MGE detailed information
MGE type: Conjugative plasmid MGE length: 69518 bp
Accession: NZ_CP035470 Location: 1..69518 Organism: Escherichia coli strain U12A Replicon: plasmid pU12A_C
Accession: NZ_CP035470 Location: 1..69518 Organism: Escherichia coli strain U12A Replicon: plasmid pU12A_C
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U12A_RS01625 () | 1666..2412 | + | 747 | WP_000205731.1 | conjugal transfer pilus acetylase TraX | - |
| U12A_RS01630 () | 2471..3331 | + | 861 | WP_000704518.1 | putative protein YcjY | VF |
| U12A_RS01635 () | 3434..3994 | + | 561 | WP_000139323.1 | fertility inhibition protein FinO | - |
| U12A_RS01640 () | 4123..4335 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| U12A_RS01645 () | 4580..5041 | + | 462 | WP_001233842.1 | thermonuclease family protein | - |
| U12A_RS01650 () | 5087..5296 | + | 210 | WP_001333231.1 | hemolysin expression modulator Hha | - |
| U12A_RS01655 () | 5334..5924 | + | 591 | WP_000766808.1 | DUF2726 domain-containing protein | - |
| U12A_RS01660 () | 6164..6421 | + | 258 | WP_000083826.1 | replication regulatory protein RepA | - |
| U12A_RS01670 () | 6656..6730 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| U12A_RS01675 () | 6723..7580 | + | 858 | WP_001673237.1 | incFII family plasmid replication initiator RepA | - |
| U12A_RS01695 () | 8650..8913 | + | 264 | WP_001089473.1 | hypothetical protein | - |
| U12A_RS01700 () | 8903..9202 | + | 300 | WP_001528606.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| U12A_RS01705 () | 9238..9903 | - | 666 | WP_001535733.1 | hypothetical protein | - |
| U12A_RS01710 () | 10473..11036 | - | 564 | WP_000351266.1 | pentapeptide repeat-containing protein | - |
| U12A_RS01715 () | 11040..11771 | - | 732 | WP_000155032.1 | ATP-binding cassette domain-containing protein | - |
| U12A_RS01720 () | 11768..12493 | - | 726 | WP_000258040.1 | microcin B17 immunity protein McbE | - |
| U12A_RS01725 () | 12503..13693 | - | 1191 | WP_000611492.1 | YcaO-like family protein | - |
| U12A_RS01730 () | 13674..14492 | - | 819 | WP_001528601.1 | SagB/ThcOx family dehydrogenase | - |
| U12A_RS01735 () | 14494..15381 | - | 888 | WP_000243884.1 | McbB family protein | - |
| U12A_RS01740 () | 15408..15617 | - | 210 | WP_001535752.1 | microcin B17 | - |
| U12A_RS01745 () | 16147..16599 | + | 453 | WP_000670962.1 | N-acetyltransferase | - |
| U12A_RS01755 () | 17002..17352 | - | 351 | WP_001365718.1 | plasmid partitioning/stability family protein | - |
| U12A_RS01760 () | 17355..18317 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| U12A_RS01765 () | 18852..19754 | + | 903 | WP_001386431.1 | DUF1281 domain-containing protein | - |
| U12A_RS01770 () | 19751..20062 | + | 312 | WP_032144809.1 | hypothetical protein | - |
| U12A_RS01775 () | 20139..20822 | + | 684 | WP_000085885.1 | DNA methylase | - |
| U12A_RS01780 () | 20823..21044 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| U12A_RS01785 () | 21058..21492 | + | 435 | WP_000274447.1 | DUF1380 family protein | - |
| U12A_RS01790 () | 21537..22307 | + | 771 | WP_001006242.1 | hypothetical protein | - |
| U12A_RS01805 () | 22846..23148 | + | 303 | WP_072257078.1 | antirestriction protein | - |
| U12A_RS01810 () | 23195..23617 | + | 423 | WP_000271722.1 | DUF1380 family protein | - |
| U12A_RS01815 () | 23614..23805 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| U12A_RS01830 () | 24859..25089 | + | 231 | WP_042207204.1 | hypothetical protein | - |
| U12A_RS01835 () | 25141..26502 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| U12A_RS01840 () | 26549..27112 | + | 564 | WP_001311069.1 | class I SAM-dependent methyltransferase | - |
| U12A_RS01865 () | 27991..28530 | + | 540 | WP_001530505.1 | single-stranded DNA-binding protein | - |
| U12A_RS01870 () | 28592..28825 | + | 234 | WP_000006030.1 | DUF905 family protein | - |
| U12A_RS01875 () | 28890..30848 | + | 1959 | WP_000117213.1 | ParB/RepB/Spo0J family partition protein | - |
| U12A_RS01880 () | 30903..31337 | + | 435 | WP_000845910.1 | conjugation system SOS inhibitor PsiB | - |
| U12A_RS01885 () | 31334..32053 | + | 720 | WP_001276234.1 | plasmid SOS inhibition protein A | - |
| U12A_RS27490 () | 32065..32253 | - | 189 | WP_001336239.1 | hypothetical protein | - |
| - () | 32065..32289 | + | 225 | NuclAT_0 | - | - |
| - () | 32065..32289 | + | 225 | NuclAT_0 | - | - |
| - () | 32065..32289 | + | 225 | NuclAT_0 | - | - |
| - () | 32065..32289 | + | 225 | NuclAT_0 | - | - |
| - () | 32222..32287 | + | 66 | - | - | Antitoxin Detail |
| U12A_RS01890 () | 32333..32491 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| U12A_RS01905 () | 33418..33705 | + | 288 | WP_000107526.1 | hypothetical protein | - |
| U12A_RS01910 () | 33824..34645 | + | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| U12A_RS01920 () | 34940..35542 | - | 603 | WP_023908348.1 | hypothetical protein | VF |
| U12A_RS01930 () | 35865..36248 | + | 384 | WP_001354030.1 | relaxosome protein TraM | - |
| U12A_RS01935 () | 36442..37113 | + | 672 | WP_000283561.1 | conjugal transfer transcriptional regulator TraJ | - |
| U12A_RS01940 () | 37250..37477 | + | 228 | WP_000089263.1 | conjugal transfer relaxosome protein TraY | - |
| U12A_RS01945 () | 37510..37869 | + | 360 | WP_016239104.1 | type IV conjugative transfer system pilin TraA | - |
| U12A_RS01950 () | 37884..38195 | + | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| U12A_RS01955 () | 38217..38783 | + | 567 | WP_016239103.1 | type IV conjugative transfer system protein TraE | - |
| U12A_RS01960 () | 38770..39498 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| U12A_RS01965 () | 39498..40949 | + | 1452 | WP_016239102.1 | conjugal transfer protein TraB | - |
| U12A_RS01970 () | 40918..41505 | + | 588 | WP_001309238.1 | conjugal transfer protein TraP | - |
| U12A_RS01975 () | 41459..41809 | + | 351 | WP_071586941.1 | conjugal transfer protein TrbD | - |
| U12A_RS01980 () | 41809..42324 | + | 516 | WP_000809872.1 | type IV conjugative transfer system lipoprotein TraV | - |
| U12A_RS01985 () | 42459..42680 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| U12A_RS01990 () | 42673..43086 | + | 414 | WP_000549589.1 | hypothetical protein | - |
| U12A_RS01995 () | 43079..43552 | + | 474 | WP_016249716.1 | hypothetical protein | - |
| U12A_RS02000 () | 43633..43851 | + | 219 | WP_000556751.1 | hypothetical protein | - |
| U12A_RS02005 () | 43879..44226 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| U12A_RS02010 () | 44352..46982 | + | 2631 | WP_049092012.1 | type IV secretion system protein TraC | - |
| U12A_RS02015 () | 46979..47365 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| U12A_RS02020 () | 47362..47994 | + | 633 | WP_001526032.1 | type-F conjugative transfer system protein TraW | - |
| U12A_RS02025 () | 47991..48983 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| U12A_RS02030 () | 49010..49306 | + | 297 | WP_042033120.1 | hypothetical protein | - |
| U12A_RS02035 () | 49382..49900 | + | 519 | WP_000009087.1 | hypothetical protein | - |
| U12A_RS27705 () | 49927..50016 | + | 90 | Protein_68 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| U12A_RS02040 () | 50108..50287 | + | 180 | WP_001750891.1 | hypothetical protein | - |
| U12A_RS02050 () | 50716..51354 | + | 639 | WP_001035183.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| U12A_RS02055 () | 51351..51722 | + | 372 | WP_000056340.1 | hypothetical protein | - |
| U12A_RS02060 () | 51747..52169 | + | 423 | WP_001229306.1 | HNH endonuclease | - |
| U12A_RS02065 () | 52166..54016 | + | 1851 | WP_001570866.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| U12A_RS02070 () | 54043..54300 | + | 258 | WP_000864309.1 | conjugal transfer protein TrbE | - |
| U12A_RS02075 () | 54293..55036 | + | 744 | WP_001030385.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| U12A_RS02080 () | 55050..55391 | + | 342 | WP_000556795.1 | conjugal transfer protein TrbA | - |
| U12A_RS02085 () | 55372..55707 | - | 336 | WP_000736414.1 | hypothetical protein | - |
| U12A_RS02090 () | 55788..56072 | + | 285 | WP_000624107.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| U12A_RS02095 () | 56059..56604 | + | 546 | WP_000059830.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| U12A_RS02100 () | 56534..56881 | + | 348 | WP_051788537.1 | P-type conjugative transfer protein TrbJ | - |
| U12A_RS02105 () | 56829..57254 | + | 426 | WP_001323332.1 | F-type conjugal transfer protein TrbF | - |
| U12A_RS02110 () | 57241..58614 | + | 1374 | WP_000944331.1 | conjugal transfer protein TraH | - |
| U12A_RS02115 () | 58611..61436 | + | 2826 | WP_129481432.1 | conjugal transfer mating pair stabilization protein TraG | - |
| U12A_RS02120 () | 61433..61942 | + | 510 | WP_000628099.1 | conjugal transfer entry exclusion protein TraS | - |
| U12A_RS02125 () | 61956..62687 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| U12A_RS02130 () | 62890..63627 | + | 738 | WP_001673178.1 | hypothetical protein | - |
| U12A_RS02135 () | 63678..65894 | + | 2217 | WP_129481433.1 | type IV conjugative transfer system coupling protein TraD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|