MGE detailed information
MGE type: Conjugative plasmid MGE length: 131158 bp
Accession: NZ_CP038858 Location: 1..131158 Organism: Escherichia coli strain PigCaeca_2 Replicon: plasmid unnamed
Accession: NZ_CP038858 Location: 1..131158 Organism: Escherichia coli strain PigCaeca_2 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5285_RS23595 () | 1206..1475 | + | 270 | WP_015060495.1 | YacA plasmid stabilization protein | - |
| E5285_RS23600 () | 1472..1753 | + | 282 | Protein_2 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| E5285_RS23605 () | 1845..2367 | - | 523 | Protein_3 | IS1 family transposase | - |
| E5285_RS23610 () | 2894..3343 | + | 450 | WP_000649995.1 | hypothetical protein | - |
| E5285_RS23615 () | 3459..4156 | - | 698 | Protein_5 | IS1 family transposase IS1G | Transposase |
| E5285_RS23620 () | 4411..4680 | + | 270 | WP_001275013.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| E5285_RS23625 () | 4684..5214 | + | 531 | WP_000348883.1 | GNAT family N-acetyltransferase | Toxin Detail |
| E5285_RS23630 () | 5215..5432 | + | 218 | Protein_8 | transposase | - |
| E5285_RS23635 () | 5437..5712 | - | 276 | WP_001403920.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| E5285_RS23640 () | 5801..6031 | - | 231 | WP_001261274.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| E5285_RS23645 () | 6504..8768 | - | 2265 | WP_015060475.1 | UvrD-helicase domain-containing protein | - |
| E5285_RS23650 () | 8770..9546 | - | 777 | WP_039052454.1 | hypothetical protein | - |
| E5285_RS23655 () | 10302..11282 | + | 981 | WP_109548742.1 | IS5 family transposase ISKpn26 | Transposase |
| E5285_RS23660 () | 11448..11666 | - | 219 | Protein_14 | IS4 family transposase | - |
| E5285_RS23665 () | 11876..12034 | - | 159 | Protein_15 | RepB family plasmid replication initiator protein | - |
| E5285_RS23680 () | 14395..14502 | - | 108 | Protein_16 | rep protein | - |
| E5285_RS23685 () | 14696..15400 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| E5285_RS23690 () | 15468..16412 | + | 945 | Protein_18 | IS110 family transposase IS5708 | Transposase |
| E5285_RS23700 () | 16820..17173 | + | 354 | Protein_19 | RNA 3'-terminal phosphate cyclase | - |
| E5285_RS23705 () | 17216..19921 | - | 2706 | WP_016240421.1 | HTH-type transcriptional regulator MalT | VF |
| E5285_RS23710 () | 20250..20947 | + | 698 | Protein_21 | IS1 family transposase IS1G | Transposase |
| E5285_RS23715 () | 21044..21253 | - | 210 | WP_001299729.1 | hemolysin expression modulator Hha | - |
| E5285_RS23720 () | 21372..22069 | + | 698 | Protein_23 | IS1 family transposase IS1G | Transposase |
| E5285_RS23725 () | 22463..23032 | + | 570 | WP_113446090.1 | Major fimbrial subunit SMF-1 | VF |
| E5285_RS23730 () | 23091..23786 | + | 696 | WP_064160295.1 | putative fimbrial chaperone YadV | VF |
| E5285_RS23735 () | 23798..26191 | + | 2394 | WP_096200280.1 | Outer membrane usher protein HtrE | VF |
| E5285_RS23740 () | 26212..27231 | + | 1020 | WP_096180002.1 | type 1 fimbrial protein | - |
| E5285_RS23745 () | 27441..28138 | + | 698 | Protein_28 | IS1 family transposase IS1X3 | Transposase |
| E5285_RS23750 () | 28154..28633 | - | 480 | Protein_29 | Transcriptional activator protein CopR | VF |
| E5285_RS23755 () | 28688..29617 | - | 930 | WP_000998778.1 | copper resistance inner membrane protein PcoD | - |
| E5285_RS23760 () | 29622..30002 | - | 381 | WP_000025662.1 | copper resistance system metallochaperone PcoC | - |
| E5285_RS23765 () | 30042..30932 | - | 891 | WP_001378118.1 | copper resistance outer membrane transporter PcoB | - |
| E5285_RS23770 () | 30938..32755 | - | 1818 | WP_000925242.1 | multicopper oxidase PcoA | - |
| E5285_RS23775 () | 32990..33439 | + | 450 | WP_001023231.1 | hypothetical protein | - |
| E5285_RS23780 () | 33714..34451 | + | 738 | WP_000287499.1 | Murein DD-endopeptidase MepM | VF |
| E5285_RS23785 () | 34485..34682 | - | 198 | WP_000843496.1 | DUF2933 domain-containing protein | - |
| E5285_RS23790 () | 34723..37200 | - | 2478 | WP_001398208.1 | Ag(+)-translocating P-type ATPase SilP | - |
| E5285_RS23795 () | 37297..37737 | - | 441 | WP_000758221.1 | hypothetical protein | - |
| E5285_RS23800 () | 37824..40970 | - | 3147 | WP_000574035.1 | Cu(+)/Ag(+) efflux RND transporter permease subunit SilA | - |
| E5285_RS23805 () | 40981..42273 | - | 1293 | WP_001398209.1 | Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB | - |
| E5285_RS23810 () | 42387..42740 | - | 354 | WP_001246155.1 | cation efflux system protein CusF | - |
| E5285_RS23815 () | 42768..44153 | - | 1386 | WP_000475512.1 | Cation efflux system protein CusC | VF |
| E5285_RS23820 () | 44343..45023 | + | 681 | WP_000697969.1 | Transcriptional regulatory protein CusR | VF |
| E5285_RS23825 () | 45016..46491 | + | 1476 | WP_000555737.1 | copper/silver sensor histidine kinase SilS | - |
| E5285_RS23830 () | 46742..47173 | + | 432 | WP_000790483.1 | silver-binding protein SilE | - |
| E5285_RS23835 () | 47317..47667 | + | 351 | WP_000694953.1 | DUF305 domain-containing protein | - |
| E5285_RS23840 () | 48055..48963 | - | 909 | Protein_47 | HNH endonuclease | - |
| E5285_RS23845 () | 49600..50574 | + | 975 | WP_001148756.1 | sensor domain-containing diguanylate cyclase | - |
| E5285_RS23855 () | 51142..51492 | + | 351 | WP_004118279.1 | hypothetical protein | - |
| E5285_RS23860 () | 51543..52286 | + | 744 | WP_000129823.1 | hypothetical protein | - |
| E5285_RS23865 () | 52283..53059 | + | 777 | WP_000015958.1 | site-specific integrase | - |
| E5285_RS23870 () | 53117..53374 | - | 258 | WP_000764642.1 | hypothetical protein | - |
| E5285_RS24475 () | 53503..53607 | - | 105 | WP_032409716.1 | hypothetical protein | - |
| E5285_RS23875 () | 54142..55008 | + | 867 | WP_004118283.1 | replication initiation protein | - |
| E5285_RS23880 () | 55329..55598 | - | 270 | WP_135927456.1 | hypothetical protein | - |
| E5285_RS23885 () | 56013..57218 | + | 1206 | WP_000368714.1 | AAA family ATPase | - |
| E5285_RS23890 () | 57218..58192 | + | 975 | WP_000064120.1 | ParB/RepB/Spo0J family partition protein | - |
| E5285_RS23895 () | 58274..58981 | - | 708 | Protein_58 | translesion error-prone DNA polymerase V subunit UmuC | - |
| E5285_RS23900 () | 59424..60392 | + | 969 | WP_162722054.1 | IS5 family transposase IS903B | Transposase |
| E5285_RS23910 () | 60532..60918 | - | 387 | WP_001039464.1 | hypothetical protein | - |
| E5285_RS23920 () | 60993..61697 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| E5285_RS23925 () | 61765..62430 | - | 666 | Protein_62 | fimbrial protein | - |
| E5285_RS23930 () | 62446..64938 | - | 2493 | WP_000782716.1 | Outer membrane usher protein YehB | VF |
| E5285_RS23935 () | 64954..65646 | - | 693 | WP_001223973.1 | putative fimbrial chaperone YehC | VF |
| E5285_RS23940 () | 65699..66242 | - | 544 | Protein_65 | fimbrial protein | - |
| E5285_RS23945 () | 66516..67213 | - | 698 | Protein_66 | IS1 family transposase IS1S | Transposase |
| E5285_RS23950 () | 67583..67930 | + | 348 | WP_135927458.1 | hypothetical protein | - |
| E5285_RS23955 () | 67948..68522 | - | 575 | Protein_68 | hypothetical protein | - |
| E5285_RS23960 () | 68608..70179 | - | 1572 | WP_087548950.1 | IS66 family transposase ISCro1 | Transposase |
| E5285_RS23965 () | 70199..70546 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| E5285_RS23970 () | 70546..71196 | - | 651 | Protein_71 | transposase | - |
| E5285_RS24555 () | 71282..71353 | + | 72 | Protein_72 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| E5285_RS23980 () | 71399..71650 | + | 252 | Protein_73 | 3'-5' exonuclease | - |
| E5285_RS23990 () | 71866..74541 | - | 2676 | WP_096949680.1 | hypothetical protein | - |
| E5285_RS23995 () | 74844..75845 | + | 1002 | WP_000138753.1 | DUF4238 domain-containing protein | - |
| E5285_RS24000 () | 76070..76543 | - | 474 | WP_096949679.1 | hypothetical protein | - |
| E5285_RS24005 () | 76652..77002 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| E5285_RS24010 () | 77005..77967 | - | 963 | WP_000959874.1 | plasmid segregation protein ParM | - |
| E5285_RS24015 () | 78115..78408 | + | 294 | WP_096949682.1 | hypothetical protein | - |
| E5285_RS24025 () | 78485..79168 | + | 684 | WP_000085884.1 | DNA methylase | - |
| E5285_RS24030 () | 79169..79390 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| E5285_RS24035 () | 79404..79838 | + | 435 | WP_000274483.1 | DUF1380 family protein | - |
| E5285_RS24040 () | 79883..80653 | + | 771 | WP_096949678.1 | hypothetical protein | - |
| E5285_RS24045 () | 80727..81839 | + | 1113 | WP_001300563.1 | IS4 family transposase IS421 | Transposase |
| E5285_RS24055 () | 82539..82841 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| E5285_RS24060 () | 82888..83310 | + | 423 | WP_039022749.1 | DUF1380 family protein | - |
| E5285_RS24065 () | 83307..83498 | + | 192 | WP_001024835.1 | hypothetical protein | - |
| E5285_RS24080 () | 84536..84766 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| E5285_RS24085 () | 84818..86179 | + | 1362 | WP_000170724.1 | DUF3560 domain-containing protein | - |
| E5285_RS24090 () | 86227..86790 | + | 564 | WP_096949677.1 | class I SAM-dependent methyltransferase | - |
| E5285_RS24095 () | 86816..87031 | + | 216 | WP_113446004.1 | hypothetical protein | - |
| E5285_RS24560 () | 87442..87648 | + | 207 | WP_096949675.1 | single-stranded DNA-binding protein | - |
| E5285_RS24120 () | 87674..88213 | + | 540 | WP_000290838.1 | single-stranded DNA-binding protein | - |
| E5285_RS24125 () | 88276..88509 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| E5285_RS24130 () | 88575..90462 | + | 1888 | Protein_95 | ParB/RepB/Spo0J family partition protein | - |
| E5285_RS24135 () | 90517..90951 | + | 435 | WP_096949674.1 | conjugation system SOS inhibitor PsiB | - |
| E5285_RS24140 () | 90948..91667 | + | 720 | WP_001276232.1 | plasmid SOS inhibition protein A | - |
| E5285_RS24480 () | 91679..91867 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - () | 91679..91903 | + | 225 | NuclAT_0 | - | - |
| - () | 91679..91903 | + | 225 | NuclAT_0 | - | - |
| - () | 91679..91903 | + | 225 | NuclAT_0 | - | - |
| - () | 91679..91903 | + | 225 | NuclAT_0 | - | - |
| - () | 91836..91901 | + | 66 | - | - | Antitoxin Detail |
| E5285_RS24145 () | 91947..92105 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| E5285_RS24160 () | 93026..93313 | + | 288 | WP_096949673.1 | hypothetical protein | - |
| E5285_RS24165 () | 93431..94252 | + | 822 | WP_135927465.1 | DUF945 domain-containing protein | - |
| E5285_RS24170 () | 94549..95196 | - | 648 | WP_122998621.1 | hypothetical protein | VF |
| E5285_RS24175 () | 95473..95856 | + | 384 | WP_025269854.1 | relaxosome protein TraM | - |
| E5285_RS24180 () | 96047..96733 | + | 687 | WP_122998622.1 | PAS domain-containing protein | - |
| E5285_RS24185 () | 96827..97054 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| E5285_RS24190 () | 97088..97450 | + | 363 | WP_025269856.1 | type IV conjugative transfer system pilin TraA | - |
| E5285_RS24195 () | 97455..97766 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| E5285_RS24200 () | 97788..98354 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| E5285_RS24205 () | 98365..99069 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| E5285_RS24210 () | 99069..100496 | + | 1428 | WP_000146690.1 | conjugal transfer protein TraB | - |
| E5285_RS24215 () | 100486..101073 | + | 588 | WP_000002772.1 | conjugal transfer protein TraP | - |
| E5285_RS24220 () | 101012..101380 | + | 369 | WP_071588966.1 | conjugal transfer protein TrbD | - |
| E5285_RS24225 () | 101377..101892 | + | 516 | WP_000724019.1 | type IV conjugative transfer system lipoprotein TraV | - |
| E5285_RS24230 () | 102027..102248 | + | 222 | WP_096949669.1 | conjugal transfer protein TraR | - |
| E5285_RS24235 () | 102408..105035 | + | 2628 | WP_061326851.1 | type IV secretion system protein TraC | - |
| E5285_RS24240 () | 105032..105418 | + | 387 | WP_000099693.1 | type-F conjugative transfer system protein TrbI | - |
| E5285_RS24245 () | 105415..106047 | + | 633 | WP_042047196.1 | type-F conjugative transfer system protein TraW | - |
| E5285_RS24250 () | 106044..107036 | + | 993 | WP_001712363.1 | conjugal transfer pilus assembly protein TraU | - |
| E5285_RS24255 () | 107045..107683 | + | 639 | WP_046960657.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| E5285_RS24260 () | 107680..109488 | + | 1809 | WP_096949668.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| E5285_RS24265 () | 109515..109772 | + | 258 | WP_001732201.1 | conjugal transfer protein TrbE | - |
| E5285_RS24270 () | 109765..110508 | + | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| E5285_RS24275 () | 110522..110863 | + | 342 | WP_096949667.1 | conjugal transfer protein TrbA | - |
| E5285_RS24285 () | 111260..111544 | + | 285 | WP_096949665.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| E5285_RS24290 () | 111531..112085 | + | 555 | WP_096949664.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| E5285_RS24295 () | 112015..112389 | + | 375 | WP_135927460.1 | P-type conjugative transfer protein TrbJ | - |
| E5285_RS24300 () | 112343..112735 | + | 393 | WP_096200206.1 | F-type conjugal transfer protein TrbF | - |
| E5285_RS24305 () | 112722..114095 | + | 1374 | WP_113444820.1 | conjugal transfer protein TraH | - |
| E5285_RS24310 () | 114092..116905 | + | 2814 | WP_096949662.1 | conjugal transfer mating pair stabilization protein TraG | - |
| E5285_RS24315 () | 116930..117427 | + | 498 | WP_135927461.1 | surface exclusion protein | - |
| E5285_RS24320 () | 117459..118190 | + | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| E5285_RS24325 () | 118394..118873 | + | 480 | WP_001473214.1 | hypothetical protein | - |
| E5285_RS24330 () | 119154..121343 | + | 2190 | WP_109550760.1 | type IV conjugative transfer system coupling protein TraD | - |
| E5285_RS24335 () | 121343..126613 | + | 5271 | WP_135927463.1 | Multifunctional conjugation protein TraI | Relaxase |
| E5285_RS24340 () | 126633..127373 | + | 741 | WP_016236305.1 | conjugal transfer pilus acetylase TraX | - |
| E5285_RS24345 () | 127428..127988 | + | 561 | WP_096949659.1 | fertility inhibition protein FinO | - |
| E5285_RS24350 () | 128118..128330 | + | 213 | WP_096949658.1 | hypothetical protein | - |
| E5285_RS24355 () | 128544..129241 | + | 698 | Protein_138 | IS1 family transposase IS1S | Transposase |
| E5285_RS24360 () | 129303..130880 | + | 1578 | WP_001323889.1 | Aerotaxis receptor | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|