MGE detailed information
MGE type: Conjugative plasmid MGE length: 83424 bp
Accession: NZ_CP034804 Location: 1..83424 Organism: Escherichia coli strain 2009C-3554 Replicon: plasmid p2009C-3554-1
Accession: NZ_CP034804 Location: 1..83424 Organism: Escherichia coli strain 2009C-3554 Replicon: plasmid p2009C-3554-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A0I22_RS28085 () | 2568..3119 | - | 552 | WP_000014583.1 | Phospholipase D | VF |
| A0I22_RS28090 () | 3134..3424 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| A0I22_RS28095 () | 3421..4569 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| A0I22_RS28100 () | 4566..5384 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| A0I22_RS28105 () | 5381..5839 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| A0I22_RS28110 () | 6234..6818 | - | 585 | WP_000977520.1 | histidine phosphatase family protein | - |
| A0I22_RS28115 () | 6878..8080 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| A0I22_RS28120 () | 8166..8990 | - | 825 | WP_015058912.1 | conjugal transfer protein TraE | - |
| A0I22_RS28125 () | 9141..10295 | - | 1155 | WP_001139955.1 | integrase | - |
| A0I22_RS29535 () | 11665..11931 | + | 267 | WP_072143770.1 | prepilin | - |
| A0I22_RS28160 () | 11928..13350 | - | 1423 | Protein_11 | hypothetical protein | VF |
| A0I22_RS28165 () | 13338..13994 | - | 657 | WP_001193551.1 | hypothetical protein | VF |
| A0I22_RS28170 () | 13979..14539 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| A0I22_RS28175 () | 14549..15163 | - | 615 | WP_105962328.1 | hypothetical protein | VF |
| A0I22_RS28180 () | 15180..16265 | - | 1086 | WP_001208803.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| A0I22_RS28185 () | 16278..17831 | - | 1554 | WP_000362204.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| A0I22_RS28190 () | 17842..18294 | - | 453 | WP_001247333.1 | hypothetical protein | VF |
| A0I22_RS28195 () | 18281..19576 | - | 1296 | WP_000752776.1 | type 4b pilus protein PilO2 | - |
| A0I22_RS28200 () | 19569..21251 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| A0I22_RS28205 () | 21265..21702 | - | 438 | WP_000539811.1 | hypothetical protein | VF |
| A0I22_RS28210 () | 21702..22769 | - | 1068 | WP_021513968.1 | hypothetical protein | VF |
| A0I22_RS28220 () | 23521..23775 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| A0I22_RS28230 () | 23947..24630 | - | 684 | WP_000213863.1 | hypothetical protein | - |
| A0I22_RS28240 () | 24884..25417 | - | 534 | WP_001372168.1 | transcription termination factor NusG | - |
| A0I22_RS28250 () | 25859..26146 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| A0I22_RS28255 () | 26064..26327 | - | 264 | WP_001324596.1 | ash family protein | - |
| A0I22_RS28270 () | 27300..28331 | + | 1032 | WP_000907852.1 | replication initiation protein | - |
| A0I22_RS28290 () | 29235..29519 | + | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| A0I22_RS28295 () | 29519..29794 | + | 276 | WP_000421259.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| A0I22_RS28300 () | 29900..30181 | + | 282 | WP_001105066.1 | hypothetical protein | - |
| A0I22_RS29540 () | 30373..30639 | - | 267 | WP_000627832.1 | hypothetical protein | - |
| A0I22_RS28310 () | 30639..31133 | - | 495 | WP_015058884.1 | hypothetical protein | - |
| A0I22_RS28315 () | 31189..31791 | - | 603 | WP_000521606.1 | hypothetical protein | - |
| A0I22_RS28320 () | 31967..33019 | - | 1053 | WP_000655519.1 | hypothetical protein | - |
| A0I22_RS28325 () | 33232..33822 | - | 591 | WP_001401589.1 | hypothetical protein | - |
| A0I22_RS28330 () | 33822..34076 | - | 255 | WP_000343106.1 | hypothetical protein | - |
| A0I22_RS28345 () | 34645..35025 | + | 381 | WP_000465035.1 | hypothetical protein | - |
| A0I22_RS28350 () | 35027..35806 | + | 780 | WP_001164198.1 | site-specific integrase | - |
| A0I22_RS28355 () | 35986..36630 | + | 645 | WP_001144036.1 | ParA family protein | - |
| A0I22_RS28360 () | 36717..37025 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| A0I22_RS28365 () | 37439..38419 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| A0I22_RS28370 () | 38412..38828 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| A0I22_RS28375 () | 38830..40104 | - | 1275 | WP_015058887.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| A0I22_RS28380 () | 40104..40541 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| A0I22_RS28385 () | 40538..40786 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| A0I22_RS28395 () | 41204..42106 | + | 903 | WP_001302618.1 | DUF1281 domain-containing protein | - |
| A0I22_RS28400 () | 42110..42415 | + | 306 | WP_032155763.1 | hypothetical protein | - |
| A0I22_RS28405 () | 42491..43174 | + | 684 | WP_105962330.1 | DNA methylase | - |
| A0I22_RS28410 () | 43175..43396 | + | 222 | WP_001104885.1 | hypothetical protein | - |
| A0I22_RS28415 () | 43409..43843 | + | 435 | WP_000274472.1 | DUF1380 family protein | - |
| A0I22_RS28420 () | 43894..44664 | + | 771 | WP_001434682.1 | hypothetical protein | - |
| A0I22_RS28430 () | 45204..45506 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| A0I22_RS28435 () | 45553..45975 | + | 423 | WP_105962331.1 | DUF1380 family protein | - |
| A0I22_RS28440 () | 45972..46163 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| A0I22_RS28450 () | 46301..46582 | + | 282 | WP_162713425.1 | hypothetical protein | - |
| A0I22_RS28460 () | 46934..47461 | + | 528 | WP_001276114.1 | single-stranded DNA-binding protein | - |
| A0I22_RS28465 () | 47519..47752 | + | 234 | WP_000005985.1 | DUF905 family protein | - |
| A0I22_RS28470 () | 47811..49769 | + | 1959 | WP_001145462.1 | ParB/RepB/Spo0J family partition protein | - |
| A0I22_RS28475 () | 49824..50258 | + | 435 | WP_000845904.1 | conjugation system SOS inhibitor PsiB | - |
| A0I22_RS28480 () | 50255..50974 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| A0I22_RS28485 () | 50971..51567 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| A0I22_RS28495 () | 52030..52530 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| A0I22_RS28500 () | 52670..52969 | - | 300 | WP_001348082.1 | hypothetical protein | - |
| A0I22_RS28510 () | 53259..53693 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| A0I22_RS28515 () | 53787..54053 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| A0I22_RS28520 () | 54118..55008 | + | 891 | WP_000038332.1 | Recombination-promoting nuclease RpnA | VF |
| A0I22_RS28525 () | 55008..55253 | + | 246 | WP_001260884.1 | hypothetical protein | - |
| A0I22_RS28530 () | 55284..55535 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| A0I22_RS28540 () | 56116..56964 | + | 849 | WP_001077021.1 | DUF4942 domain-containing protein | - |
| A0I22_RS28545 () | 57050..57385 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| A0I22_RS28550 () | 57619..57951 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| A0I22_RS28555 () | 57962..60661 | + | 2700 | WP_010891268.1 | Protein TraI | Relaxase |
| A0I22_RS28560 () | 60698..62989 | - | 2292 | WP_001289276.1 | hypothetical protein | - |
| A0I22_RS28565 () | 62982..64052 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| A0I22_RS28570 () | 64071..65279 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 65459..65521 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 65459..65521 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 65459..65521 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 65459..65521 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| A0I22_RS28575 () | 65571..65723 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| A0I22_RS28580 () | 65795..66046 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| A0I22_RS29390 () | 66705..66881 | - | 177 | WP_001054897.1 | hypothetical protein | - |
| A0I22_RS28585 () | 67273..67482 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| A0I22_RS28590 () | 67554..68204 | - | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| A0I22_RS28595 () | 68278..70446 | - | 2169 | WP_000698357.1 | DotA/TraY family protein | - |
| A0I22_RS28600 () | 70543..71127 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| A0I22_RS28605 () | 71156..72358 | - | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| A0I22_RS28610 () | 72325..72939 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| A0I22_RS28615 () | 72939..75983 | - | 3045 | WP_001024782.1 | IncI1-type conjugal transfer protein TraU | - |
| A0I22_RS28620 () | 76073..76873 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| A0I22_RS28625 () | 76857..77045 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| A0I22_RS28630 () | 77109..77513 | - | 405 | WP_000086959.1 | IncI1-type conjugal transfer protein TraR | - |
| A0I22_RS28635 () | 77564..78091 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| A0I22_RS28640 () | 78091..78795 | - | 705 | WP_000801919.1 | IncI1-type conjugal transfer protein TraP | - |
| A0I22_RS28645 () | 78795..80084 | - | 1290 | WP_032330003.1 | conjugal transfer protein TraO | - |
| A0I22_RS28650 () | 80087..81070 | - | 984 | WP_001191877.1 | hypothetical protein | VF |
| A0I22_RS28655 () | 81081..81773 | - | 693 | WP_000138550.1 | DotI/IcmL family type IV secretion protein | - |
| A0I22_RS28660 () | 81770..82117 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|