MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 88898 bp
Accession: NZ_CP035549 Location: 1..88898 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain YU07-18 Replicon: plasmid pYU07-18_89
Accession: NZ_CP035549 Location: 1..88898 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain YU07-18 Replicon: plasmid pYU07-18_89
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D6D39_RS24515 () | 166..1194 | - | 1029 | WP_001292231.1 | tyrosine-type recombinase/integrase | - |
| D6D39_RS25200 () | 1590..2627 | + | 1038 | WP_000039385.1 | hypothetical protein | - |
| D6D39_RS24525 () | 2655..4163 | - | 1509 | WP_000897062.1 | terminase | - |
| D6D39_RS24530 () | 4163..5143 | - | 981 | WP_001096838.1 | hypothetical protein | - |
| D6D39_RS24535 () | 5524..5916 | - | 393 | WP_000435256.1 | hypothetical protein | - |
| D6D39_RS25205 () | 6025..6417 | - | 393 | WP_001557741.1 | hypothetical protein | - |
| D6D39_RS25210 () | 6417..6992 | - | 576 | WP_000928280.1 | hypothetical protein | - |
| D6D39_RS24555 () | 7642..7806 | - | 165 | WP_000579539.1 | DUF3927 family protein | - |
| D6D39_RS24560 () | 7806..8240 | - | 435 | WP_000467090.1 | TerB family tellurite resistance protein | - |
| D6D39_RS24580 () | 10448..11656 | - | 1209 | WP_000077921.1 | hypothetical protein | - |
| D6D39_RS24585 () | 11770..12051 | - | 282 | WP_046891376.1 | hypothetical protein | - |
| D6D39_RS24590 () | 12281..12658 | - | 378 | WP_099145002.1 | VRR-NUC domain-containing protein | - |
| D6D39_RS24595 () | 12912..13172 | - | 261 | WP_001230915.1 | hypothetical protein | - |
| D6D39_RS24600 () | 13175..13609 | - | 435 | WP_000209223.1 | hypothetical protein | - |
| D6D39_RS24605 () | 13646..20482 | - | 6837 | WP_022630892.1 | DEAD/DEAH box helicase family protein | - |
| D6D39_RS24610 () | 20634..21119 | + | 486 | WP_001273800.1 | TIGR02594 family protein | - |
| D6D39_RS24615 () | 21151..21348 | - | 198 | WP_001548248.1 | hypothetical protein | - |
| D6D39_RS24620 () | 21348..22055 | - | 708 | WP_000350312.1 | Rha family transcriptional regulator | - |
| D6D39_RS24625 () | 22055..22279 | - | 225 | WP_000245715.1 | host cell division inhibitor Icd-like protein | - |
| D6D39_RS24630 () | 22693..23655 | - | 963 | WP_022630891.1 | hypothetical protein | - |
| D6D39_RS24635 () | 23856..24854 | - | 999 | WP_001557744.1 | hypothetical protein | - |
| D6D39_RS24640 () | 24868..26550 | - | 1683 | WP_000201469.1 | hypothetical protein | - |
| D6D39_RS24650 () | 26635..26967 | - | 333 | WP_001244352.1 | hypothetical protein | - |
| D6D39_RS24655 () | 27012..27569 | - | 558 | WP_000094097.1 | DUF4145 domain-containing protein | - |
| D6D39_RS24660 () | 27695..29059 | - | 1365 | WP_001043715.1 | hypothetical protein | - |
| D6D39_RS24665 () | 29154..29522 | - | 369 | WP_000156172.1 | hypothetical protein | - |
| D6D39_RS24670 () | 29522..31489 | - | 1968 | WP_022630890.1 | hypothetical protein | - |
| D6D39_RS24675 () | 31482..32102 | - | 621 | WP_000066531.1 | hypothetical protein | - |
| D6D39_RS24680 () | 32092..32538 | - | 447 | WP_000526264.1 | hypothetical protein | - |
| D6D39_RS24685 () | 32538..32864 | - | 327 | WP_000457140.1 | holin | - |
| D6D39_RS24690 () | 32970..33530 | + | 561 | WP_000904917.1 | recombinase family protein | - |
| D6D39_RS25215 () | 33667..34264 | + | 598 | Protein_32 | phage tail protein | - |
| D6D39_RS24700 () | 34284..34792 | + | 509 | Protein_33 | tail fiber assembly protein | - |
| D6D39_RS24705 () | 34797..35401 | - | 605 | Protein_34 | tail fiber assembly protein | - |
| D6D39_RS24710 () | 35335..37440 | - | 2106 | Protein_35 | tail fiber protein | - |
| D6D39_RS25220 () | 37443..37889 | - | 447 | WP_000829713.1 | hypothetical protein | - |
| D6D39_RS24720 () | 37984..38829 | - | 846 | WP_000654652.1 | hypothetical protein | - |
| D6D39_RS24725 () | 38840..40270 | - | 1431 | WP_000156306.1 | hypothetical protein | - |
| D6D39_RS24730 () | 40267..40641 | - | 375 | WP_000965099.1 | hypothetical protein | - |
| D6D39_RS24735 () | 40647..44429 | - | 3783 | WP_022630908.1 | structural injection transglycosylase | - |
| D6D39_RS24740 () | 44444..45265 | - | 822 | WP_001025043.1 | hypothetical protein | - |
| D6D39_RS24745 () | 45654..46409 | + | 756 | WP_001077897.1 | RepB family plasmid replication initiator protein | - |
| D6D39_RS24750 () | 46791..47498 | - | 708 | WP_000021878.1 | hypothetical protein | - |
| D6D39_RS24755 () | 47514..48065 | - | 552 | WP_000187859.1 | hypothetical protein | - |
| D6D39_RS24760 () | 48120..48611 | - | 492 | WP_000012433.1 | hypothetical protein | - |
| D6D39_RS24765 () | 48620..49192 | - | 573 | WP_001112722.1 | hypothetical protein | - |
| D6D39_RS24770 () | 49260..49994 | - | 735 | WP_000801017.1 | hypothetical protein | - |
| D6D39_RS24775 () | 50038..51696 | - | 1659 | WP_001033848.1 | tail sheath protein | - |
| D6D39_RS24780 () | 51764..52042 | - | 279 | WP_001396841.1 | Ig-like domain-containing protein | - |
| D6D39_RS24785 () | 52190..53887 | - | 1698 | WP_001038834.1 | hypothetical protein | - |
| D6D39_RS24790 () | 54133..54438 | + | 306 | WP_001427915.1 | hypothetical protein | - |
| D6D39_RS24795 () | 54455..54913 | + | 459 | WP_000020025.1 | hypothetical protein | - |
| D6D39_RS24800 () | 55067..55525 | - | 459 | WP_000243176.1 | hypothetical protein | - |
| D6D39_RS24805 () | 55596..56402 | - | 807 | WP_000887293.1 | hypothetical protein | - |
| D6D39_RS24810 () | 56402..56686 | - | 285 | WP_001272820.1 | hypothetical protein | - |
| D6D39_RS24815 () | 56953..57909 | + | 957 | WP_022630907.1 | recombinase | - |
| D6D39_RS24820 () | 57922..58260 | + | 339 | WP_000076908.1 | plasmid stabilization protein | - |
| D6D39_RS24825 () | 58548..59189 | + | 642 | WP_000585023.1 | AAA family ATPase | - |
| D6D39_RS24830 () | 59182..59469 | + | 288 | WP_000595051.1 | hypothetical protein | - |
| D6D39_RS24835 () | 59738..61399 | + | 1662 | WP_001287145.1 | glutamine--tRNA ligase | - |
| D6D39_RS24840 () | 61448..62353 | - | 906 | WP_000045489.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| D6D39_RS24845 () | 62346..63026 | - | 681 | WP_000812238.1 | hypothetical protein | - |
| D6D39_RS24850 () | 63010..63915 | - | 906 | WP_001258018.1 | recombination-associated protein RdgC | - |
| D6D39_RS24855 () | 63975..64628 | - | 654 | WP_000828868.1 | hypothetical protein | - |
| D6D39_RS24860 () | 64625..65605 | - | 981 | WP_000046500.1 | hypothetical protein | - |
| D6D39_RS24865 () | 65609..66376 | - | 768 | WP_000203293.1 | hypothetical protein | - |
| D6D39_RS24870 () | 66373..67164 | - | 792 | WP_001557712.1 | hypothetical protein | - |
| D6D39_RS24875 () | 67327..67629 | + | 303 | WP_000162415.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| D6D39_RS24880 () | 67700..68038 | + | 339 | WP_000806445.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| D6D39_RS24885 () | 68095..68454 | + | 360 | WP_022630906.1 | transcriptional regulator | - |
| D6D39_RS25225 () | 68516..69253 | + | 738 | WP_022630905.1 | hypothetical protein | - |
| D6D39_RS24895 () | 69287..70483 | - | 1197 | WP_022630904.1 | hypothetical protein | - |
| D6D39_RS24900 () | 70476..70805 | - | 330 | WP_000542383.1 | hypothetical protein | - |
| D6D39_RS24905 () | 71134..71787 | - | 654 | WP_001557715.1 | hypothetical protein | - |
| D6D39_RS24910 () | 72055..72966 | + | 912 | WP_024144056.1 | hypothetical protein | - |
| D6D39_RS24915 () | 73006..73356 | - | 351 | WP_000201621.1 | hypothetical protein | - |
| D6D39_RS24920 () | 73502..73786 | - | 285 | WP_022630902.1 | hypothetical protein | - |
| D6D39_RS24925 () | 73846..74772 | - | 927 | WP_022630901.1 | Rha family transcriptional regulator | - |
| D6D39_RS24930 () | 74772..75263 | - | 492 | Protein_79 | host cell division inhibitor Icd-like protein | - |
| D6D39_RS24935 () | 75300..75467 | - | 168 | WP_022630899.1 | hypothetical protein | - |
| D6D39_RS24940 () | 75799..76377 | - | 579 | WP_022630898.1 | recombinase | - |
| D6D39_RS24945 () | 76650..77261 | + | 612 | WP_000240858.1 | DUF4406 domain-containing protein | - |
| D6D39_RS24950 () | 77565..78053 | + | 489 | WP_000834211.1 | hypothetical protein | - |
| D6D39_RS24955 () | 78050..78298 | + | 249 | WP_000072161.1 | hypothetical protein | - |
| D6D39_RS24960 () | 78295..78603 | + | 309 | WP_001018053.1 | DUF4752 family protein | - |
| D6D39_RS24965 () | 78566..78790 | + | 225 | WP_000139729.1 | hypothetical protein | - |
| D6D39_RS24970 () | 78787..79098 | + | 312 | WP_000022451.1 | hypothetical protein | - |
| D6D39_RS24975 () | 79095..79787 | + | 693 | WP_000616788.1 | metallophosphoesterase | - |
| D6D39_RS24980 () | 79886..80881 | + | 996 | WP_046891371.1 | DUF968 domain-containing protein | - |
| D6D39_RS24985 () | 80895..81194 | + | 300 | WP_046891370.1 | hypothetical protein | - |
| D6D39_RS24990 () | 81181..81828 | + | 648 | WP_000034256.1 | ead/Ea22-like family protein | - |
| D6D39_RS24995 () | 81815..82006 | + | 192 | WP_001557730.1 | hypothetical protein | - |
| D6D39_RS25000 () | 82008..82223 | + | 216 | WP_001557731.1 | hypothetical protein | - |
| D6D39_RS25005 () | 82225..82680 | + | 456 | WP_001142594.1 | DUF4014 family protein | - |
| D6D39_RS25010 () | 82691..83407 | + | 717 | Protein_95 | DUF551 domain-containing protein | - |
| D6D39_RS25015 () | 83753..84027 | + | 275 | Protein_96 | antitoxin PHD | - |
| D6D39_RS25020 () | 84012..84221 | - | 210 | WP_001344848.1 | hypothetical protein | - |
| D6D39_RS25025 () | 84395..84541 | + | 147 | WP_001443773.1 | hypothetical protein | - |
| D6D39_RS25030 () | 84553..84942 | + | 390 | WP_022630896.1 | DNA repair protein | - |
| D6D39_RS25035 () | 85077..85499 | + | 423 | WP_000098854.1 | hypothetical protein | - |
| D6D39_RS25040 () | 85608..85829 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| D6D39_RS25045 () | 85829..86209 | + | 381 | WP_001216038.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| D6D39_RS25050 () | 86214..86411 | + | 198 | WP_000113017.1 | hypothetical protein | - |
| D6D39_RS25055 () | 86444..87220 | - | 777 | WP_022630895.1 | hypothetical protein | - |
| D6D39_RS25060 () | 87227..87667 | - | 441 | WP_001557736.1 | DUF2829 domain-containing protein | - |
| D6D39_RS25065 () | 87682..88176 | - | 495 | WP_001557737.1 | dUTP diphosphatase | - |
| D6D39_RS25070 () | 88173..88649 | - | 477 | WP_001557738.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|