MGE detailed information
MGE type: Prophage MGE length: 58233 bp
Accession: NZ_CP039156 Location: 1561745..1619977 Organism: Staphylococcus aureus strain WCUH29 Replicon: chromosome
Accession: NZ_CP039156 Location: 1561745..1619977 Organism: Staphylococcus aureus strain WCUH29 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5491_RS07740 () | 1557068..1557316 | + | 249 | WP_001151997.1 | ferredoxin | - |
| E5491_RS07745 () | 1557422..1557967 | - | 546 | WP_001186912.1 | ECF transporter S component | - |
| E5491_RS07750 () | 1558369..1559325 | - | 957 | WP_000913227.1 | DUF1672 domain-containing protein | - |
| E5491_RS07755 () | 1559466..1559720 | - | 255 | WP_001557351.1 | hypothetical protein | - |
| E5491_RS07760 () | 1559796..1560692 | - | 897 | WP_000476354.1 | DUF1672 domain-containing protein | - |
| E5491_RS07765 () | 1560750..1561655 | - | 906 | WP_000476865.1 | DUF1672 domain-containing protein | - |
| E5491_RS15280 () | 1561745..1561960 | - | 216 | WP_174720161.1 | hypothetical protein | - |
| E5491_RS07775 () | 1562337..1563173 | - | 837 | WP_000675478.1 | hypothetical protein | - |
| E5491_RS07785 () | 1563789..1565243 | - | 1455 | WP_000909210.1 | N-acetylmuramoyl-L-alanine amidase | - |
| E5491_RS07790 () | 1565254..1565556 | - | 303 | WP_000339144.1 | phage holin | - |
| E5491_RS07795 () | 1565692..1565991 | - | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| E5491_RS07800 () | 1566037..1566201 | - | 165 | WP_000916020.1 | XkdX family protein | - |
| E5491_RS07805 () | 1566194..1566583 | - | 390 | WP_001166599.1 | DUF2977 domain-containing protein | - |
| E5491_RS07810 () | 1566583..1568049 | - | 1467 | WP_000067148.1 | BppU family phage baseplate upper protein | - |
| E5491_RS07815 () | 1568049..1569959 | - | 1911 | WP_000429551.1 | minor structural protein | - |
| E5491_RS07820 () | 1569975..1570265 | - | 291 | WP_000179862.1 | hypothetical protein | - |
| E5491_RS07825 () | 1570265..1571848 | - | 1584 | WP_000384461.1 | prophage endopeptidase tail family protein | - |
| E5491_RS07830 () | 1571857..1572681 | - | 825 | WP_001190533.1 | phage tail family protein | - |
| E5491_RS07835 () | 1572681..1578881 | - | 6201 | WP_001003443.1 | phage tail tape measure protein | - |
| E5491_RS07840 () | 1578895..1579053 | - | 159 | WP_000438833.1 | hypothetical protein | - |
| E5491_RS07845 () | 1579095..1579445 | - | 351 | WP_000589167.1 | hypothetical protein | - |
| E5491_RS07850 () | 1579503..1579958 | - | 456 | WP_000169128.1 | Ig domain-containing protein | - |
| E5491_RS07855 () | 1580050..1580691 | - | 642 | WP_000807536.1 | tail protein | - |
| E5491_RS07860 () | 1580726..1581121 | - | 396 | WP_001023806.1 | DUF3168 domain-containing protein | - |
| E5491_RS07865 () | 1581122..1581523 | - | 402 | WP_000110023.1 | hypothetical protein | - |
| E5491_RS07870 () | 1581520..1581852 | - | 333 | WP_000395498.1 | hypothetical protein | - |
| E5491_RS07875 () | 1581864..1582142 | - | 279 | WP_000050973.1 | head-tail connector protein | - |
| E5491_RS07880 () | 1582211..1583374 | - | 1164 | WP_001142734.1 | phage major capsid protein | - |
| E5491_RS07885 () | 1583386..1584159 | - | 774 | WP_000061866.1 | Clp protease ClpP | - |
| E5491_RS07890 () | 1584143..1585381 | - | 1239 | WP_001100665.1 | phage portal protein | - |
| E5491_RS07895 () | 1585386..1587077 | - | 1692 | WP_000153544.1 | terminase large subunit | - |
| E5491_RS07900 () | 1587067..1587372 | - | 306 | WP_000778933.1 | P27 family phage terminase small subunit | - |
| E5491_RS07905 () | 1587494..1587808 | - | 315 | WP_000160683.1 | HNH endonuclease | - |
| E5491_RS07910 () | 1587965..1588402 | - | 438 | WP_000513703.1 | transcriptional regulator | - |
| E5491_RS07915 () | 1588415..1589791 | - | 1377 | WP_078065111.1 | DEAD/DEAH box helicase | - |
| E5491_RS07920 () | 1589772..1590062 | - | 291 | WP_000665203.1 | VRR-NUC domain-containing protein | - |
| E5491_RS07925 () | 1590196..1590300 | + | 105 | WP_011447017.1 | hypothetical protein | - |
| E5491_RS07930 () | 1590403..1592850 | - | 2448 | WP_000884857.1 | virulence-associated E family protein | - |
| E5491_RS07935 () | 1592902..1593102 | - | 201 | WP_000265258.1 | DUF1514 family protein | - |
| E5491_RS07940 () | 1593170..1593322 | - | 153 | WP_000237866.1 | transcriptional activator RinB | - |
| E5491_RS07945 () | 1593325..1593525 | - | 201 | WP_001125015.1 | hypothetical protein | - |
| E5491_RS07950 () | 1593500..1593688 | - | 189 | WP_000195837.1 | DUF1381 domain-containing protein | - |
| E5491_RS07955 () | 1593725..1594267 | - | 543 | WP_000185654.1 | dUTP pyrophosphatase | - |
| E5491_RS07960 () | 1594272..1594508 | - | 237 | WP_001065023.1 | DUF1024 family protein | - |
| E5491_RS07965 () | 1594501..1594809 | - | 309 | WP_000144708.1 | hypothetical protein | - |
| E5491_RS07970 () | 1594806..1595153 | - | 348 | WP_000979209.1 | hypothetical protein | - |
| E5491_RS07975 () | 1595150..1595551 | - | 402 | WP_000695759.1 | hypothetical protein | - |
| E5491_RS07980 () | 1595554..1595760 | - | 207 | WP_000693987.1 | hypothetical protein | - |
| E5491_RS07985 () | 1595774..1596022 | - | 249 | WP_015968801.1 | phi PVL orf 51-like protein | - |
| E5491_RS07990 () | 1596031..1596231 | - | 201 | WP_000235381.1 | hypothetical protein | - |
| E5491_RS07995 () | 1596234..1596491 | - | 258 | WP_000111488.1 | DUF3310 domain-containing protein | - |
| E5491_RS08000 () | 1596491..1596892 | - | 402 | WP_000113981.1 | PVL family protein | - |
| E5491_RS08005 () | 1596892..1597077 | - | 186 | WP_001164629.1 | DUF3113 family protein | - |
| E5491_RS08010 () | 1597090..1599042 | - | 1953 | WP_001796208.1 | DNA polymerase | - |
| E5491_RS08015 () | 1599111..1599668 | - | 558 | WP_000645042.1 | DUF2815 family protein | - |
| E5491_RS08020 () | 1599694..1600860 | - | 1167 | WP_047216521.1 | DUF2800 domain-containing protein | - |
| E5491_RS08025 () | 1600857..1601219 | - | 363 | WP_135783508.1 | hypothetical protein | - |
| E5491_RS08030 () | 1601234..1601557 | - | 324 | WP_000174994.1 | hypothetical protein | - |
| E5491_RS08035 () | 1601636..1601797 | - | 162 | WP_001285963.1 | DUF1270 family protein | - |
| E5491_RS08040 () | 1601810..1602073 | - | 264 | WP_001124190.1 | helix-turn-helix domain-containing protein | - |
| E5491_RS08045 () | 1602098..1602313 | - | 216 | WP_001036302.1 | hypothetical protein | - |
| E5491_RS08050 () | 1602368..1602733 | + | 366 | WP_001128433.1 | hypothetical protein | Antitoxin Detail |
| E5491_RS08055 () | 1602702..1602947 | - | 246 | WP_001025401.1 | DUF2829 domain-containing protein | Toxin Detail |
| E5491_RS08060 () | 1602963..1603211 | - | 249 | WP_000272861.1 | helix-turn-helix domain-containing protein | - |
| E5491_RS08065 () | 1603375..1603698 | + | 324 | WP_001260486.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| E5491_RS08070 () | 1603711..1604172 | + | 462 | WP_000525014.1 | hypothetical protein | Toxin Detail |
| E5491_RS08075 () | 1604189..1604623 | + | 435 | WP_047216523.1 | hypothetical protein | - |
| E5491_RS08080 () | 1604652..1605047 | + | 396 | WP_000449655.1 | hypothetical protein | - |
| E5491_RS08085 () | 1605137..1605283 | + | 147 | WP_001795334.1 | hypothetical protein | - |
| E5491_RS08090 () | 1605280..1605894 | - | 615 | WP_000191463.1 | hypothetical protein | - |
| E5491_RS08095 () | 1606020..1607225 | + | 1206 | WP_000264751.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| E5491_RS08100 () | 1607268..1609295 | - | 2028 | WP_001813515.1 | hypothetical protein | - |
| E5491_RS08105 () | 1609288..1610214 | - | 927 | WP_001557355.1 | DUF1672 domain-containing protein | - |
| E5491_RS08110 () | 1610458..1612209 | - | 1752 | WP_000987774.1 | two-component system sensor histidine kinase SrrB | - |
| E5491_RS08115 () | 1612190..1612915 | - | 726 | WP_000064078.1 | Regulator of RpoS | VF |
| E5491_RS08120 () | 1613048..1613785 | - | 738 | WP_000159577.1 | rRNA pseudouridine synthase | - |
| E5491_RS08125 () | 1613778..1614320 | - | 543 | WP_000368656.1 | SMC-Scp complex subunit ScpB | - |
| E5491_RS08130 () | 1614313..1615044 | - | 732 | WP_000273371.1 | segregation/condensation protein A | - |
| E5491_RS08135 () | 1615136..1615642 | + | 507 | WP_001183429.1 | DUF309 domain-containing protein | - |
| E5491_RS08140 () | 1615720..1616607 | - | 888 | WP_000447733.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| E5491_RS08145 () | 1616656..1617105 | - | 450 | WP_000392691.1 | transcriptional repressor | - |
| E5491_RS08150 () | 1617210..1617752 | - | 543 | WP_000365240.1 | NUDIX hydrolase | - |
| E5491_RS08155 () | 1617834..1618742 | + | 909 | WP_001171336.1 | aldo/keto reductase | - |
| E5491_RS08160 () | 1618958..1619206 | - | 249 | WP_000995800.1 | hypothetical protein | - |
| E5491_RS08165 () | 1619222..1619977 | - | 756 | WP_000678232.1 | SDR family oxidoreductase | - |
| E5491_RS08170 () | 1620119..1620934 | + | 816 | WP_000779749.1 | pyrroline-5-carboxylate reductase | - |
| E5491_RS08175 () | 1621037..1621957 | - | 921 | WP_000454063.1 | ribonuclease Z | - |
| E5491_RS08180 () | 1622270..1623754 | + | 1485 | WP_000105070.1 | glucose-6-phosphate dehydrogenase | - |
| E5491_RS08185 () | 1623984..1624850 | + | 867 | WP_000382585.1 | AraC family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Staphylococcus aureus subsp. aureus NCTC 8325 | Prophage | TA21483 | NC_007795 | 1462371..1521253 | 0.006 |