MGE detailed information
MGE type: Genomic_island MGE length: 10397 bp
Accession: NZ_CP039298 Location: 2470510..2480906 Organism: Escherichia coli strain PigCaeca_1 Replicon: chromosome
Accession: NZ_CP039298 Location: 2470510..2480906 Organism: Escherichia coli strain PigCaeca_1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E7Z58_RS12300 () | 2465939..2467240 | + | 1302 | WP_000961959.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
| E7Z58_RS12305 () | 2467356..2467694 | + | 339 | WP_000883400.1 | divalent cation tolerance protein CutA | - |
| E7Z58_RS12310 () | 2467670..2469367 | + | 1698 | WP_000068922.1 | protein-disulfide reductase DsbD | - |
| E7Z58_RS12315 () | 2469404..2469979 | + | 576 | WP_001188520.1 | transcriptional regulator | - |
| E7Z58_RS12325 () | 2470510..2471207 | - | 698 | Protein_2376 | IS1 family transposase IS1R | Transposase |
| E7Z58_RS12330 () | 2471555..2473093 | + | 1539 | WP_001187177.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| E7Z58_RS12340 () | 2473459..2474793 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| E7Z58_RS12345 () | 2474873..2477020 | + | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| E7Z58_RS12350 () | 2477079..2478536 | + | 1458 | WP_094304342.1 | dipeptide/tripeptide permease DtpC | - |
| E7Z58_RS12355 () | 2478773..2480290 | + | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| E7Z58_RS12360 () | 2480409..2480582 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| E7Z58_RS12365 () | 2480610..2480906 | - | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| E7Z58_RS12370 () | 2481133..2481405 | - | 273 | WP_000405651.1 | N-acetyltransferase | - |
| E7Z58_RS12375 () | 2481417..2481647 | - | 231 | WP_000371704.1 | (4Fe-4S)-binding protein | - |
| E7Z58_RS12380 () | 2481828..2483459 | + | 1632 | WP_001216477.1 | sensor histidine kinase | - |
| E7Z58_RS12385 () | 2483456..2484175 | + | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20087 | HG738867 | 4238430..4247780 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21458 | NC_007779 | 4357262..4366612 | 0.006 | |
| Escherichia coli BW2952 | Genomic island | TA23874 | NC_012759 | 4289342..4298692 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285032 | NZ_HG738867 | 4238430..4247780 | 0.006 |