MGE detailed information
MGE type: Conjugative plasmid MGE length: 73152 bp
Accession: NZ_CP037947 Location: 1..73152 Organism: Escherichia coli strain CFSAN027346 Replicon: plasmid pCFSAN027346-2
Accession: NZ_CP037947 Location: 1..73152 Organism: Escherichia coli strain CFSAN027346 Replicon: plasmid pCFSAN027346-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKI52_RS30260 () | 34..174 | + | 141 | WP_021503378.1 | hypothetical protein | - |
| EKI52_RS29520 () | 247..516 | + | 270 | WP_000079939.1 | hypothetical protein | Antitoxin Detail |
| EKI52_RS29525 () | 513..677 | + | 165 | WP_001388374.1 | hypothetical protein | Toxin Detail |
| EKI52_RS29530 () | 725..1648 | + | 924 | WP_001415483.1 | hypothetical protein | - |
| EKI52_RS29540 () | 2090..2470 | + | 381 | WP_001696636.1 | HTH domain-containing protein | - |
| EKI52_RS29545 () | 2582..2986 | + | 405 | Protein_5 | IS91 family transposase ISPps1 | Transposase |
| EKI52_RS29550 () | 3093..3929 | - | 837 | WP_000480972.1 | hypothetical protein | ARG |
| EKI52_RS29555 () | 3929..4732 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| EKI52_RS29560 () | 4793..5608 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| EKI52_RS29570 () | 5945..6148 | + | 204 | WP_000131876.1 | hypothetical protein | - |
| EKI52_RS29575 () | 6139..6360 | + | 222 | WP_001251694.1 | hypothetical protein | - |
| EKI52_RS29580 () | 6595..6924 | - | 330 | WP_001415369.1 | hypothetical protein | - |
| EKI52_RS29585 () | 7111..7971 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| EKI52_RS29590 () | 8262..8966 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| EKI52_RS29595 () | 9062..9571 | + | 510 | WP_000571065.1 | Dihydrofolate reductase | ARG |
| EKI52_RS29600 () | 9568..10224 | + | 657 | WP_000144779.1 | metallophosphoesterase | - |
| EKI52_RS29605 () | 10261..10965 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| EKI52_RS30410 () | 11189..11367 | + | 179 | Protein_17 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| EKI52_RS29615 () | 11438..12319 | + | 882 | WP_000005461.1 | hypothetical protein | - |
| EKI52_RS29620 () | 12254..12673 | - | 420 | WP_024181414.1 | hypothetical protein | - |
| EKI52_RS29625 () | 12782..13132 | - | 351 | WP_001414994.1 | plasmid partitioning/stability family protein | - |
| EKI52_RS29630 () | 13135..14097 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| EKI52_RS29640 () | 14632..15534 | + | 903 | WP_133342199.1 | DUF1281 domain-containing protein | - |
| EKI52_RS29645 () | 15538..15842 | + | 305 | Protein_23 | hypothetical protein | - |
| EKI52_RS29650 () | 15919..16602 | + | 684 | WP_000086185.1 | DNA methylase | - |
| EKI52_RS29655 () | 16603..16824 | + | 222 | WP_096955245.1 | hypothetical protein | - |
| EKI52_RS29660 () | 16838..17272 | + | 435 | WP_000274447.1 | DUF1380 family protein | - |
| EKI52_RS30415 () | 17317..18087 | + | 771 | WP_001006247.1 | hypothetical protein | - |
| EKI52_RS29675 () | 18626..18928 | + | 303 | WP_072126845.1 | antirestriction protein | - |
| EKI52_RS29680 () | 18975..19397 | + | 423 | WP_000271709.1 | DUF1380 family protein | - |
| EKI52_RS29685 () | 19394..19585 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| EKI52_RS29690 () | 19905..20498 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| EKI52_RS29695 () | 20611..21816 | - | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| EKI52_RS29700 () | 21898..22521 | + | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| EKI52_RS30265 () | 22639..22887 | - | 249 | WP_071703862.1 | hypothetical protein | - |
| EKI52_RS29715 () | 23399..23629 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| EKI52_RS29720 () | 23681..25042 | + | 1362 | WP_000170673.1 | DUF3560 domain-containing protein | - |
| EKI52_RS29725 () | 25089..25652 | + | 564 | WP_001311069.1 | class I SAM-dependent methyltransferase | - |
| EKI52_RS29730 () | 25804..26118 | + | 315 | WP_133342201.1 | hypothetical protein | - |
| EKI52_RS29745 () | 26591..27118 | + | 528 | WP_000290816.1 | single-stranded DNA-binding protein | - |
| EKI52_RS29750 () | 27174..27407 | + | 234 | WP_058653442.1 | DUF905 domain-containing protein | - |
| EKI52_RS29755 () | 27466..29424 | + | 1959 | WP_058653444.1 | ParB/RepB/Spo0J family partition protein | - |
| EKI52_RS29760 () | 29479..29913 | + | 435 | WP_000845949.1 | conjugation system SOS inhibitor PsiB | - |
| EKI52_RS29765 () | 29910..30629 | + | 720 | WP_033807739.1 | plasmid SOS inhibition protein A | - |
| - () | 30641..30865 | + | 225 | NuclAT_0 | - | - |
| - () | 30641..30865 | + | 225 | NuclAT_0 | - | - |
| - () | 30641..30865 | + | 225 | NuclAT_0 | - | - |
| - () | 30641..30865 | + | 225 | NuclAT_0 | - | - |
| - () | 30798..30863 | + | 66 | - | - | Antitoxin Detail |
| EKI52_RS29775 () | 30909..31067 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| EKI52_RS29780 () | 31305..31682 | - | 378 | Protein_45 | hypothetical protein | - |
| EKI52_RS29790 () | 31982..32278 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| EKI52_RS29795 () | 32389..33210 | + | 822 | WP_021503380.1 | DUF945 domain-containing protein | - |
| EKI52_RS29800 () | 33506..34153 | - | 648 | WP_072208664.1 | hypothetical protein | VF |
| EKI52_RS29805 () | 34439..34822 | + | 384 | WP_001151564.1 | relaxosome protein TraM | - |
| EKI52_RS29810 () | 35016..35702 | + | 687 | WP_000332487.1 | PAS domain-containing protein | - |
| EKI52_RS29815 () | 35796..36023 | + | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| EKI52_RS29820 () | 36057..36416 | + | 360 | WP_019842162.1 | type IV conjugative transfer system pilin TraA | - |
| EKI52_RS29825 () | 36431..36742 | + | 312 | WP_000012111.1 | type IV conjugative transfer system protein TraL | - |
| EKI52_RS29830 () | 36764..37330 | + | 567 | WP_021503373.1 | type IV conjugative transfer system protein TraE | - |
| EKI52_RS29835 () | 37317..38045 | + | 729 | WP_001230809.1 | type-F conjugative transfer system secretin TraK | - |
| EKI52_RS29840 () | 38045..39496 | + | 1452 | WP_021503386.1 | conjugal transfer protein TraB | - |
| EKI52_RS29845 () | 39465..40052 | + | 588 | WP_023908347.1 | conjugal transfer protein TraP | - |
| EKI52_RS29850 () | 39991..40359 | + | 369 | WP_071802386.1 | DUF2689 domain-containing protein | - |
| EKI52_RS29855 () | 40352..40603 | + | 252 | WP_021503369.1 | conjugal transfer protein TrbG | - |
| EKI52_RS29860 () | 40600..41115 | + | 516 | WP_021503364.1 | type IV conjugative transfer system lipoprotein TraV | - |
| EKI52_RS29865 () | 41250..41471 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| EKI52_RS29870 () | 41464..41877 | + | 414 | WP_021503371.1 | hypothetical protein | - |
| EKI52_RS29875 () | 41870..42343 | + | 474 | WP_021503376.1 | hypothetical protein | - |
| EKI52_RS29880 () | 42423..42641 | + | 219 | WP_016230909.1 | hypothetical protein | - |
| EKI52_RS29885 () | 42669..43016 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| EKI52_RS29890 () | 43143..45773 | + | 2631 | WP_021503365.1 | type IV secretion system protein TraC | - |
| EKI52_RS29895 () | 45770..46156 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| EKI52_RS29900 () | 46153..46785 | + | 633 | WP_001203727.1 | type-F conjugative transfer system protein TraW | - |
| EKI52_RS29905 () | 46782..47774 | + | 993 | WP_000830190.1 | conjugal transfer pilus assembly protein TraU | - |
| EKI52_RS29910 () | 47804..48109 | + | 306 | WP_000224413.1 | hypothetical protein | - |
| EKI52_RS29915 () | 48118..48756 | + | 639 | WP_001080257.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| EKI52_RS29920 () | 48753..50603 | + | 1851 | WP_021503368.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| EKI52_RS29925 () | 50630..50887 | + | 258 | WP_000864319.1 | conjugal transfer protein TrbE | - |
| EKI52_RS29930 () | 50880..51623 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| EKI52_RS29935 () | 51639..51977 | + | 339 | WP_021503383.1 | conjugal transfer protein TrbA | - |
| EKI52_RS29940 () | 52104..52388 | + | 285 | WP_000623730.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| EKI52_RS29945 () | 52375..52920 | + | 546 | WP_000059832.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| EKI52_RS29950 () | 52850..53191 | + | 342 | WP_071802387.1 | P-type conjugative transfer protein TrbJ | - |
| EKI52_RS29955 () | 53139..53564 | + | 426 | WP_001448114.1 | F-type conjugal transfer protein TrbF | - |
| EKI52_RS29960 () | 53551..54924 | + | 1374 | WP_001137361.1 | conjugal transfer protein TraH | - |
| EKI52_RS29965 () | 54921..57740 | + | 2820 | WP_021503375.1 | conjugal transfer mating pair stabilization protein TraG | - |
| EKI52_RS29970 () | 57759..58256 | + | 498 | WP_000605862.1 | entry exclusion protein | - |
| EKI52_RS29975 () | 58288..59019 | + | 732 | WP_021503382.1 | complement resistance protein TraT | - |
| EKI52_RS29980 () | 59222..59959 | + | 738 | WP_021503363.1 | hypothetical protein | - |
| EKI52_RS29985 () | 60010..62244 | + | 2235 | WP_021503457.1 | type IV conjugative transfer system coupling protein TraD | - |
| EKI52_RS29990 () | 62244..67514 | + | 5271 | WP_096955223.1 | Multifunctional conjugation protein TraI | Relaxase |
| EKI52_RS29995 () | 67534..68280 | + | 747 | WP_096955222.1 | conjugal transfer pilus acetylase TraX | - |
| EKI52_RS30000 () | 68335..68895 | + | 561 | WP_096955221.1 | fertility inhibition protein FinO | - |
| EKI52_RS30005 () | 69027..69239 | + | 213 | WP_001301409.1 | ANR family transcriptional regulator | - |
| EKI52_RS30010 () | 69484..69945 | + | 462 | WP_000978819.1 | thermonuclease family protein | - |
| EKI52_RS30015 () | 69991..70200 | + | 210 | WP_001333231.1 | hemolysin expression modulator Hha | - |
| EKI52_RS30020 () | 70238..70828 | + | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
| EKI52_RS30025 () | 71068..71316 | + | 249 | WP_000083839.1 | replication regulatory protein RepA | - |
| EKI52_RS30035 () | 71561..71635 | + | 75 | WP_001375168.1 | RepA leader peptide Tap | - |
| EKI52_RS30040 () | 71628..72485 | + | 858 | WP_032251529.1 | incFII family plasmid replication initiator RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|