MGE detailed information
MGE type: Genomic_island MGE length: 104341 bp
Accession: NZ_CP038499 Location: 1065449..1169789 Organism: Dickeya dianthicola strain LAR.16.03.LID Replicon: chromosome
Accession: NZ_CP038499 Location: 1065449..1169789 Organism: Dickeya dianthicola strain LAR.16.03.LID Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4659_RS04940 (E4659_05025) | 1061143..1062390 | - | 1248 | WP_024109745.1 | conjugal transfer protein TraF | - |
| E4659_RS04945 (E4659_05030) | 1063231..1063626 | + | 396 | WP_024104803.1 | helix-turn-helix domain-containing protein | - |
| E4659_RS04950 (E4659_05035) | 1063738..1063887 | - | 150 | Protein_966 | transposase | - |
| E4659_RS04955 (E4659_05040) | 1064006..1064746 | - | 741 | WP_109105035.1 | alpha/beta hydrolase | - |
| E4659_RS04960 (E4659_05050) | 1065222..1065378 | - | 157 | Protein_968 | IS4 family transposase | - |
| E4659_RS04965 (E4659_05055) | 1065449..1065730 | + | 282 | Protein_969 | IS21 family transposase ISEc62 | Transposase |
| E4659_RS04970 (E4659_05060) | 1066505..1067230 | + | 726 | WP_147363573.1 | expansin EXLX1 family cellulose-binding protein | - |
| E4659_RS04975 (E4659_05065) | 1067301..1068257 | + | 957 | WP_119875320.1 | glycoside hydrolase family 5 protein | - |
| E4659_RS04980 (E4659_05070) | 1068377..1068637 | - | 261 | Protein_972 | transposase | - |
| E4659_RS04985 (E4659_05075) | 1068637..1069061 | + | 425 | Protein_973 | efflux RND transporter permease subunit | - |
| E4659_RS04990 (E4659_05080) | 1069160..1070155 | - | 996 | WP_119875321.1 | alpha/beta hydrolase | - |
| E4659_RS04995 (E4659_05085) | 1070589..1071137 | - | 549 | WP_024108334.1 | TetR/AcrR family transcriptional regulator | - |
| E4659_RS05000 (E4659_05090) | 1071276..1072367 | + | 1092 | WP_024104812.1 | alkene reductase | - |
| E4659_RS05005 (E4659_05095) | 1072443..1073225 | + | 783 | WP_024104813.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| E4659_RS05010 (E4659_05100) | 1073358..1074176 | + | 819 | WP_024104814.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| E4659_RS05015 (E4659_05105) | 1074179..1074589 | + | 411 | WP_024104815.1 | hypothetical protein | - |
| E4659_RS05020 (E4659_05110) | 1074586..1075605 | + | 1020 | WP_024108335.1 | L-threonine 3-dehydrogenase | VF |
| E4659_RS05025 (E4659_05115) | 1075806..1076808 | + | 1003 | Protein_981 | IS110 family transposase ISEch4 | Transposase |
| E4659_RS05030 (E4659_05120) | 1077117..1077320 | + | 204 | Protein_982 | transposase | - |
| E4659_RS05035 (E4659_05125) | 1077310..1077945 | - | 636 | Protein_983 | IS256 family transposase ISEc39 | Transposase |
| E4659_RS05040 (E4659_05130) | 1078254..1079258 | - | 1005 | WP_024108039.1 | IS110 family transposase ISEch4 | Transposase |
| E4659_RS05045 (E4659_05135) | 1079542..1079847 | - | 306 | WP_024104817.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| E4659_RS05050 (E4659_05140) | 1079850..1080068 | - | 219 | WP_024104818.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| E4659_RS05055 (E4659_05145) | 1080127..1080453 | - | 327 | Protein_987 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| E4659_RS05060 (E4659_05150) | 1080681..1080863 | - | 183 | WP_024109619.1 | hypothetical protein | - |
| E4659_RS05065 (E4659_05155) | 1081012..1081728 | - | 717 | WP_024104820.1 | SprT family zinc-dependent metalloprotease | - |
| E4659_RS05070 (E4659_05160) | 1081728..1084823 | - | 3096 | WP_024108175.1 | HsdR family type I site-specific deoxyribonuclease | - |
| E4659_RS05075 (E4659_05165) | 1084987..1086054 | - | 1068 | WP_024104822.1 | macro domain-containing protein | Antitoxin Detail |
| E4659_RS05080 (E4659_05170) | 1086051..1086707 | - | 657 | WP_024108176.1 | DUF4433 domain-containing protein | Toxin Detail |
| E4659_RS05085 (E4659_05175) | 1086710..1087285 | - | 576 | WP_024104824.1 | DarT ssDNA thymidine ADP-ribosyltransferase family protein | - |
| E4659_RS05090 (E4659_05180) | 1087290..1088651 | - | 1362 | WP_024104825.1 | restriction endonuclease subunit S | - |
| E4659_RS05095 (E4659_05185) | 1088651..1091086 | - | 2436 | WP_024108177.1 | type I restriction-modification system subunit M | - |
| E4659_RS05100 (E4659_05190) | 1091126..1091365 | - | 240 | WP_024104827.1 | hypothetical protein | - |
| E4659_RS05105 (E4659_05195) | 1091765..1092226 | + | 462 | WP_024104828.1 | hypothetical protein | - |
| E4659_RS05110 (E4659_05200) | 1092223..1092444 | + | 222 | WP_024104829.1 | helix-turn-helix transcriptional regulator | - |
| E4659_RS05115 (E4659_05210) | 1093311..1093499 | + | 189 | WP_024108178.1 | hypothetical protein | - |
| E4659_RS05120 (E4659_05215) | 1093571..1094839 | - | 1269 | WP_024108179.1 | hypothetical protein ; Integrase | Integrase |
| E4659_RS05125 (E4659_05220) | 1095107..1095994 | + | 888 | WP_024108180.1 | Iron-sulfur cluster carrier protein | VF |
| E4659_RS05130 (E4659_05225) | 1095987..1097012 | + | 1026 | WP_024108181.1 | hypothetical protein | - |
| E4659_RS05135 (E4659_05230) | 1096996..1097367 | + | 372 | WP_024108182.1 | hypothetical protein | - |
| E4659_RS05140 (E4659_05235) | 1097364..1097774 | + | 411 | WP_024108183.1 | hypothetical protein | - |
| E4659_RS05145 (E4659_05240) | 1097803..1099140 | + | 1338 | WP_026594635.1 | SPI-7-type island replicative DNA helicase | - |
| E4659_RS05150 (E4659_05245) | 1099140..1100897 | + | 1758 | WP_026594636.1 | ParB family protein | - |
| E4659_RS05155 (E4659_05250) | 1100887..1101135 | + | 249 | WP_024108186.1 | TraR/DksA C4-type zinc finger protein | - |
| E4659_RS05160 (E4659_05255) | 1101128..1101877 | + | 750 | WP_024108187.1 | DUF2786 domain-containing protein | - |
| E4659_RS05165 (E4659_05260) | 1101956..1102531 | + | 576 | WP_024108188.1 | DUF2857 domain-containing protein | - |
| E4659_RS05170 (E4659_05265) | 1102528..1102779 | + | 252 | WP_226066810.1 | hypothetical protein | - |
| E4659_RS05175 (E4659_05270) | 1102824..1104071 | + | 1248 | WP_024108190.1 | STY4528 family pathogenicity island replication protein | - |
| E4659_RS05180 (E4659_05275) | 1104813..1105589 | + | 777 | WP_024108347.1 | TIGR03761 family integrating conjugative element protein | - |
| E4659_RS05185 (E4659_05280) | 1105586..1107610 | + | 2025 | WP_024108348.1 | DNA topoisomerase III | - |
| E4659_RS05190 (E4659_05285) | 1108308..1108787 | + | 480 | WP_024108349.1 | STY4534 family ICE replication protein | - |
| E4659_RS05195 (E4659_05290) | 1108867..1109094 | + | 228 | WP_024108350.1 | hypothetical protein | - |
| E4659_RS05200 (E4659_05295) | 1109173..1109655 | + | 483 | WP_024108351.1 | single-stranded DNA-binding protein | - |
| E4659_RS05205 (E4659_05300) | 1110357..1112150 | + | 1794 | WP_202428355.1 | reverse transcriptase domain-containing protein | - |
| E4659_RS05210 (E4659_05305) | 1112383..1112886 | + | 504 | WP_147363568.1 | hypothetical protein | - |
| E4659_RS05215 (E4659_05310) | 1113026..1113457 | + | 432 | WP_024108354.1 | DUF29 domain-containing protein | - |
| E4659_RS05220 (E4659_05315) | 1113597..1114796 | + | 1200 | WP_051125463.1 | hypothetical protein | VF |
| E4659_RS05225 (E4659_05320) | 1114798..1115235 | + | 438 | WP_024108355.1 | hypothetical protein | VF |
| E4659_RS05230 (E4659_05325) | 1115312..1116940 | + | 1629 | WP_051125478.1 | hypothetical protein | VF |
| E4659_RS05235 (E4659_05330) | 1116948..1118234 | + | 1287 | WP_024108357.1 | hypothetical protein | VF |
| E4659_RS05240 (E4659_05335) | 1118221..1118721 | + | 501 | WP_024108358.1 | hypothetical protein | VF |
| E4659_RS05245 (E4659_05340) | 1118732..1120288 | + | 1557 | WP_024108359.1 | hypothetical protein | VF |
| E4659_RS05250 (E4659_05345) | 1120281..1121390 | + | 1110 | WP_024108360.1 | hypothetical protein | VF |
| E4659_RS05255 (E4659_05350) | 1121400..1121978 | + | 579 | WP_024108361.1 | hypothetical protein | VF |
| E4659_RS05260 (E4659_05355) | 1121984..1122466 | + | 483 | WP_026594661.1 | hypothetical protein | VF |
| E4659_RS05265 (E4659_05360) | 1122499..1123116 | + | 618 | WP_147363567.1 | hypothetical protein | VF |
| E4659_RS05270 (E4659_05365) | 1123119..1124354 | + | 1236 | WP_024108364.1 | hypothetical protein | VF |
| E4659_RS05275 (E4659_05370) | 1124373..1124882 | - | 510 | WP_024108365.1 | cysteinyl-tRNA synthetase | - |
| E4659_RS05280 (E4659_05375) | 1124879..1125907 | - | 1029 | WP_024108366.1 | ATP-binding protein | - |
| E4659_RS05285 (E4659_05380) | 1126304..1127212 | + | 909 | WP_024108367.1 | hypothetical protein | - |
| E4659_RS05290 (E4659_05385) | 1127217..1127951 | + | 735 | WP_024108368.1 | TIGR03759 family integrating conjugative element protein | - |
| E4659_RS05295 (E4659_05390) | 1127981..1128529 | + | 549 | WP_232483770.1 | hypothetical protein | VF |
| E4659_RS05300 (E4659_05395) | 1128526..1129047 | + | 522 | WP_024108370.1 | integrating conjugative element protein | - |
| E4659_RS05305 (E4659_05400) | 1129050..1129370 | + | 321 | WP_024108371.1 | hypothetical protein | - |
| E4659_RS05310 (E4659_05405) | 1129360..1131444 | + | 2085 | WP_024108372.1 | type IV conjugative transfer system coupling protein TraD | - |
| E4659_RS05315 (E4659_05410) | 1131444..1132217 | + | 774 | WP_024108373.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| E4659_RS05320 (E4659_05415) | 1132230..1132421 | + | 192 | WP_024108374.1 | hypothetical protein | - |
| E4659_RS05325 (E4659_05420) | 1132512..1132841 | + | 330 | WP_024108375.1 | RAQPRD family integrative conjugative element protein | - |
| E4659_RS05330 (E4659_05425) | 1132841..1133083 | + | 243 | WP_051125464.1 | TIGR03758 family integrating conjugative element protein | - |
| E4659_RS05335 (E4659_05430) | 1133103..1133441 | + | 339 | WP_024108377.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| E4659_RS05340 (E4659_05435) | 1133458..1133826 | + | 369 | WP_024108378.1 | TIGR03750 family conjugal transfer protein | - |
| E4659_RS05345 (E4659_05440) | 1133829..1134488 | + | 660 | WP_024108379.1 | TIGR03746 family integrating conjugative element protein | - |
| E4659_RS05350 (E4659_05445) | 1134485..1135393 | + | 909 | WP_024108380.1 | TIGR03749 family integrating conjugative element protein | - |
| E4659_RS05355 (E4659_05450) | 1135405..1136919 | + | 1515 | WP_024108381.1 | TIGR03752 family integrating conjugative element protein | - |
| E4659_RS05360 (E4659_05455) | 1136931..1137344 | + | 414 | WP_024108382.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| E4659_RS05365 (E4659_05460) | 1137344..1140163 | + | 2820 | WP_024108383.1 | conjugative transfer ATPase | - |
| E4659_RS05370 (E4659_05465) | 1140172..1140588 | + | 417 | WP_232483767.1 | hypothetical protein | - |
| E4659_RS05375 (E4659_05470) | 1140729..1141715 | - | 987 | WP_024108385.1 | caspase family protein | - |
| E4659_RS05380 (E4659_05475) | 1141715..1142125 | - | 411 | WP_024108386.1 | TIR domain-containing protein | - |
| E4659_RS05385 (E4659_05480) | 1142463..1142864 | + | 402 | WP_024108387.1 | TIGR03757 family integrating conjugative element protein | - |
| E4659_RS05390 (E4659_05485) | 1142867..1143850 | + | 984 | WP_024108388.1 | TIGR03756 family integrating conjugative element protein | - |
| E4659_RS05395 (E4659_05490) | 1143898..1145241 | + | 1344 | WP_232483771.1 | integrating conjugative element protein | - |
| E4659_RS05400 (E4659_05495) | 1145328..1145600 | + | 273 | WP_051125465.1 | hypothetical protein | - |
| E4659_RS05405 (E4659_05500) | 1145614..1147164 | + | 1551 | WP_035044552.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| E4659_RS05410 (E4659_05505) | 1147211..1147522 | - | 312 | WP_024108391.1 | hypothetical protein | - |
| E4659_RS05415 (E4659_05510) | 1147661..1147800 | + | 140 | Protein_1059 | IS3 family transposase | - |
| E4659_RS05420 (E4659_05515) | 1147978..1151619 | + | 3642 | WP_232483768.1 | AAA domain-containing protein | - |
| E4659_RS05425 | 1151751..1152128 | + | 378 | WP_024108393.1 | hypothetical protein | - |
| E4659_RS05430 (E4659_05520) | 1152134..1152343 | + | 210 | WP_232483769.1 | DUF2726 domain-containing protein | - |
| E4659_RS05435 (E4659_05525) | 1153540..1154430 | + | 891 | WP_024108394.1 | hypothetical protein ; Integrase | Integrase |
| E4659_RS05440 (E4659_05530) | 1155091..1155372 | + | 282 | WP_024108396.1 | hypothetical protein | - |
| E4659_RS05445 (E4659_05540) | 1155711..1156082 | + | 372 | WP_024108398.1 | glycosyltransferase | - |
| E4659_RS05450 (E4659_05550) | 1156531..1157016 | + | 486 | WP_024108399.1 | hypothetical protein | - |
| E4659_RS05455 (E4659_05555) | 1157163..1159046 | + | 1884 | WP_158666893.1 | zincin-like metallopeptidase domain-containing protein | - |
| E4659_RS05460 (E4659_05560) | 1159124..1160044 | + | 921 | WP_024108401.1 | hypothetical protein | - |
| E4659_RS05465 (E4659_05565) | 1160076..1160306 | - | 231 | WP_024108402.1 | hypothetical protein | - |
| E4659_RS05470 (E4659_05570) | 1160375..1160644 | - | 270 | WP_024108403.1 | hypothetical protein | - |
| E4659_RS05475 (E4659_05575) | 1160978..1161670 | - | 693 | WP_024108404.1 | DUF2786 domain-containing protein | - |
| E4659_RS05480 (E4659_05580) | 1161895..1162227 | - | 333 | WP_147363566.1 | hypothetical protein | - |
| E4659_RS05485 (E4659_05585) | 1162232..1162996 | - | 765 | WP_024108407.1 | hypothetical protein | - |
| E4659_RS05490 (E4659_05590) | 1163051..1163503 | - | 453 | WP_024108408.1 | hypothetical protein | - |
| E4659_RS05495 (E4659_05595) | 1163603..1163896 | - | 294 | WP_024108409.1 | hypothetical protein | - |
| E4659_RS05500 (E4659_05600) | 1163893..1164075 | - | 183 | WP_071599217.1 | hypothetical protein | - |
| E4659_RS05505 (E4659_05605) | 1164079..1165149 | - | 1071 | WP_024108410.1 | hypothetical protein | - |
| E4659_RS05510 (E4659_05610) | 1165207..1166412 | - | 1206 | WP_024108411.1 | conjugal transfer protein TraF | - |
| E4659_RS05515 (E4659_05615) | 1166520..1167413 | - | 894 | WP_024108412.1 | hypothetical protein | - |
| E4659_RS05520 (E4659_05620) | 1167604..1168179 | - | 576 | WP_147363565.1 | hypothetical protein | - |
| E4659_RS05525 (E4659_05625) | 1168281..1169789 | + | 1509 | WP_071703473.1 | TraI domain-containing protein | - |
| E4659_RS05530 (E4659_05630) | 1169801..1170757 | + | 957 | WP_024108415.1 | site-specific integrase | - |
| E4659_RS05540 (E4659_05640) | 1171726..1173879 | + | 2154 | WP_024108416.1 | ornithine decarboxylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|