MGE detailed information
MGE type: Genomic_island MGE length: 19745 bp
Accession: NZ_CP034931 Location: 3868683..3888427 Organism: Shigella flexneri strain 2013C-3749 Replicon: chromosome
Accession: NZ_CP034931 Location: 3868683..3888427 Organism: Shigella flexneri strain 2013C-3749 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EPD86_RS19835 (3864815) | 3864815..3865759 | + | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
| EPD86_RS19840 (3865756) | 3865756..3866589 | + | 834 | WP_001008973.1 | nickel ABC transporter permease subunit NikC | - |
| EPD86_RS19845 (3866589) | 3866589..3867353 | + | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| EPD86_RS19850 (3867350) | 3867350..3868156 | + | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| EPD86_RS19855 (3868162) | 3868162..3868563 | + | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| EPD86_RS19860 (3868683) | 3868683..3869042 | - | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| EPD86_RS19865 (3869039) | 3869039..3869314 | - | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| EPD86_RS19870 (3869373) | 3869373..3870497 | - | 1125 | WP_001216257.1 | ABC transporter permease | - |
| EPD86_RS19875 (3870497) | 3870497..3873232 | - | 2736 | WP_000149170.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| EPD86_RS19880 (3873229) | 3873229..3874296 | - | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| EPD86_RS25940 (3874359) | 3874359..3874472 | - | 114 | WP_001296785.1 | protein YhiY | - |
| EPD86_RS19885 (3874662) | 3874662..3876284 | - | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| EPD86_RS19890 (3876546) | 3876546..3878135 | - | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| EPD86_RS19895 (3878552) | 3878552..3879550 | + | 999 | Protein_3860 | DUF2776 domain-containing protein | - |
| EPD86_RS19900 (3879637) | 3879637..3880113 | - | 477 | WP_000182502.1 | hypothetical protein | - |
| EPD86_RS19905 (3880106) | 3880106..3880870 | - | 765 | WP_000442140.1 | winged helix-turn-helix domain-containing protein | - |
| EPD86_RS19910 (3881116) | 3881116..3881877 | + | 762 | Protein_3863 | Transcriptional regulatory protein RcsB | VF |
| EPD86_RS19915 (3881984) | 3881984..3882496 | - | 513 | WP_000751953.1 | hypothetical protein | - |
| EPD86_RS19920 (3882635) | 3882635..3883783 | - | 1149 | WP_005052604.1 | hypothetical protein | VF |
| EPD86_RS19925 (3883875) | 3883875..3885103 | + | 1229 | WP_167547300.1 | IS3 family transposase IS2 | Transposase |
| EPD86_RS19935 (3885342) | 3885342..3886421 | - | 1080 | WP_005052551.1 | hypothetical protein | VF |
| EPD86_RS19940 (3886465) | 3886465..3887226 | - | 762 | WP_005090407.1 | hypothetical protein | VF |
| EPD86_RS19945 (3887693) | 3887693..3888427 | - | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| EPD86_RS19950 (3888427) | 3888427..3889581 | - | 1155 | WP_232111812.1 | O-antigen ligase family protein | - |
| EPD86_RS19955 (3889717) | 3889717..3890009 | + | 293 | Protein_3871 | transposase | - |
| EPD86_RS19965 (3891253) | 3891253..3892452 | - | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.003 |