MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 38515 bp
Accession: NZ_CP038307 Location: 1..38515 Organism: Escherichia coli O157:H7 strain SS NE 1040-1 Replicon: plasmid pNE1040-3
Accession: NZ_CP038307 Location: 1..38515 Organism: Escherichia coli O157:H7 strain SS NE 1040-1 Replicon: plasmid pNE1040-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4U78_RS27360 () | 732..1391 | - | 660 | WP_000516227.1 | peptidyl-arginine deiminase | - |
| E4U78_RS27365 () | 1506..2321 | - | 816 | WP_000018886.1 | Tyrosine recombinase XerD | VF |
| E4U78_RS27370 () | 3159..3638 | + | 480 | WP_000179690.1 | hypothetical protein | - |
| E4U78_RS27375 () | 3745..4017 | - | 273 | WP_001031147.1 | hypothetical protein | - |
| E4U78_RS27380 () | 4222..4992 | + | 771 | WP_000418054.1 | hypothetical protein | - |
| E4U78_RS27385 () | 5102..6058 | - | 957 | WP_001281421.1 | Abi family protein | - |
| E4U78_RS27390 () | 6558..6797 | - | 240 | WP_000118581.1 | hypothetical protein | - |
| E4U78_RS27395 () | 7076..7339 | + | 264 | WP_171878199.1 | hypothetical protein | - |
| E4U78_RS27400 () | 7547..9703 | - | 2157 | WP_001235741.1 | type IA DNA topoisomerase | - |
| E4U78_RS27405 () | 9715..10302 | - | 588 | WP_000280692.1 | hypothetical protein | - |
| E4U78_RS27410 () | 10443..10748 | - | 306 | WP_001223992.1 | IncN plasmid KikA protein | - |
| E4U78_RS27415 () | 10764..12731 | - | 1968 | WP_000726938.1 | type IV secretory system conjugative DNA transfer family protein | - |
| E4U78_RS27420 () | 12782..13801 | - | 1020 | WP_001287982.1 | Type IV secretion system protein VirB11 | VF |
| E4U78_RS27425 () | 13801..14943 | - | 1143 | WP_000787412.1 | Type IV secretion system protein virB10 | VF |
| E4U78_RS27430 () | 14933..15712 | - | 780 | WP_000592647.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| E4U78_RS27435 () | 15709..16446 | - | 738 | WP_000364523.1 | Type IV secretion system protein PtlE | VF |
| E4U78_RS27440 () | 16577..18949 | - | 2373 | WP_001195524.1 | VirB4 family type IV secretion system protein | - |
| E4U78_RS27445 () | 18952..19272 | - | 321 | WP_001000143.1 | VirB3 family type IV secretion system protein | - |
| E4U78_RS27450 () | 19330..19623 | - | 294 | WP_001031683.1 | TrbC/VirB2 family protein | - |
| E4U78_RS27455 () | 19616..20227 | - | 612 | WP_171878200.1 | Type IV secretion system protein virB1 | VF |
| E4U78_RS27460 () | 20560..21555 | + | 996 | WP_001103652.1 | type IV secretion system protein | - |
| E4U78_RS27465 () | 21557..22198 | + | 642 | WP_000844300.1 | conjugal transfer protein TrbJ | - |
| E4U78_RS27470 () | 22284..23823 | - | 1540 | Protein_23 | IS66 family transposase ISEc8 | Transposase |
| E4U78_RS27475 () | 23873..24221 | - | 349 | Protein_24 | IS66 family transposase ISEc8 | Transposase |
| E4U78_RS27480 () | 24218..24598 | - | 381 | WP_171878201.1 | IS66 family transposase ISEc8 | Transposase |
| E4U78_RS27485 () | 24642..24896 | + | 255 | WP_171878202.1 | EexN family lipoprotein | - |
| E4U78_RS27490 () | 24937..25224 | - | 288 | WP_000332251.1 | helix-turn-helix transcriptional regulator | - |
| E4U78_RS27495 () | 25423..25761 | + | 339 | WP_000612441.1 | hypothetical protein | VF |
| E4U78_RS27500 () | 26113..27117 | - | 1005 | WP_001208090.1 | replication initiation protein | - |
| E4U78_RS27505 () | 28741..29064 | + | 324 | WP_000432877.1 | hypothetical protein | - |
| E4U78_RS27510 () | 29104..29328 | + | 225 | WP_000866040.1 | hypothetical protein | - |
| E4U78_RS27515 () | 29424..29648 | + | 225 | WP_000749828.1 | hypothetical protein | - |
| E4U78_RS27520 () | 29699..29965 | + | 267 | WP_000868277.1 | hypothetical protein | Toxin Detail |
| E4U78_RS27525 () | 29955..30197 | + | 243 | WP_001479502.1 | transcriptional regulator | Antitoxin Detail |
| E4U78_RS27530 () | 30636..30965 | + | 330 | WP_000855123.1 | hypothetical protein | - |
| E4U78_RS27535 () | 31023..31301 | + | 279 | WP_000545933.1 | hypothetical protein | - |
| E4U78_RS27540 () | 31734..31916 | + | 183 | WP_000833471.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| E4U78_RS27545 () | 31941..32378 | + | 438 | WP_000466317.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| E4U78_RS27550 () | 32407..33111 | - | 705 | WP_001279862.1 | hypothetical protein | - |
| E4U78_RS27555 () | 33108..33869 | - | 762 | WP_001097938.1 | conjugal transfer protein TraL | - |
| E4U78_RS27560 () | 33879..34286 | - | 408 | WP_001190621.1 | hypothetical protein | - |
| E4U78_RS27565 () | 34633..34968 | + | 336 | WP_000963832.1 | hypothetical protein | Relaxase |
| E4U78_RS27570 () | 34965..38162 | + | 3198 | WP_000586935.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|