MGE detailed information
MGE type: Conjugative plasmid MGE length: 108366 bp
Accession: NZ_CP037904 Location: 1..108366 Organism: Escherichia coli strain LHM10-1 Replicon: plasmid unnamed1
Accession: NZ_CP037904 Location: 1..108366 Organism: Escherichia coli strain LHM10-1 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E1J55_RS23235 () | 1..978 | + | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
| E1J55_RS23240 () | 1263..2003 | - | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| E1J55_RS23245 () | 2124..2291 | - | 168 | WP_063078056.1 | hypothetical protein | - |
| E1J55_RS23250 () | 2406..2816 | - | 411 | Protein_3 | IS3 family transposase ISEhe3 | Transposase |
| E1J55_RS23255 () | 2879..3583 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| E1J55_RS23265 () | 3645..3884 | + | 240 | WP_011264039.1 | macrolide transporter | - |
| E1J55_RS23270 () | 4030..4893 | + | 864 | WP_000612791.1 | SDR family oxidoreductase | - |
| E1J55_RS23275 () | 5027..5731 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| E1J55_RS23285 () | 5853..6758 | + | 906 | WP_000219391.1 | hypothetical protein | ARG |
| E1J55_RS23290 () | 6755..7993 | + | 1239 | WP_000004159.1 | MFS transporter | - |
| E1J55_RS23295 () | 7993..8577 | + | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| E1J55_RS23310 () | 9070..9336 | - | 267 | Protein_11 | DDE-type integrase/transposase/recombinase | - |
| E1J55_RS23315 () | 9400..10104 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| E1J55_RS23320 () | 10156..10587 | + | 432 | Protein_13 | conjugal transfer protein | - |
| E1J55_RS23325 () | 10832..10948 | + | 117 | WP_001814923.1 | tetracycline resistance determinant leader peptide | - |
| E1J55_RS23330 () | 10964..12883 | + | 1920 | WP_025989258.1 | Tetracycline resistance protein TetM from transposon TnFO1 | VF |
| E1J55_RS23335 () | 12942..13304 | + | 363 | Protein_16 | IS5 family transposase ISPrst3 | Transposase |
| E1J55_RS23340 () | 13333..16299 | - | 2967 | WP_136698660.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| E1J55_RS23345 () | 16302..16862 | - | 561 | WP_000147567.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| E1J55_RS23350 () | 16944..17648 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| E1J55_RS23355 () | 18055..18711 | + | 657 | WP_001516695.1 | Pentapeptide repeat protein | ARG |
| E1J55_RS23365 () | 19036..20427 | - | 1392 | WP_001493761.1 | ISKra4 family transposase ISKpn19 | Transposase |
| E1J55_RS23370 () | 20464..21036 | - | 573 | WP_001493762.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| E1J55_RS23375 () | 21173..21763 | - | 591 | WP_012477564.1 | plasmid pRiA4b ORF-3 family protein | - |
| E1J55_RS23380 () | 21870..22574 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| E1J55_RS23390 () | 23261..23569 | + | 309 | Protein_25 | hypothetical protein | Relaxase |
| E1J55_RS23400 () | 23713..24927 | - | 1215 | WP_058657119.1 | Bicyclomycin resistance protein | ARG |
| E1J55_RS25485 () | 25144..25590 | - | 447 | Protein_27 | DUF3363 domain-containing protein | - |
| E1J55_RS23410 () | 26059..26514 | - | 456 | Protein_28 | transposase | - |
| E1J55_RS23415 () | 26563..26820 | - | 258 | Protein_29 | replication protein C | - |
| E1J55_RS23425 () | 26874..27578 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| E1J55_RS23430 () | 27639..27785 | - | 147 | Protein_31 | phage integrase N-terminal SAM-like domain-containing protein | - |
| E1J55_RS23435 () | 27934..28725 | + | 792 | WP_024198294.1 | Streptomycin 3''-adenylyltransferase | ARG |
| E1J55_RS23440 () | 28892..29791 | + | 900 | WP_000131886.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| E1J55_RS23445 () | 29998..30318 | + | 321 | WP_000535481.1 | co-chaperone GroES | - |
| E1J55_RS23450 () | 30374..32011 | + | 1638 | WP_000719078.1 | 60 kDa chaperonin | VF |
| E1J55_RS23455 () | 32200..33729 | + | 1530 | WP_001137772.1 | IS91 family transposase ISVsa3 | Transposase |
| E1J55_RS23465 () | 33997..34605 | + | 609 | Protein_37 | IS256 family transposase ISEc58 | Transposase |
| E1J55_RS23470 () | 34670..35374 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| E1J55_RS23475 () | 35427..35819 | - | 393 | Protein_39 | ISKra4 family transposase ISKpn19 | Transposase |
| E1J55_RS23480 () | 35906..37477 | - | 1572 | WP_094307857.1 | putative ABC transporter ATP-binding protein YheS | VF |
| E1J55_RS23485 () | 37941..38645 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| E1J55_RS23495 () | 38776..38994 | + | 219 | Protein_42 | IS1 family transposase | - |
| E1J55_RS25405 () | 39026..39241 | - | 216 | WP_061583825.1 | hypothetical protein | - |
| E1J55_RS23510 () | 39943..40800 | - | 858 | WP_039002220.1 | incFII family plasmid replication initiator RepA | - |
| E1J55_RS23515 () | 40793..40867 | - | 75 | WP_061357229.1 | RepA leader peptide Tap | - |
| E1J55_RS23525 () | 41099..41356 | - | 258 | WP_001541895.1 | replication regulatory protein RepA | - |
| E1J55_RS23530 () | 41624..41830 | - | 207 | WP_001351576.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 41817..41878 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 41817..41878 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 41817..41878 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 41817..41878 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| E1J55_RS23540 () | 42220..42432 | - | 213 | WP_001541896.1 | ANR family transcriptional regulator | - |
| E1J55_RS23545 () | 42567..43127 | - | 561 | WP_000139310.1 | fertility inhibition protein FinO | - |
| E1J55_RS23550 () | 43182..43925 | - | 744 | WP_039002216.1 | conjugal transfer pilus acetylase TraX | - |
| E1J55_RS23555 () | 43945..49215 | - | 5271 | WP_054377139.1 | Multifunctional conjugation protein TraI | Relaxase |
| E1J55_RS23560 () | 49215..51386 | - | 2172 | WP_106737422.1 | type IV conjugative transfer system coupling protein TraD | - |
| E1J55_RS23565 () | 51639..52370 | - | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| E1J55_RS23570 () | 52402..52905 | - | 504 | WP_000605510.1 | hypothetical protein | - |
| E1J55_RS23575 () | 52920..55742 | - | 2823 | WP_001007048.1 | conjugal transfer mating pair stabilization protein TraG | - |
| E1J55_RS23580 () | 55739..57112 | - | 1374 | WP_170926237.1 | conjugal transfer protein TraH | - |
| E1J55_RS23585 () | 57112..57474 | - | 363 | WP_001443292.1 | P-type conjugative transfer protein TrbJ | - |
| E1J55_RS23590 () | 57404..57949 | - | 546 | WP_000052613.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| E1J55_RS23595 () | 57936..58217 | - | 282 | WP_039002206.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| E1J55_RS23600 () | 58333..59076 | - | 744 | WP_039002205.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| E1J55_RS23605 () | 59069..59329 | - | 261 | WP_000864348.1 | conjugal transfer protein TrbE | - |
| E1J55_RS23610 () | 59356..61164 | - | 1809 | WP_000821844.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| E1J55_RS23615 () | 61161..61799 | - | 639 | WP_000777691.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| E1J55_RS23620 () | 61808..62800 | - | 993 | WP_023148235.1 | conjugal transfer pilus assembly protein TraU | - |
| E1J55_RS23625 () | 62797..63429 | - | 633 | WP_001749440.1 | type-F conjugative transfer system protein TraW | - |
| E1J55_RS23630 () | 63426..63812 | - | 387 | WP_039002198.1 | type-F conjugative transfer system protein TrbI | - |
| E1J55_RS23635 () | 63809..66436 | - | 2628 | WP_001064265.1 | type IV secretion system protein TraC | - |
| E1J55_RS23640 () | 66596..66817 | - | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| E1J55_RS23645 () | 66952..67467 | - | 516 | WP_000724019.1 | type IV conjugative transfer system lipoprotein TraV | - |
| E1J55_RS23650 () | 67464..67832 | - | 369 | WP_077254276.1 | conjugal transfer protein TrbD | - |
| E1J55_RS23655 () | 67771..68358 | - | 588 | WP_000002772.1 | conjugal transfer protein TraP | - |
| E1J55_RS23660 () | 68348..69775 | - | 1428 | WP_000146690.1 | conjugal transfer protein TraB | - |
| E1J55_RS23665 () | 69775..70479 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| E1J55_RS23670 () | 70490..71056 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| E1J55_RS23675 () | 71078..71389 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| E1J55_RS23680 () | 71394..71756 | - | 363 | WP_000994784.1 | type IV conjugative transfer system pilin TraA | - |
| E1J55_RS23685 () | 71789..72184 | - | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| E1J55_RS23690 () | 72283..72972 | - | 690 | WP_039002187.1 | conjugal transfer transcriptional regulator TraJ | - |
| E1J55_RS23695 () | 73159..73542 | - | 384 | WP_001151524.1 | relaxosome protein TraM | - |
| E1J55_RS23700 () | 73863..74465 | + | 603 | WP_000243712.1 | hypothetical protein | VF |
| E1J55_RS23705 () | 74762..75583 | - | 822 | WP_072795862.1 | DUF945 domain-containing protein | - |
| E1J55_RS23710 () | 75705..75992 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| E1J55_RS23730 () | 76914..77072 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 77116..77340 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 77116..77340 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 77116..77340 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 77116..77340 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| E1J55_RS25410 () | 77152..77340 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| E1J55_RS23735 () | 77352..78071 | - | 720 | WP_001276232.1 | plasmid SOS inhibition protein A | - |
| E1J55_RS23740 () | 78068..78502 | - | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| E1J55_RS23745 () | 78557..80515 | - | 1959 | WP_039000998.1 | ParB/RepB/Spo0J family partition protein | - |
| E1J55_RS23750 () | 80580..80813 | - | 234 | WP_000005987.1 | DUF905 family protein | - |
| E1J55_RS23755 () | 80870..81409 | - | 540 | WP_032332913.1 | single-stranded DNA-binding protein | - |
| E1J55_RS25490 () | 81435..81641 | - | 207 | WP_000275853.1 | hypothetical protein | - |
| E1J55_RS23780 () | 82261..82824 | - | 564 | WP_001315564.1 | class I SAM-dependent methyltransferase | - |
| E1J55_RS23785 () | 82872..84233 | - | 1362 | WP_038999961.1 | DUF3560 domain-containing protein | - |
| E1J55_RS23790 () | 84285..84515 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| E1J55_RS23800 () | 85550..85741 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| E1J55_RS23805 () | 85738..86160 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| E1J55_RS23810 () | 86207..86509 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| E1J55_RS23820 () | 87049..87825 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| E1J55_RS23825 () | 87876..88310 | - | 435 | WP_000274437.1 | DUF1380 family protein | - |
| E1J55_RS23830 () | 88324..88545 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| E1J55_RS23835 () | 88546..89229 | - | 684 | WP_000086185.1 | DNA methylase | - |
| E1J55_RS23840 () | 89306..89610 | - | 305 | Protein_101 | hypothetical protein | - |
| E1J55_RS23845 () | 89614..90516 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| E1J55_RS23855 () | 90934..91182 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| E1J55_RS23860 () | 91179..91616 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| E1J55_RS23865 () | 91616..92887 | + | 1272 | WP_000457518.1 | Y-family DNA polymerase | - |
| E1J55_RS23870 () | 92892..93284 | - | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| E1J55_RS23875 () | 93289..94260 | - | 972 | WP_001103690.1 | hypothetical protein | - |
| E1J55_RS23880 () | 94482..95126 | + | 645 | WP_000633913.1 | AAA family ATPase | - |
| E1J55_RS23885 () | 95120..95395 | + | 276 | WP_000239529.1 | hypothetical protein | - |
| E1J55_RS23890 () | 95547..96323 | - | 777 | Protein_110 | site-specific integrase | - |
| E1J55_RS23895 () | 96320..96751 | - | 432 | WP_001707302.1 | hypothetical protein | - |
| E1J55_RS23900 () | 96817..97521 | + | 705 | WP_065304467.1 | IS6 family transposase IS26 | Transposase |
| E1J55_RS23905 () | 97670..98995 | - | 1326 | WP_021512928.1 | pyridine nucleotide-disulfide oxidoreductase | - |
| E1J55_RS23910 () | 99105..99802 | + | 698 | Protein_114 | IS1 family transposase | - |
| E1J55_RS23915 () | 99903..100184 | - | 282 | WP_000639434.1 | hypothetical protein | - |
| E1J55_RS23920 () | 100286..101182 | - | 897 | Protein_116 | IS3 family transposase ISEhe3 | Transposase |
| E1J55_RS23925 () | 101247..102065 | + | 819 | Protein_117 | IS30 family transposase IS30D | Transposase |
| E1J55_RS23935 () | 103373..103549 | + | 177 | Protein_119 | IS30 family transposase IS30D | Transposase |
| E1J55_RS23945 () | 103974..104258 | - | 285 | WP_000642771.1 | hypothetical protein | - |
| E1J55_RS23950 () | 104278..105411 | - | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| E1J55_RS23955 () | 105477..106174 | - | 698 | Protein_122 | IS1 family transposase IS1G | Transposase |
| E1J55_RS23960 () | 106232..106480 | + | 249 | Protein_123 | abortive infection family protein | - |
| E1J55_RS23965 () | 106769..107581 | - | 813 | WP_032333019.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|