MGE detailed information
MGE type: Conjugative plasmid MGE length: 74294 bp
Accession: NZ_CP035840 Location: 1..74294 Organism: Escherichia coli strain WS1933D Replicon: plasmid pWS1933D_74
Accession: NZ_CP035840 Location: 1..74294 Organism: Escherichia coli strain WS1933D Replicon: plasmid pWS1933D_74
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXA03_RS26070 (1094) | 1094..1357 | - | 264 | Protein_1 | transposase | - |
| EXA03_RS26075 (1295) | 1295..1447 | + | 153 | WP_001399803.1 | hypothetical protein | - |
| EXA03_RS26080 (1598) | 1598..2422 | + | 825 | WP_001238934.1 | conjugal transfer protein TraE | - |
| EXA03_RS26085 (2508) | 2508..3710 | + | 1203 | WP_000976355.1 | conjugal transfer protein TraF | - |
| EXA03_RS26090 (3770) | 3770..4354 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| EXA03_RS26095 (4749) | 4749..5207 | + | 459 | WP_001079806.1 | hypothetical protein | VF |
| EXA03_RS26100 (5204) | 5204..6022 | + | 819 | WP_000646093.1 | hypothetical protein | VF |
| EXA03_RS26105 (6019) | 6019..7167 | + | 1149 | WP_001024968.1 | putative protein YggR | VF |
| EXA03_RS26110 (7164) | 7164..7454 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| EXA03_RS26115 (7469) | 7469..8020 | + | 552 | WP_000014585.1 | Phospholipase D | VF |
| EXA03_RS26120 (8110) | 8110..11877 | + | 3768 | WP_001141524.1 | DUF5710 domain-containing protein | - |
| EXA03_RS26125 (11895) | 11895..12242 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| EXA03_RS26130 (12239) | 12239..12931 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| EXA03_RS26135 (12942) | 12942..13925 | + | 984 | WP_001191880.1 | hypothetical protein | VF |
| EXA03_RS26140 (13928) | 13928..15217 | + | 1290 | WP_001271993.1 | conjugal transfer protein TraO | - |
| EXA03_RS26145 (15217) | 15217..15921 | + | 705 | WP_001295718.1 | IncI1-type conjugal transfer protein TraP | - |
| EXA03_RS26150 (15921) | 15921..16448 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| EXA03_RS26155 (16499) | 16499..16903 | + | 405 | WP_000086957.1 | IncI1-type conjugal transfer protein TraR | - |
| EXA03_RS26160 (16967) | 16967..17155 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| EXA03_RS26165 (17139) | 17139..17855 | + | 717 | Protein_20 | IncI1-type conjugal transfer protein TraT | - |
| EXA03_RS26170 (17922) | 17922..18704 | - | 783 | WP_001317493.1 | IS21 family transposase IS100kyp | Transposase |
| EXA03_RS26175 (18701) | 18701..19723 | - | 1023 | WP_001295213.1 | IS21 family transposase IS100kyp | Transposase |
| EXA03_RS26180 (19809) | 19809..19898 | + | 90 | Protein_23 | conjugal transfer protein TraT | - |
| EXA03_RS26185 (19988) | 19988..23032 | + | 3045 | WP_001024771.1 | IncI1-type conjugal transfer protein TraU | - |
| EXA03_RS26190 (23032) | 23032..23646 | + | 615 | WP_032174792.1 | IncI1-type conjugal transfer protein TraV | - |
| EXA03_RS26195 (23613) | 23613..24815 | + | 1203 | WP_001189157.1 | IncI1-type conjugal transfer protein TraW | - |
| EXA03_RS26200 (24844) | 24844..25428 | + | 585 | WP_001037992.1 | IncI1-type conjugal transfer protein TraX | - |
| EXA03_RS26205 (25525) | 25525..27693 | + | 2169 | WP_000698356.1 | DotA/TraY family protein | - |
| EXA03_RS26210 (27764) | 27764..28426 | + | 663 | WP_000644795.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| EXA03_RS26215 (28498) | 28498..28707 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| EXA03_RS26220 (29109) | 29109..29285 | + | 177 | WP_001054898.1 | hypothetical protein | - |
| EXA03_RS26225 (29350) | 29350..29646 | - | 297 | WP_001275298.1 | DinQ-like type I toxin DqlB | - |
| EXA03_RS26230 (29946) | 29946..30197 | + | 252 | WP_001291965.1 | hypothetical protein | - |
| EXA03_RS26235 (30269) | 30269..30421 | - | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| - (30471) | 30471..30533 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (30471) | 30471..30533 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (30471) | 30471..30533 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (30471) | 30471..30533 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| EXA03_RS26240 (30742) | 30742..31827 | + | 1086 | WP_000080544.1 | hypothetical protein | - |
| - (31897) | 31897..31955 | + | 59 | NuclAT_1 | - | - |
| - (31897) | 31897..31955 | + | 59 | NuclAT_1 | - | - |
| - (31897) | 31897..31955 | + | 59 | NuclAT_1 | - | - |
| - (31897) | 31897..31955 | + | 59 | NuclAT_1 | - | - |
| EXA03_RS26245 (32135) | 32135..33343 | + | 1209 | WP_001295719.1 | IncI1-type conjugal transfer protein TrbA | - |
| EXA03_RS26250 (33362) | 33362..34432 | + | 1071 | WP_000151590.1 | IncI1-type conjugal transfer protein TrbB | - |
| EXA03_RS26255 (34425) | 34425..36716 | + | 2292 | WP_096842292.1 | F-type conjugative transfer protein TrbC | - |
| EXA03_RS26260 (36788) | 36788..37606 | - | 819 | WP_000106194.1 | DUF2971 domain-containing protein | - |
| EXA03_RS26265 (37728) | 37728..40430 | - | 2703 | WP_024190603.1 | Protein TraI | Relaxase |
| EXA03_RS26270 (40441) | 40441..40773 | - | 333 | WP_001281051.1 | plasmid mobilization protein MobA | - |
| EXA03_RS26275 (41006) | 41006..41341 | + | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| EXA03_RS26280 (41427) | 41427..42275 | - | 849 | WP_001077031.1 | DUF4942 domain-containing protein | - |
| EXA03_RS26285 (42519) | 42519..42695 | + | 177 | WP_164721506.1 | hypothetical protein | - |
| EXA03_RS26290 (42855) | 42855..43106 | + | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| EXA03_RS26295 (43137) | 43137..43394 | - | 258 | WP_015056422.1 | hypothetical protein | VF |
| EXA03_RS26300 (43394) | 43394..44320 | - | 927 | WP_000038335.1 | Recombination-promoting nuclease RpnA | VF |
| EXA03_RS26305 (44385) | 44385..44651 | - | 267 | WP_001247862.1 | hypothetical protein | - |
| EXA03_RS26310 (44745) | 44745..45179 | - | 435 | WP_000218858.1 | hypothetical protein | - |
| EXA03_RS26315 (45910) | 45910..46410 | - | 501 | WP_000117614.1 | antirestriction protein ArdA | - |
| EXA03_RS26320 (46822) | 46822..47598 | - | 777 | WP_001005040.1 | hypothetical protein | - |
| EXA03_RS26325 (47644) | 47644..48078 | - | 435 | WP_000274494.1 | DUF1380 family protein | - |
| EXA03_RS26330 (48092) | 48092..48313 | - | 222 | WP_001104880.1 | hypothetical protein | - |
| EXA03_RS26335 (48314) | 48314..48997 | - | 684 | WP_000086129.1 | DNA methylase | - |
| EXA03_RS26340 (49073) | 49073..49384 | - | 312 | WP_021018648.1 | hypothetical protein | - |
| EXA03_RS26345 (49381) | 49381..50283 | - | 903 | WP_077628965.1 | DUF1281 domain-containing protein | - |
| EXA03_RS26350 (50701) | 50701..50949 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| EXA03_RS26355 (50946) | 50946..51383 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| EXA03_RS26360 (51383) | 51383..52654 | + | 1272 | WP_000457506.1 | Y-family DNA polymerase | - |
| EXA03_RS26365 (52842) | 52842..53468 | + | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| EXA03_RS26370 (53465) | 53465..53767 | + | 303 | WP_001245884.1 | hypothetical protein | - |
| EXA03_RS26375 (54270) | 54270..55616 | - | 1347 | WP_001132022.1 | protein YagA | - |
| EXA03_RS26380 (55970) | 55970..56572 | + | 603 | WP_000517694.1 | ProQ/FINO family protein | - |
| EXA03_RS26385 (56710) | 56710..56976 | + | 267 | WP_000627831.1 | hypothetical protein | - |
| EXA03_RS26390 (57245) | 57245..57448 | - | 204 | Protein_65 | hypothetical protein | - |
| EXA03_RS26395 (57554) | 57554..57829 | - | 276 | WP_000421261.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| EXA03_RS26400 (57829) | 57829..58113 | - | 285 | WP_001297026.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| EXA03_RS26405 (59021) | 59021..60052 | - | 1032 | WP_000907882.1 | plasmid replication initiator RepA | - |
| EXA03_RS26410 (60890) | 60890..61396 | + | 507 | WP_001317510.1 | transcription termination/antitermination NusG family protein | - |
| EXA03_RS26415 (61537) | 61537..61947 | + | 411 | WP_253208150.1 | hypothetical protein | - |
| EXA03_RS26770 (63893) | 63893..64039 | + | 147 | WP_235777688.1 | PilI type IV pilus biogenesis protein | - |
| EXA03_RS26430 (64155) | 64155..64490 | + | 336 | WP_024168261.1 | hypothetical protein | - |
| EXA03_RS26435 (64717) | 64717..65787 | + | 1071 | WP_000730432.1 | hypothetical protein | VF |
| EXA03_RS26440 (65791) | 65791..66228 | + | 438 | WP_000539951.1 | hypothetical protein | VF |
| EXA03_RS26445 (66260) | 66260..67879 | + | 1620 | WP_001035559.1 | Outer membrane lipoprotein BfpB | VF |
| EXA03_RS26450 (67900) | 67900..69195 | + | 1296 | WP_000129884.1 | type 4b pilus protein PilO2 | - |
| EXA03_RS26455 (69185) | 69185..69643 | + | 459 | WP_000095887.1 | hypothetical protein | VF |
| EXA03_RS26460 (69746) | 69746..71254 | + | 1509 | WP_000880806.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| EXA03_RS26465 (71256) | 71256..72350 | + | 1095 | WP_000697154.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| EXA03_RS26470 (72412) | 72412..72948 | + | 537 | WP_000111522.1 | hypothetical protein | VF |
| EXA03_RS26475 (72993) | 72993..73478 | + | 486 | WP_001080767.1 | hypothetical protein | VF |
| EXA03_RS26480 (73494) | 73494..74120 | + | 627 | WP_000939938.1 | prepilin peptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|