123792

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 2480409..2480906 Replicon chromosome
Accession NZ_CP039298
Organism Escherichia coli strain PigCaeca_1

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag E7Z58_RS12360 Protein ID WP_001173343.1
Coordinates 2480409..2480582 (-) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID L4JK92
Locus tag E7Z58_RS12365 Protein ID WP_000398619.1
Coordinates 2480610..2480906 (-) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E7Z58_RS12350 2477079..2478536 + 1458 WP_094304342.1 dipeptide/tripeptide permease DtpC -
E7Z58_RS12355 2478773..2480290 + 1518 WP_001295074.1 lysine--tRNA ligase -
E7Z58_RS12360 2480409..2480582 - 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
E7Z58_RS12365 2480610..2480906 - 297 WP_000398619.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
E7Z58_RS12370 2481133..2481405 - 273 WP_000405651.1 N-acetyltransferase -
E7Z58_RS12375 2481417..2481647 - 231 WP_000371704.1 (4Fe-4S)-binding protein -
E7Z58_RS12380 2481828..2483459 + 1632 WP_001216477.1 sensor histidine kinase -
E7Z58_RS12385 2483456..2484175 + 720 WP_000611288.1 two-component system response regulator DcuR -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - - 2470510..2480906 10396


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T123792 WP_001173343.1 NZ_CP039298:c2480582-2480409 [Escherichia coli]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

>T123792 NZ_CP039298:c2480582-2480409 [Escherichia coli]
ATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATCCTTTGTCATTATCTGGTTTATCTCACA
TGAGAAAACACATATTCGTTTACTTAGTGCATTCCTGGTCGGAATAACCTGGCCAATGAGTCTGCCTGTGGCATTACTTT
TTTCTCTCTTTTAG

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11467.97 Da        Isoelectric Point: 4.1705

>AT123792 WP_000398619.1 NZ_CP039298:c2480906-2480610 [Escherichia coli]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Download         Length: 297 bp

>AT123792 NZ_CP039298:c2480906-2480610 [Escherichia coli]
ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCTCAGTGTTCTTAAGATT
AAGATCATTGATGTATGATATGAATTTCTCCTCTATCGTGGCTGATGAATATGGGATACCACGACAATTGAATGAAAACT
CCTTCGCAATAACGACATCGTTAGCCGCAAGTGAAATCGAAGATTTAATCAGGCTCAAATGCTTAGACTTACCGGATATT
GATTTTGACCTCAACATTATGACAGTTGATGACTATTTCCGTCAGTTTTACAAGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBH6

References