352.1 | TraR/DksA C4-type zinc finger protein | - |
| SEEB0189_RS00370 (SEEB0189_00355) | 58214..58666 | + | 453 | WP_020833558.1 | hypothetical protein | - |
| SEEB0189_RS00375 (SEEB0189_00360) | 58684..59298 | + | 615 | WP_020833557.1 | type IV conjugative transfer system lipoprotein TraV | - |
| SEEB0189_RS00380 (SEEB0189_00365) | 59309..61900 | + | 2592 | WP_001808381.1 | type IV secretion system protein TraC | - |
| SEEB0189_RS00385 (SEEB0189_00370) | 61897..62361 | + | 465 | WP_024143549.1 | type-F conjugative transfer system protein TrbI | - |
| SEEB0189_RS00390 (SEEB0189_00375) | 62361..62996 | + | 636 | WP_000715590.1 | type-F conjugative transfer system protein TraW | - |
| SEEB0189_RS00395 (SEEB0189_00380) | 62993..63988 | + | 996 | WP_004558357.1 | conjugal transfer pilus assembly protein TraU | - |
| SEEB0189_RS00400 (SEEB0189_00385) | 63999..64367 | + | 369 | WP_020833555.1 | hypothetical protein | - |
| SEEB0189_RS00405 (SEEB0189_00390) | 64364..64978 | + | 615 | WP_020833554.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| SEEB0189_RS00410 (SEEB0189_00395) | 64975..66828 | + | 1854 | WP_020833553.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| SEEB0189_RS00415 (SEEB0189_00400) | 66825..67604 | + | 780 | WP_004558353.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| SEEB0189_RS00420 (SEEB0189_00405) | 67626..68237 | + | 612 | WP_020833552.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| SEEB0189_RS00425 (SEEB0189_00410) | 68237..69598 | + | 1362 | WP_020833551.1 | conjugal transfer pilus assembly protein TraH | - |
| SEEB0189_RS00430 (SEEB0189_00415) | 69600..72497 | + | 2898 | WP_020833550.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| SEEB0189_RS00435 (SEEB0189_00420) | 72509..73069 | + | 561 | WP_020833549.1 | hypothetical protein | - |
| SEEB0189_RS00440 (SEEB0189_00425) | 73245..73982 | + | 738 | WP_020833548.1 | conjugal transfer complement resistance protein TraT | - |
| SEEB0189_RS00445 (SEEB0189_00430) | 74133..76367 | + | 2235 | WP_020833547.1 | type IV conjugative transfer system coupling protein TraD | - |
| SEEB0189_RS00450 (SEEB0189_00435) | 76367..81670 | + | 5304 | WP_020833546.1 | Multifunctional conjugation protein TraI | Relaxase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|