MGE detailed information
MGE type: Prophage MGE length: 106932 bp
Accession: NZ_CP037941 Location: 3641187..3748118 Organism: Escherichia coli strain CFSAN027350 Replicon: chromosome
Accession: NZ_CP037941 Location: 3641187..3748118 Organism: Escherichia coli strain CFSAN027350 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKI55_RS18470 () | 3637043..3637843 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| EKI55_RS18475 () | 3637856..3638707 | + | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| EKI55_RS18480 () | 3638762..3639220 | + | 459 | WP_032345543.1 | DUF986 family protein | - |
| EKI55_RS18485 () | 3639649..3640215 | + | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| EKI55_RS18490 () | 3640212..3641021 | - | 810 | WP_000010107.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| EKI55_RS18495 () | 3641187..3641396 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| EKI55_RS18500 () | 3641409..3641552 | - | 144 | WP_001295496.1 | YobF family protein | - |
| EKI55_RS18505 () | 3642221..3642508 | - | 288 | WP_001006866.1 | YebO family protein | - |
| EKI55_RS18510 () | 3642583..3642726 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| EKI55_RS18515 () | 3642885..3643124 | + | 240 | WP_001211011.1 | hypothetical protein | - |
| EKI55_RS18520 () | 3643267..3644058 | - | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| EKI55_RS18525 () | 3644235..3645608 | + | 1374 | WP_001127210.1 | MFS transporter | - |
| EKI55_RS18530 () | 3645654..3646535 | - | 882 | WP_000984517.1 | protease HtpX | - |
| EKI55_RS18535 () | 3646727..3648775 | - | 2049 | WP_001315679.1 | carboxy terminal-processing peptidase | - |
| EKI55_RS18540 () | 3648795..3649493 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| EKI55_RS18545 () | 3649590..3650087 | - | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| EKI55_RS18550 () | 3650217..3651500 | + | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| EKI55_RS18555 () | 3651469..3654102 | + | 2634 | WP_001299674.1 | hypothetical protein | VF |
| EKI55_RS18560 () | 3654182..3655621 | + | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EKI55_RS18565 () | 3655739..3655975 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EKI55_RS18570 () | 3656080..3656271 | + | 192 | WP_001296140.1 | YebW family protein | - |
| EKI55_RS18575 () | 3656272..3656844 | - | 573 | Protein_3553 | protein-serine/threonine phosphatase | - |
| EKI55_RS18580 () | 3656904..3657598 | + | 695 | WP_085949012.1 | IS1 family transposase IS1N | Transposase |
| EKI55_RS18585 () | 3657613..3657702 | - | 90 | Protein_3555 | serine/threonine-protein phosphatase | - |
| EKI55_RS18590 () | 3658387..3658653 | + | 267 | Protein_3556 | hypothetical protein | - |
| EKI55_RS18595 () | 3658657..3659307 | + | 651 | WP_001121225.1 | hypothetical protein | VF |
| EKI55_RS18605 () | 3659532..3660407 | - | 876 | WP_000491545.1 | hypothetical protein | VF |
| EKI55_RS18610 () | 3660548..3660817 | - | 270 | WP_001023379.1 | phage tail fiber C-terminal domain-containing protein | - |
| EKI55_RS18615 () | 3660819..3662132 | - | 1314 | WP_000279010.1 | ISNCY family transposase KIS | Transposase |
| EKI55_RS18620 () | 3662197..3662796 | - | 600 | WP_001230428.1 | hypothetical protein | VF |
| EKI55_RS18625 () | 3662864..3666256 | - | 3393 | WP_096071078.1 | host specificity protein J | - |
| EKI55_RS18630 () | 3666493..3667125 | - | 633 | WP_072141513.1 | tail assembly protein | - |
| EKI55_RS18635 () | 3667071..3667814 | - | 744 | WP_061330346.1 | C40 family peptidase | - |
| EKI55_RS18640 () | 3667820..3668515 | - | 696 | WP_089577646.1 | phage minor tail protein L | - |
| EKI55_RS18645 () | 3668515..3668844 | - | 330 | WP_000847298.1 | phage tail protein | - |
| EKI55_RS18650 () | 3668841..3671454 | - | 2614 | Protein_3567 | phage tail tape measure protein | - |
| EKI55_RS18655 () | 3671435..3671848 | - | 414 | WP_000533440.1 | phage tail assembly protein T | - |
| EKI55_RS18660 () | 3671875..3672297 | - | 423 | WP_000479051.1 | phage minor tail protein G | - |
| EKI55_RS18665 () | 3672311..3673063 | - | 753 | WP_000235101.1 | Ig domain-containing protein | - |
| EKI55_RS18670 () | 3673071..3673466 | - | 396 | WP_000683137.1 | phage minor tail U family protein | - |
| EKI55_RS18675 () | 3673463..3674041 | - | 579 | WP_000975099.1 | phage tail protein | - |
| EKI55_RS18680 () | 3674053..3674406 | - | 354 | WP_000752994.1 | head-tail joining protein | - |
| EKI55_RS18685 () | 3674418..3674813 | - | 396 | WP_000158897.1 | DNA-packaging protein FI | - |
| EKI55_RS18690 () | 3674855..3675880 | - | 1026 | WP_000063258.1 | major capsid protein | - |
| EKI55_RS18695 () | 3675936..3676268 | - | 333 | WP_001295978.1 | head decoration protein | - |
| EKI55_RS18700 () | 3676278..3677597 | - | 1320 | WP_000123254.1 | S49 family peptidase | - |
| EKI55_RS18705 () | 3677578..3679179 | - | 1602 | WP_024026143.1 | phage portal protein | - |
| EKI55_RS18710 () | 3679176..3679382 | - | 207 | WP_000198153.1 | gpW family protein | - |
| EKI55_RS18715 () | 3679379..3681304 | - | 1926 | WP_001027379.1 | phage terminase large subunit family protein | - |
| EKI55_RS18720 () | 3681279..3681824 | - | 546 | WP_000453587.1 | DNA-packaging protein | - |
| EKI55_RS18725 () | 3682266..3682733 | - | 468 | WP_001082545.1 | lysis protein | - |
| EKI55_RS18730 () | 3683032..3683565 | - | 534 | WP_000992167.1 | lysozyme | - |
| EKI55_RS18735 () | 3683616..3683960 | - | 345 | WP_047086596.1 | YdfR family protein | - |
| EKI55_RS18740 () | 3683965..3684180 | - | 216 | WP_000284518.1 | class II holin family protein | - |
| EKI55_RS18745 () | 3684253..3684930 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| EKI55_RS18750 () | 3684930..3685277 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| EKI55_RS18755 () | 3685297..3686868 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| EKI55_RS18760 () | 3687075..3687968 | + | 894 | WP_089577656.1 | hypothetical protein | VF |
| EKI55_RS18765 () | 3688094..3688363 | - | 270 | WP_001023445.1 | phage tail fiber C-terminal domain-containing protein | - |
| EKI55_RS18770 () | 3688436..3688819 | + | 384 | Protein_3591 | IS66 family transposase ISCro1 | Transposase |
| EKI55_RS18775 () | 3688817..3689092 | - | 276 | Protein_3592 | DUF1737 domain-containing protein | - |
| EKI55_RS18780 () | 3689414..3689666 | - | 253 | Protein_3593 | DUF3927 family protein | - |
| EKI55_RS18785 () | 3689663..3690025 | - | 363 | Protein_3594 | tellurite resistance TerB family protein | - |
| EKI55_RS18790 () | 3690263..3691084 | - | 822 | WP_000762928.1 | antitermination protein | - |
| EKI55_RS18795 () | 3691081..3691455 | - | 375 | WP_001217413.1 | RusA family crossover junction endodeoxyribonuclease | - |
| EKI55_RS18800 () | 3691468..3692517 | - | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| EKI55_RS18805 () | 3692519..3692791 | - | 273 | WP_000191872.1 | hypothetical protein | - |
| EKI55_RS18810 () | 3692913..3693257 | - | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| EKI55_RS18815 () | 3693377..3693532 | - | 156 | WP_000813258.1 | type I toxin-antitoxin system Hok family toxin | - |
| EKI55_RS18820 () | 3693823..3694380 | - | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| EKI55_RS18825 () | 3694382..3694600 | - | 219 | WP_000683609.1 | DUF4014 family protein | - |
| EKI55_RS18830 () | 3694728..3695039 | - | 312 | WP_001289673.1 | hypothetical protein | - |
| EKI55_RS18835 () | 3695032..3695259 | - | 228 | WP_000699809.1 | hypothetical protein | - |
| EKI55_RS18840 () | 3695256..3695537 | - | 282 | WP_000603384.1 | DNA-binding protein | - |
| EKI55_RS18845 () | 3695570..3696331 | - | 762 | WP_000450872.1 | DUF1627 domain-containing protein | - |
| EKI55_RS18850 () | 3696357..3697098 | - | 742 | Protein_3607 | ATP-binding protein | - |
| EKI55_RS18855 () | 3697105..3698067 | - | 963 | WP_001444941.1 | helix-turn-helix domain-containing protein | - |
| EKI55_RS18860 () | 3698090..3698515 | - | 426 | WP_000693943.1 | Rha family transcriptional regulator | - |
| EKI55_RS18865 () | 3698512..3698814 | - | 303 | WP_000172738.1 | transcriptional regulator | - |
| EKI55_RS18870 () | 3698912..3699283 | + | 372 | WP_001169687.1 | hypothetical protein | - |
| EKI55_RS18875 () | 3699304..3699495 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| EKI55_RS18880 () | 3699497..3699736 | + | 240 | WP_050439653.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| EKI55_RS18885 () | 3700062..3700214 | + | 153 | WP_001427316.1 | DUF1391 family protein | - |
| EKI55_RS18890 () | 3700635..3700856 | + | 222 | WP_000560218.1 | killing protein KilR | - |
| EKI55_RS18895 () | 3700850..3701026 | + | 177 | WP_000245534.1 | hypothetical protein | - |
| EKI55_RS18900 () | 3701100..3701375 | + | 276 | WP_001307773.1 | hypothetical protein | - |
| EKI55_RS18905 () | 3701474..3704125 | + | 2652 | WP_032346644.1 | exodeoxyribonuclease VIII | - |
| EKI55_RS18910 () | 3704118..3704927 | + | 810 | WP_000166317.1 | recombination protein RecT | - |
| EKI55_RS18915 () | 3704984..3705178 | + | 195 | WP_050439817.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| EKI55_RS18920 () | 3705171..3705359 | + | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - () | 3705177..3705355 | - | 179 | NuclAT_1 | - | Antitoxin Detail |
| - () | 3705177..3705355 | - | 179 | NuclAT_1 | - | Antitoxin Detail |
| - () | 3705177..3705355 | - | 179 | NuclAT_1 | - | Antitoxin Detail |
| - () | 3705177..3705355 | - | 179 | NuclAT_1 | - | Antitoxin Detail |
| EKI55_RS18925 () | 3705466..3705747 | + | 282 | WP_001443927.1 | excisionase | - |
| EKI55_RS18930 () | 3705713..3706789 | + | 1077 | WP_001189091.1 | hypothetical protein ; Integrase | Integrase |
| - () | 3706920..3707154 | + | 235 | - | - | Antitoxin Detail |
| - () | 3706921..3707024 | - | 104 | - | - | Toxin Detail |
| EKI55_RS18935 () | 3707182..3707523 | - | 342 | WP_000976492.1 | YebY family protein | - |
| EKI55_RS18940 () | 3707536..3708408 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| EKI55_RS18945 () | 3708412..3708786 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EKI55_RS18950 () | 3708925..3709155 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EKI55_RS18955 () | 3709257..3709913 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EKI55_RS18960 () | 3709937..3710599 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EKI55_RS18965 () | 3710596..3712656 | - | 2061 | WP_000936951.1 | oligopeptidase B | - |
| EKI55_RS18970 () | 3712865..3713524 | - | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| EKI55_RS18975 () | 3713851..3714207 | - | 357 | WP_001295500.1 | protein YebF | - |
| EKI55_RS18980 () | 3714274..3714564 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| EKI55_RS18985 () | 3714698..3715876 | + | 1179 | WP_000173494.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| EKI55_RS18990 () | 3715932..3716573 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| EKI55_RS18995 () | 3716610..3718421 | - | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| EKI55_RS19000 () | 3718656..3720131 | - | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| EKI55_RS19005 () | 3720469..3721338 | + | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| EKI55_RS19010 () | 3721466..3722908 | + | 1443 | WP_000091148.1 | pyruvate kinase | - |
| EKI55_RS19015 () | 3722968..3723810 | - | 843 | WP_000546440.1 | Nif3-like dinuclear metal center hexameric protein | - |
| EKI55_RS19020 () | 3723833..3724672 | - | 840 | WP_001345525.1 | alpha/beta hydrolase | - |
| EKI55_RS19025 () | 3724765..3725562 | - | 798 | WP_000582549.1 | amidohydrolase family protein | - |
| EKI55_RS19030 () | 3725584..3727383 | - | 1800 | WP_000633893.1 | glycoside hydrolase family 13 protein | - |
| EKI55_RS19035 () | 3727403..3728236 | - | 834 | WP_000357161.1 | sugar ABC transporter permease | - |
| EKI55_RS19040 () | 3728239..3729528 | - | 1290 | WP_001096090.1 | sugar ABC transporter permease | - |
| EKI55_RS19045 () | 3729531..3730763 | - | 1233 | WP_001239912.1 | maltose ABC transporter substrate-binding protein | - |
| EKI55_RS19050 () | 3731036..3731554 | + | 519 | Protein_3647 | porin | - |
| EKI55_RS19060 () | 3731613..3732307 | + | 695 | WP_085949012.1 | IS1 family transposase IS1N | Transposase |
| EKI55_RS19065 () | 3732323..3732847 | + | 525 | Protein_3649 | porin | - |
| EKI55_RS19070 () | 3732866..3733822 | + | 957 | WP_000490375.1 | hypothetical protein | VF |
| EKI55_RS19075 () | 3733913..3734401 | + | 489 | WP_001307257.1 | hypothetical protein | - |
| EKI55_RS19080 () | 3734484..3735611 | + | 1128 | WP_000741722.1 | hypothetical protein | VF |
| EKI55_RS19085 () | 3736018..3736827 | + | 810 | WP_000581608.1 | TrmB family transcriptional regulator | - |
| EKI55_RS19090 () | 3736916..3738784 | + | 1869 | WP_000575889.1 | glycoside hydrolase family 127 protein | - |
| EKI55_RS19095 () | 3738821..3741895 | + | 3075 | WP_000281530.1 | alpha-mannosidase | - |
| EKI55_RS19100 () | 3741984..3742955 | - | 972 | WP_000448381.1 | hypothetical protein | VF |
| EKI55_RS19105 () | 3743075..3744397 | - | 1323 | WP_001184054.1 | murein DD-endopeptidase MepM | - |
| EKI55_RS19110 () | 3744413..3745345 | - | 933 | WP_001300644.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| EKI55_RS19115 () | 3745424..3746179 | + | 756 | WP_000202996.1 | hypothetical protein | VF |
| EKI55_RS19120 () | 3746176..3746961 | + | 786 | WP_000571465.1 | hypothetical protein | VF |
| EKI55_RS19125 () | 3747108..3748118 | - | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | - |
| EKI55_RS19130 () | 3748127..3748738 | - | 612 | WP_000580328.1 | Holliday junction branch migration protein RuvA | - |
| EKI55_RS19135 () | 3748877..3748942 | - | 66 | WP_001386853.1 | stress response small protein YobI | - |
| EKI55_RS19140 () | 3749013..3749615 | + | 603 | WP_001024917.1 | YebB family permuted papain-like enzyme | - |
| EKI55_RS19145 () | 3749617..3750138 | - | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| EKI55_RS19150 () | 3750173..3750913 | - | 741 | WP_000907234.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| EKI55_RS19155 () | 3750942..3751394 | - | 453 | WP_001300367.1 | dihydroneopterin triphosphate diphosphatase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|