MGE detailed information
MGE type: Prophage MGE length: 98241 bp
Accession: NZ_CP034792 Location: 1671178..1769418 Organism: Escherichia coli strain 2009C-3378 Replicon: chromosome
Accession: NZ_CP034792 Location: 1671178..1769418 Organism: Escherichia coli strain 2009C-3378 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DR788_RS08720 () | 1667427..1669853 | - | 2427 | WP_000041704.1 | dimethyl sulfoxide reductase subunit A | - |
| DR788_RS08725 () | 1670052..1670357 | - | 306 | WP_000778147.1 | DUF1161 domain-containing protein | - |
| DR788_RS08730 () | 1670465..1671175 | + | 711 | WP_001303515.1 | YnfC family lipoprotein | - |
| DR788_RS08735 () | 1671178..1671738 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| DR788_RS08740 () | 1671773..1672114 | - | 342 | WP_000705189.1 | DUF1283 family protein | - |
| DR788_RS08745 () | 1672249..1672575 | + | 327 | WP_001302046.1 | YnfA family protein | - |
| DR788_RS08755 () | 1673345..1673529 | - | 185 | Protein_1660 | DUF3596 domain-containing protein | - |
| DR788_RS08760 () | 1673564..1673815 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| DR788_RS08765 () | 1673888..1675282 | - | 1395 | Protein_1662 | 3'-5' exoribonuclease | - |
| DR788_RS08775 () | 1676587..1677672 | - | 1086 | Protein_1664 | exonuclease | - |
| DR788_RS08780 () | 1677765..1677956 | - | 192 | WP_001090200.1 | DUF1482 family protein | - |
| DR788_RS08785 () | 1677953..1678141 | - | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| DR788_RS08795 () | 1678710..1678928 | - | 219 | WP_001171930.1 | hypothetical protein | - |
| DR788_RS08800 () | 1679000..1679299 | - | 300 | WP_001240334.1 | hypothetical protein | - |
| DR788_RS08805 () | 1679652..1679930 | - | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DR788_RS08810 () | 1679932..1680123 | - | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| DR788_RS08815 () | 1680144..1680515 | - | 372 | WP_001169686.1 | hypothetical protein | - |
| DR788_RS08820 () | 1680613..1680915 | + | 303 | WP_000172738.1 | transcriptional regulator | - |
| DR788_RS08825 () | 1680912..1681337 | + | 426 | WP_000693943.1 | Rha family transcriptional regulator | - |
| DR788_RS08830 () | 1681360..1682322 | + | 963 | WP_000095669.1 | helix-turn-helix domain-containing protein | - |
| DR788_RS08835 () | 1682329..1683069 | + | 741 | WP_000788938.1 | ATP-binding protein | - |
| DR788_RS08840 () | 1683095..1683864 | + | 770 | Protein_1676 | DUF1627 domain-containing protein | - |
| DR788_RS08845 () | 1683880..1684275 | + | 396 | WP_001118159.1 | DUF977 family protein | - |
| DR788_RS08850 () | 1684332..1684916 | + | 585 | WP_000206793.1 | DUF551 domain-containing protein | - |
| DR788_RS08855 () | 1685032..1685136 | + | 105 | WP_001278450.1 | hypothetical protein | - |
| DR788_RS08860 () | 1685382..1685537 | + | 156 | WP_001303917.1 | type I toxin-antitoxin system toxin HokD | - |
| DR788_RS08865 () | 1685705..1685983 | + | 279 | WP_012779366.1 | hypothetical protein | - |
| DR788_RS08870 () | 1685985..1687034 | + | 1050 | WP_001265161.1 | DUF968 domain-containing protein | - |
| DR788_RS08875 () | 1687047..1687406 | + | 360 | WP_001217455.1 | RusA family crossover junction endodeoxyribonuclease | - |
| DR788_RS08880 () | 1687403..1688092 | + | 690 | WP_001059381.1 | antiterminator | - |
| DR788_RS08905 () | 1688730..1689158 | + | 429 | WP_001303509.1 | tellurite resistance protein | - |
| DR788_RS08910 () | 1689155..1689410 | + | 256 | Protein_1686 | DUF3927 family protein | - |
| DR788_RS08915 () | 1689637..1691487 | + | 1851 | WP_000023202.1 | SASA family carbohydrate esterase | - |
| DR788_RS08920 () | 1691927..1692142 | + | 216 | WP_024180155.1 | class II holin family protein | - |
| DR788_RS08925 () | 1692147..1692491 | + | 345 | WP_000731241.1 | YdfR family protein | - |
| DR788_RS08930 () | 1692542..1693075 | + | 534 | WP_000992137.1 | lysozyme | - |
| DR788_RS08935 () | 1693346..1693915 | + | 570 | WP_001056806.1 | hypothetical protein | - |
| DR788_RS08940 () | 1693915..1694031 | + | 117 | WP_000539789.1 | hypothetical protein | - |
| DR788_RS08950 () | 1694289..1694474 | + | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| DR788_RS08955 () | 1694899..1695126 | - | 228 | WP_000095736.1 | DUF3950 domain-containing protein | - |
| DR788_RS08960 () | 1695168..1695533 | + | 366 | WP_000279796.1 | HNH endonuclease | - |
| DR788_RS08970 () | 1695825..1696388 | + | 564 | WP_000958416.1 | terminase small subunit | - |
| DR788_RS08975 () | 1696385..1698046 | + | 1662 | WP_001301438.1 | terminase large subunit | - |
| DR788_RS08980 () | 1698110..1700047 | + | 1938 | WP_000173030.1 | phage major capsid protein | - |
| DR788_RS08985 () | 1700092..1700313 | + | 222 | WP_001063099.1 | hypothetical protein | - |
| DR788_RS08990 () | 1700259..1702760 | + | 2502 | WP_001301962.1 | phage portal protein | - |
| DR788_RS08995 () | 1702840..1703166 | + | 327 | WP_000126019.1 | head-tail connector protein | - |
| DR788_RS09000 () | 1703176..1703526 | + | 351 | WP_001007905.1 | phage head closure protein | - |
| DR788_RS09005 () | 1703523..1703969 | + | 447 | WP_000573374.1 | HK97 gp10 family phage protein | - |
| DR788_RS09010 () | 1703966..1704310 | + | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| DR788_RS09015 () | 1704376..1705092 | + | 717 | WP_001275434.1 | immunoglobulin domain-containing protein | - |
| DR788_RS09020 () | 1705107..1705481 | + | 375 | WP_000710952.1 | phage tail assembly chaperone | - |
| DR788_RS09025 () | 1705577..1705786 | + | 210 | WP_001453746.1 | DUF4035 domain-containing protein | - |
| DR788_RS09030 () | 1705834..1709076 | + | 3243 | WP_000212818.1 | phage tail tape measure protein | - |
| DR788_RS09035 () | 1709069..1709410 | + | 342 | WP_000807954.1 | phage tail protein | - |
| DR788_RS09040 () | 1709410..1709847 | + | 438 | WP_001179509.1 | phage minor tail protein L | - |
| DR788_RS09045 () | 1710035..1713513 | + | 3479 | Protein_1711 | host specificity protein J | - |
| DR788_RS09055 () | 1713581..1714180 | + | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| DR788_RS09060 () | 1714245..1715468 | + | 1224 | WP_000268860.1 | prophage tail fiber N-terminal domain-containing protein | - |
| DR788_RS09065 () | 1715470..1715739 | + | 270 | WP_001023362.1 | phage tail fiber C-terminal domain-containing protein | - |
| DR788_RS09070 () | 1715853..1716428 | + | 576 | WP_001131642.1 | hypothetical protein | VF |
| DR788_RS09080 () | 1717139..1717789 | + | 651 | WP_001121225.1 | hypothetical protein | VF |
| DR788_RS09085 () | 1717939..1718334 | + | 396 | Protein_1717 | IS256 family transposase ISEic2 | Transposase |
| DR788_RS09090 () | 1718372..1719909 | - | 1538 | Protein_1718 | IS66 family transposase ISEc8 | Transposase |
| DR788_RS09095 () | 1719959..1720306 | - | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| DR788_RS09100 () | 1720303..1720683 | - | 381 | WP_001171540.1 | IS66 family transposase ISEc8 | Transposase |
| DR788_RS09105 () | 1720778..1721596 | + | 819 | Protein_1721 | IS256 family transposase IS1414 | Transposase |
| DR788_RS09110 () | 1721646..1721888 | - | 243 | WP_001120551.1 | DinI-like family protein | - |
| DR788_RS09115 () | 1722066..1722617 | - | 552 | Protein_1723 | Putative defective protein IntQ ; Integrase | Integrase |
| DR788_RS09120 () | 1722605..1723843 | - | 1239 | Protein_1724 | exonuclease | - |
| DR788_RS09125 () | 1723936..1724124 | - | 189 | WP_000199475.1 | DUF1482 family protein | - |
| DR788_RS09130 () | 1724121..1724309 | - | 189 | WP_000449175.1 | cell division inhibitor | - |
| DR788_RS09140 () | 1724874..1725083 | + | 210 | WP_001133037.1 | hypothetical protein | - |
| DR788_RS09145 () | 1725084..1725722 | - | 639 | WP_000394548.1 | hypothetical protein | - |
| DR788_RS09150 () | 1725734..1725886 | - | 153 | WP_000380316.1 | DUF1391 family protein | - |
| DR788_RS09155 () | 1726179..1726517 | - | 339 | WP_001416688.1 | peptidase S24 | - |
| DR788_RS09160 () | 1726909..1727151 | + | 243 | WP_000747948.1 | hypothetical protein | - |
| DR788_RS09165 () | 1727135..1727560 | + | 426 | WP_000693878.1 | Rha family transcriptional regulator | - |
| DR788_RS09170 () | 1727629..1728672 | + | 1044 | WP_001262402.1 | hypothetical protein | - |
| DR788_RS09175 () | 1728665..1729126 | + | 462 | WP_000139447.1 | replication protein | - |
| DR788_RS09180 () | 1729160..1729876 | + | 717 | WP_000450627.1 | DUF1627 domain-containing protein | - |
| DR788_RS09185 () | 1729909..1730190 | + | 282 | WP_000603384.1 | DNA-binding protein | - |
| DR788_RS09190 () | 1730187..1730414 | + | 228 | WP_000699809.1 | hypothetical protein | - |
| DR788_RS09195 () | 1730407..1730718 | + | 312 | WP_001289673.1 | hypothetical protein | - |
| DR788_RS09200 () | 1730846..1731064 | + | 219 | WP_000683609.1 | DUF4014 family protein | - |
| DR788_RS09205 () | 1731066..1731623 | + | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| - () | 1731844..1731902 | - | 59 | - | - | Antitoxin Detail |
| DR788_RS09210 () | 1731914..1732069 | + | 156 | WP_000813258.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| DR788_RS09215 () | 1732189..1732533 | + | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| DR788_RS09220 () | 1732655..1732927 | + | 273 | WP_000191872.1 | hypothetical protein | - |
| DR788_RS09225 () | 1732929..1733978 | + | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| DR788_RS09230 () | 1733991..1734296 | + | 306 | WP_001217444.1 | RusA family crossover junction endodeoxyribonuclease | - |
| DR788_RS09235 () | 1734359..1734913 | + | 555 | WP_000640035.1 | DUF1133 family protein | - |
| DR788_RS09240 () | 1735138..1735335 | + | 198 | WP_000917763.1 | hypothetical protein | - |
| DR788_RS09245 () | 1735471..1736184 | + | 714 | WP_000301797.1 | helix-turn-helix domain-containing protein | - |
| DR788_RS09260 () | 1736635..1737066 | + | 432 | WP_001302123.1 | tellurite resistance protein | - |
| DR788_RS09265 () | 1737063..1737318 | + | 256 | Protein_1750 | DUF3927 family protein | - |
| DR788_RS09270 () | 1737544..1739394 | + | 1851 | WP_000023184.1 | SASA family carbohydrate esterase | - |
| DR788_RS09275 () | 1739833..1740048 | + | 216 | WP_024180155.1 | class II holin family protein | - |
| DR788_RS09280 () | 1740053..1740460 | + | 408 | WP_000731239.1 | YdfR family protein | - |
| DR788_RS09285 () | 1740363..1740959 | + | 597 | Protein_1754 | phage major capsid protein | - |
| DR788_RS09290 () | 1741004..1741225 | + | 222 | WP_001063023.1 | hypothetical protein | - |
| DR788_RS09295 () | 1741171..1743269 | + | 2099 | Protein_1756 | phage portal protein | - |
| DR788_RS09300 () | 1743266..1743592 | + | 327 | WP_000126026.1 | head-tail connector protein | - |
| DR788_RS09305 () | 1743602..1743952 | + | 351 | WP_001007901.1 | phage head closure protein | - |
| DR788_RS09310 () | 1743949..1744395 | + | 447 | WP_000573374.1 | HK97 gp10 family phage protein | - |
| DR788_RS09315 () | 1744392..1744736 | + | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| DR788_RS09320 () | 1744795..1745511 | + | 717 | WP_001275508.1 | tail protein | - |
| DR788_RS09325 () | 1745517..1745891 | + | 375 | WP_001030063.1 | phage tail assembly chaperone | - |
| DR788_RS09330 () | 1745987..1746196 | + | 210 | WP_001453746.1 | DUF4035 domain-containing protein | - |
| DR788_RS09335 () | 1746244..1749486 | + | 3243 | WP_000212818.1 | phage tail tape measure protein | - |
| DR788_RS09340 () | 1749479..1749820 | + | 342 | WP_000807954.1 | phage tail protein | - |
| DR788_RS09345 () | 1749820..1750518 | + | 699 | WP_001179510.1 | phage minor tail protein L | - |
| DR788_RS09350 () | 1750529..1751272 | + | 744 | WP_000194720.1 | C40 family peptidase | - |
| DR788_RS09355 () | 1751218..1751850 | + | 633 | WP_050439450.1 | tail assembly protein | - |
| DR788_RS09360 () | 1752192..1753703 | + | 1512 | Protein_1769 | host specificity protein J | - |
| DR788_RS09370 () | 1753703..1756270 | + | 2568 | Protein_1770 | host specificity protein J | - |
| DR788_RS09375 () | 1756338..1756937 | + | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| DR788_RS09380 () | 1757002..1758315 | + | 1314 | WP_000268848.1 | ISNCY family transposase KIS | Transposase |
| DR788_RS09385 () | 1758317..1758586 | + | 270 | WP_001023407.1 | phage tail fiber C-terminal domain-containing protein | - |
| DR788_RS09390 () | 1758700..1759275 | + | 576 | WP_001131658.1 | hypothetical protein | VF |
| DR788_RS09395 () | 1759348..1759977 | + | 630 | WP_001303500.1 | hypothetical protein | VF |
| DR788_RS09400 () | 1760059..1760700 | + | 642 | WP_001143804.1 | hypothetical protein | VF |
| DR788_RS09410 () | 1760862..1761104 | - | 243 | WP_001120551.1 | DinI-like family protein | - |
| DR788_RS09415 () | 1761236..1762519 | + | 1284 | Protein_1778 | MHS family MFS transporter YdfJ | - |
| DR788_RS09420 () | 1762608..1764068 | + | 1461 | WP_000527769.1 | mannitol dehydrogenase family protein | - |
| DR788_RS09425 () | 1764104..1764307 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| DR788_RS09430 () | 1764484..1765170 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| DR788_RS09435 () | 1765259..1766005 | - | 747 | WP_000636568.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| DR788_RS09440 () | 1766142..1768187 | + | 2046 | WP_001302117.1 | peptidyl-dipeptidase Dcp | - |
| DR788_RS09445 () | 1768232..1768750 | - | 519 | WP_001024796.1 | 2-oxo-tetronate isomerase | - |
| DR788_RS09450 () | 1769026..1769418 | + | 393 | WP_000671724.1 | YdeI family stress tolerance OB fold protein | - |
| DR788_RS09455 () | 1769673..1770563 | + | 891 | WP_000592852.1 | diguanylate cyclase DgcZ | - |
| DR788_RS28485 () | 1770678..1770782 | - | 105 | WP_211180496.1 | protein MgtT | - |
| DR788_RS09460 () | 1770782..1770877 | - | 96 | WP_000901365.1 | protein MgtS | - |
| DR788_RS09465 () | 1770985..1771956 | - | 972 | WP_001310251.1 | transcriptional regulator FtrA | - |
| DR788_RS09470 () | 1772051..1772446 | + | 396 | WP_001271101.1 | rhodanese | - |
| DR788_RS09475 () | 1772487..1773674 | - | 1188 | WP_001054199.1 | efflux MFS transporter YdeE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|