MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 93844 bp
Accession: NZ_CP037873 Location: 1..93844 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain PNCS014854 Replicon: plasmid PNCS014854 strain 4[5]12:i:-
Accession: NZ_CP037873 Location: 1..93844 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain PNCS014854 Replicon: plasmid PNCS014854 strain 4[5]12:i:-
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E1965_RS00005 () | 15..914 | - | 900 | WP_010999938.1 | YjiK family protein | - |
| E1965_RS00010 () | 911..1057 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| E1965_RS00015 () | 1047..1700 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| E1965_RS00020 () | 1945..2295 | - | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| E1965_RS00025 () | 2280..2492 | - | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| E1965_RS00030 () | 2924..3799 | - | 876 | WP_014343944.1 | hypothetical protein | - |
| E1965_RS00035 () | 4052..4609 | - | 558 | WP_010999940.1 | membrane protein | - |
| E1965_RS00040 () | 4624..5316 | - | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| E1965_RS00045 () | 5309..7717 | - | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| E1965_RS00050 () | 7945..8463 | - | 519 | WP_000748205.1 | major pilin PefA | - |
| E1965_RS00055 () | 8738..9040 | - | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| E1965_RS00060 () | 9759..10140 | + | 382 | Protein_11 | YgiW/YdeI family stress tolerance OB fold protein | - |
| E1965_RS00065 () | 10309..10753 | + | 445 | Protein_12 | site-specific integrase | - |
| E1965_RS00070 () | 11012..12001 | - | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| E1965_RS00075 () | 12495..12791 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| E1965_RS00080 () | 13275..13796 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| E1965_RS00085 () | 14472..14690 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| E1965_RS00090 () | 14692..14997 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| E1965_RS00095 () | 14999..15289 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| E1965_RS00100 () | 15286..15807 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| E1965_RS00105 () | 15842..16624 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| E1965_RS00110 () | 16633..17346 | + | 714 | Protein_21 | EAL domain-containing protein | - |
| E1965_RS00115 () | 17350..17859 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| E1965_RS00120 () | 17853..18338 | + | 486 | WP_000905606.1 | membrane protein | - |
| E1965_RS00125 () | 18615..18902 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| E1965_RS00130 () | 19058..19618 | + | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| E1965_RS00135 () | 19685..20035 | - | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| E1965_RS00140 () | 20092..20516 | + | 425 | Protein_27 | IS200/IS605 family transposase | - |
| E1965_RS00145 () | 20643..21293 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| E1965_RS00150 () | 21554..22279 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| E1965_RS00155 () | 22560..24335 | - | 1776 | WP_001676648.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| E1965_RS23860 () | 24387..24554 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| E1965_RS00160 () | 24517..25284 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| E1965_RS00165 () | 25458..25622 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| E1965_RS00170 () | 25796..26689 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| E1965_RS00175 () | 27298..28335 | + | 1038 | WP_001121399.1 | IS630 family transposase | - |
| E1965_RS00180 () | 28524..29549 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| E1965_RS00185 () | 29482..31146 | - | 1665 | WP_000098783.1 | IS481 family transposase | - |
| E1965_RS00190 () | 31130..31690 | - | 561 | WP_001240331.1 | recombinase family protein | - |
| E1965_RS00195 () | 31897..32637 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| E1965_RS00200 () | 33292..33780 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| E1965_RS00205 () | 34039..35154 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| E1965_RS00210 () | 35240..35656 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| E1965_RS00215 () | 35840..36175 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| E1965_RS00220 () | 36232..36798 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| E1965_RS00225 () | 36830..37771 | - | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| E1965_RS00230 () | 38186..39391 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| E1965_RS00235 () | 39391..40365 | + | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| E1965_RS00240 () | 40447..41721 | - | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| E1965_RS00245 () | 41721..42143 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| E1965_RS00250 () | 42654..43124 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| E1965_RS00255 () | 43117..43473 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| E1965_RS00260 () | 43855..44535 | + | 681 | WP_000088645.1 | DNA methylase | - |
| E1965_RS00265 () | 44535..44756 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| E1965_RS00270 () | 44812..45225 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| E1965_RS00275 () | 45297..46061 | + | 765 | WP_001246548.1 | membrane protein | - |
| E1965_RS00285 () | 46557..46991 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| E1965_RS00290 () | 47058..47492 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| E1965_RS00295 () | 47728..48051 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| E1965_RS00300 () | 48015..48170 | + | 156 | WP_001526868.1 | hypothetical protein | - |
| E1965_RS00305 () | 48764..49282 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| E1965_RS00310 () | 49337..49579 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| E1965_RS00315 () | 49648..51645 | + | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| E1965_RS00320 () | 51685..52119 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| E1965_RS00325 () | 52116..52853 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| E1965_RS23865 () | 53102..53260 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| E1965_RS23870 () | 53363..54181 | + | 819 | Protein_66 | DUF945 domain-containing protein | - |
| E1965_RS00340 () | 54492..54962 | - | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| E1965_RS00345 () | 55377..55757 | + | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| E1965_RS00350 () | 55950..56636 | + | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| E1965_RS00355 () | 56730..56957 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| E1965_RS00360 () | 56999..57361 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| E1965_RS00365 () | 57376..57687 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| E1965_RS00370 () | 57709..58275 | + | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| E1965_RS00375 () | 58262..59002 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| E1965_RS00380 () | 59002..60423 | + | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| E1965_RS00385 () | 60413..61009 | + | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| E1965_RS00390 () | 60987..61232 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| E1965_RS00395 () | 61229..61744 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| E1965_RS00400 () | 61879..62100 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| E1965_RS00405 () | 62093..62560 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| E1965_RS00410 () | 62677..62940 | + | 264 | WP_001239255.1 | hypothetical protein | - |
| E1965_RS00415 () | 62956..65604 | + | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| E1965_RS00420 () | 65579..65965 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| E1965_RS00425 () | 65962..66594 | + | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| E1965_RS00430 () | 66591..67583 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| E1965_RS00435 () | 67602..67910 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| E1965_RS00440 () | 67895..68533 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| E1965_RS00445 () | 68570..68989 | + | 420 | WP_001229397.1 | HNH endonuclease | - |
| E1965_RS00450 () | 68986..70812 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| E1965_RS00455 () | 70823..71038 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| E1965_RS00460 () | 71050..71799 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| E1965_RS00465 () | 72013..72306 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| E1965_RS00470 () | 72293..72841 | + | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| E1965_RS00475 () | 72831..74213 | + | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| E1965_RS00480 () | 74210..77032 | + | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| E1965_RS00485 () | 77048..77542 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| E1965_RS00490 () | 77578..78309 | + | 732 | WP_000782438.1 | complement resistance protein TraT | - |
| E1965_RS00495 () | 78686..80848 | + | 2163 | WP_000009318.1 | type IV conjugative transfer system coupling protein TraD | - |
| E1965_RS00500 () | 80857..81255 | - | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| E1965_RS00505 () | 81255..81482 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| E1965_RS00510 () | 81564..86822 | + | 5259 | WP_000986921.1 | conjugative transfer relaxase/helicase TraI | - |
| E1965_RS00515 () | 86842..87582 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| E1965_RS00520 () | 87637..88200 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| E1965_RS00525 () | 88315..88599 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| E1965_RS00530 () | 88612..88767 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| E1965_RS00535 () | 88933..89375 | + | 443 | Protein_106 | phospholipase | - |
| E1965_RS00540 () | 89554..89820 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| E1965_RS00545 () | 90070..90147 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| E1965_RS00550 () | 90128..91009 | + | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| E1965_RS00555 () | 91869..92090 | + | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| E1965_RS00560 () | 92187..92945 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| E1965_RS00565 () | 93212..93769 | - | 558 | WP_000725062.1 | complement resistance protein Rck | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|