MGE detailed information
MGE type: Mobilizable plasmid MGE length: 211326 bp
Accession: NZ_CP034476 Location: 1..211326 Organism: Pantoea agglomerans strain CFSAN047154 Replicon: plasmid pCFSAN047154_2
Accession: NZ_CP034476 Location: 1..211326 Organism: Pantoea agglomerans strain CFSAN047154 Replicon: plasmid pCFSAN047154_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1629_RS22105 () | 1722..2015 | - | 294 | WP_033774036.1 | DUF1493 family protein | - |
| D1629_RS22110 () | 2009..2467 | - | 459 | WP_033774141.1 | hypothetical protein | - |
| D1629_RS22115 () | 3132..5669 | + | 2538 | WP_033774034.1 | UvrABC system protein A | VF |
| D1629_RS22120 () | 5769..6083 | + | 315 | WP_010671977.1 | HigA family addiction module antidote protein | - |
| D1629_RS22125 () | 6135..6974 | - | 840 | WP_033774032.1 | MBL fold metallo-hydrolase | - |
| D1629_RS22130 () | 7142..8455 | - | 1314 | WP_010256858.1 | CitMHS family transporter | - |
| D1629_RS22135 () | 8797..10248 | - | 1452 | WP_072008786.1 | Flagellin | VF |
| D1629_RS22140 () | 10454..11227 | - | 774 | WP_033774028.1 | Diacetyl reductase [(S)-acetoin forming] | VF |
| D1629_RS22145 () | 11249..12928 | - | 1680 | WP_010256852.1 | acetolactate synthase AlsS | - |
| D1629_RS22150 () | 12943..13725 | - | 783 | WP_033774026.1 | acetolactate decarboxylase | - |
| D1629_RS22155 () | 13830..14735 | + | 906 | WP_033774024.1 | LysR family transcriptional regulator | - |
| D1629_RS22160 () | 14807..15052 | + | 246 | WP_010256845.1 | hypothetical protein | - |
| D1629_RS22165 () | 15103..18147 | - | 3045 | WP_129063420.1 | efflux RND transporter permease subunit | - |
| D1629_RS22170 () | 18144..19277 | - | 1134 | WP_050680280.1 | efflux RND transporter periplasmic adaptor subunit | - |
| D1629_RS22175 () | 19371..20540 | - | 1170 | WP_033770228.1 | HAMP domain-containing protein | - |
| D1629_RS22180 () | 20537..21235 | - | 699 | WP_010256840.1 | Response regulator ArlR | VF |
| D1629_RS22185 () | 21365..22150 | + | 786 | WP_129063421.1 | MipA/OmpV family protein | - |
| D1629_RS22190 () | 22612..23562 | + | 951 | WP_029519683.1 | Recombination-promoting nuclease RpnD | VF |
| D1629_RS22195 () | 23677..24555 | - | 879 | WP_010256830.1 | ROK family protein | - |
| D1629_RS22200 () | 24797..26080 | - | 1284 | WP_033759862.1 | beta-ketoacyl-ACP synthase II | - |
| D1629_RS22205 () | 26318..26932 | - | 615 | WP_010671991.1 | HTH-type transcriptional regulator BetI | VF |
| D1629_RS22210 () | 27077..29035 | - | 1959 | WP_033774015.1 | Acetoin dehydrogenase operon transcriptional activator AcoR | VF |
| D1629_RS22215 () | 29225..30688 | + | 1464 | WP_010256816.1 | sugar porter family MFS transporter | - |
| D1629_RS22220 () | 30685..31698 | + | 1014 | WP_033774013.1 | Gfo/Idh/MocA family oxidoreductase | - |
| D1629_RS22225 () | 31698..32477 | + | 780 | WP_010256807.1 | TIM barrel protein | - |
| D1629_RS22230 () | 32546..33466 | + | 921 | WP_129063422.1 | substrate-binding domain-containing protein | - |
| D1629_RS22235 () | 33667..34500 | + | 834 | WP_033774011.1 | winged helix-turn-helix domain-containing protein | - |
| D1629_RS22240 () | 34497..34994 | + | 498 | WP_033774010.1 | hypothetical protein | - |
| D1629_RS22245 () | 35107..35541 | - | 435 | WP_129063423.1 | DUF1795 domain-containing protein | - |
| D1629_RS22250 () | 35534..37717 | - | 2184 | WP_129063424.1 | peptidase domain-containing ABC transporter | - |
| D1629_RS22255 () | 37734..38993 | - | 1260 | WP_033774006.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| D1629_RS22260 () | 39019..40341 | - | 1323 | WP_010256785.1 | TolC family outer membrane protein | - |
| D1629_RS22265 () | 40376..41038 | - | 663 | WP_033774003.1 | Transcriptional regulatory protein RcsB | VF |
| D1629_RS22270 () | 41098..42153 | - | 1056 | WP_033774002.1 | type 1 fimbrial protein | - |
| D1629_RS22275 () | 42166..44757 | - | 2592 | WP_050499139.1 | Outer membrane usher protein HtrE | VF |
| D1629_RS22280 () | 44783..45562 | - | 780 | WP_108912517.1 | putative fimbrial chaperone YadV | VF |
| D1629_RS22285 () | 45582..46112 | - | 531 | WP_010256772.1 | Major fimbrial subunit SMF-1 | VF |
| D1629_RS22290 () | 46207..46428 | - | 222 | WP_010256766.1 | hypothetical protein | - |
| D1629_RS22295 () | 46438..46755 | - | 318 | WP_010256762.1 | hypothetical protein | - |
| D1629_RS22300 () | 47781..48371 | + | 591 | WP_033759834.1 | helix-turn-helix domain-containing protein | - |
| D1629_RS22305 () | 48417..49052 | + | 636 | WP_033774001.1 | LuxR family transcriptional regulator | - |
| D1629_RS22310 () | 49193..49912 | + | 720 | WP_033774000.1 | hypothetical protein | - |
| D1629_RS22315 () | 50276..61876 | + | 11601 | WP_164973035.1 | hypothetical protein | - |
| D1629_RS22320 () | 62160..63485 | + | 1326 | WP_129063426.1 | TolC family protein | - |
| D1629_RS22325 () | 63574..65850 | + | 2277 | WP_158601662.1 | type I secretion system permease/ATPase | - |
| D1629_RS22330 () | 65847..67091 | + | 1245 | WP_010257175.1 | HlyD family type I secretion periplasmic adaptor subunit | - |
| D1629_RS22335 () | 67154..67471 | - | 318 | WP_033774135.1 | NirD/YgiW/YdeI family stress tolerance protein | - |
| D1629_RS22340 () | 67512..70361 | - | 2850 | WP_033774134.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| D1629_RS22345 () | 70983..71219 | + | 237 | WP_072008792.1 | DUF333 domain-containing protein | - |
| D1629_RS22350 () | 71757..71960 | - | 204 | WP_010257166.1 | hemolysin | - |
| D1629_RS22355 () | 72195..72638 | - | 444 | WP_033774132.1 | PACE efflux transporter | - |
| D1629_RS22360 () | 73241..74251 | - | 1011 | WP_033774131.1 | LacI family DNA-binding transcriptional regulator | - |
| D1629_RS22365 () | 74360..75373 | + | 1014 | WP_033774157.1 | Gfo/Idh/MocA family oxidoreductase | - |
| D1629_RS22370 () | 75517..76052 | + | 536 | Protein_55 | tetratricopeptide repeat protein | - |
| D1629_RS22375 () | 76089..76589 | + | 501 | WP_080701328.1 | ECF RNA polymerase sigma factor EcfG | VF |
| D1629_RS22380 () | 76586..77371 | + | 786 | WP_022624292.1 | membrane protein | - |
| D1629_RS22385 () | 77394..77972 | - | 579 | WP_033774155.1 | YceI family protein | - |
| D1629_RS22390 () | 78671..79807 | + | 1137 | WP_129063427.1 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | VF |
| D1629_RS22395 () | 79809..80792 | + | 984 | WP_010257142.1 | Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase | VF |
| D1629_RS22400 () | 80789..82768 | + | 1980 | WP_033774129.1 | Bifunctional polymyxin resistance protein ArnA | VF |
| D1629_RS22405 () | 82768..83670 | + | 903 | WP_033774128.1 | 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase | - |
| D1629_RS22410 () | 83670..85337 | + | 1668 | WP_033774127.1 | lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase | - |
| D1629_RS22415 () | 85337..85657 | + | 321 | WP_010257131.1 | EamA family transporter | - |
| D1629_RS22420 () | 85654..86019 | + | 366 | WP_022624285.1 | 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase subunit F | - |
| D1629_RS22425 () | 86124..86336 | - | 213 | Protein_66 | haloacid dehalogenase type II | - |
| D1629_RS22430 () | 86589..86768 | + | 180 | WP_050499148.1 | hypothetical protein | - |
| D1629_RS22435 () | 86888..87220 | + | 333 | WP_031292300.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| D1629_RS22440 () | 87217..87507 | + | 291 | WP_022624282.1 | helix-turn-helix domain-containing protein | - |
| D1629_RS22445 () | 87797..88651 | - | 855 | Protein_70 | tyrosine-type recombinase/integrase | - |
| D1629_RS22450 () | 89265..89654 | - | 390 | WP_033774124.1 | VOC family protein | - |
| D1629_RS22455 () | 90073..90549 | + | 477 | WP_033774122.1 | Phenazine biosynthesis protein PhzB 2 | VF |
| D1629_RS22460 () | 90684..91313 | + | 630 | WP_033774121.1 | Phenazine biosynthesis protein PhzD | VF |
| D1629_RS22465 () | 91381..93210 | + | 1830 | WP_050499147.1 | Anthranilate synthase component 1 | VF |
| D1629_RS22470 () | 93210..94073 | + | 864 | WP_033774119.1 | Trans-2,3-dihydro-3-hydroxyanthranilate isomerase | VF |
| D1629_RS22475 () | 94111..94737 | + | 627 | WP_072008789.1 | Phenazine biosynthesis protein PhzG | VF |
| D1629_RS22480 () | 94718..95818 | + | 1101 | WP_050499146.1 | AMP-binding protein | - |
| D1629_RS22485 () | 95818..97239 | + | 1422 | WP_033774118.1 | aldehyde dehydrogenase family protein | - |
| D1629_RS22490 () | 97284..97967 | + | 684 | WP_033774116.1 | methyltransferase domain-containing protein | - |
| D1629_RS22495 () | 97991..99427 | + | 1437 | WP_050499145.1 | MFS transporter | - |
| D1629_RS22500 () | 99427..100218 | + | 792 | WP_033774114.1 | SDR family oxidoreductase | - |
| D1629_RS22505 () | 100211..101365 | + | 1155 | WP_050499144.1 | hypothetical protein | - |
| D1629_RS22510 () | 101436..102917 | + | 1482 | WP_080717704.1 | AMP-binding protein | - |
| D1629_RS22515 () | 102907..103134 | + | 228 | WP_033774111.1 | hypothetical protein | VF |
| D1629_RS22520 () | 103135..104205 | + | 1071 | WP_050499143.1 | hypothetical protein | - |
| D1629_RS22525 () | 104205..104696 | + | 492 | WP_033774108.1 | DUF2165 family protein | - |
| D1629_RS22530 () | 105959..107014 | + | 1056 | WP_033774106.1 | hypothetical protein | - |
| D1629_RS22535 () | 107618..108650 | + | 1033 | Protein_88 | tyrosine-type recombinase/integrase | - |
| D1629_RS22540 () | 108924..109223 | - | 300 | Protein_89 | hypothetical protein | - |
| D1629_RS22545 () | 109244..109720 | - | 477 | WP_033774104.1 | hypothetical protein | - |
| D1629_RS22550 () | 109792..110049 | - | 258 | WP_033774102.1 | hypothetical protein | - |
| D1629_RS24560 () | 110153..110458 | - | 306 | WP_164973034.1 | hypothetical protein | - |
| D1629_RS22555 () | 110394..110678 | + | 285 | Protein_93 | general secretion pathway protein GspD | - |
| D1629_RS24565 () | 111017..111193 | + | 177 | WP_158132465.1 | hypothetical protein | - |
| D1629_RS22560 () | 111488..112406 | + | 919 | Protein_95 | Rpn family recombination-promoting nuclease/putative transposase | - |
| D1629_RS22565 () | 112465..113067 | - | 603 | WP_033774099.1 | DUF2913 family protein | - |
| D1629_RS22570 () | 113783..114520 | + | 738 | WP_033774098.1 | metallophosphoesterase | - |
| D1629_RS22575 () | 114629..115795 | - | 1167 | WP_129063429.1 | MFS transporter | - |
| D1629_RS22580 () | 115857..117452 | - | 1596 | WP_129063430.1 | GNAT family N-acetyltransferase | - |
| D1629_RS22585 () | 118010..118635 | - | 626 | Protein_100 | transposase | - |
| D1629_RS22590 () | 118669..118899 | - | 231 | Protein_101 | IS3 family transposase ISEhe4 | Transposase |
| D1629_RS22595 () | 119158..119976 | + | 819 | WP_089415112.1 | DUF4225 domain-containing protein | - |
| D1629_RS22600 () | 119973..120287 | - | 315 | WP_033759977.1 | hypothetical protein | - |
| D1629_RS22605 () | 120650..120937 | - | 288 | WP_129063431.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| D1629_RS22610 () | 120934..121185 | - | 252 | WP_033774093.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| D1629_RS22615 () | 121486..122619 | - | 1134 | WP_033774091.1 | glutathione-independent formaldehyde dehydrogenase | - |
| D1629_RS22620 () | 122989..123939 | - | 951 | WP_010671919.1 | sulfonate ABC transporter substrate-binding protein | - |
| D1629_RS22625 () | 124035..125924 | - | 1890 | WP_033774090.1 | Transcriptional regulatory protein ZraR | VF |
| D1629_RS22630 () | 126199..127371 | + | 1173 | WP_129063432.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
| D1629_RS22635 () | 127391..128803 | + | 1413 | WP_129063433.1 | FAD/NAD(P)-binding protein | - |
| D1629_RS22640 () | 128872..130281 | + | 1410 | WP_129063434.1 | LLM class flavin-dependent oxidoreductase | - |
| D1629_RS22645 () | 130642..132102 | + | 1461 | WP_033781082.1 | MFS transporter | - |
| D1629_RS22650 () | 132095..133312 | + | 1218 | WP_129063435.1 | monooxygenase | - |
| D1629_RS22655 () | 133607..134077 | - | 471 | WP_033770116.1 | SgcJ/EcaC family oxidoreductase | - |
| D1629_RS22660 () | 135012..136049 | + | 1038 | WP_129063436.1 | tyrosine-type recombinase/integrase | - |
| D1629_RS22665 () | 136487..138814 | - | 2328 | WP_129063437.1 | Fe(2+) transporter FeoB | VF |
| D1629_RS22670 () | 138814..139038 | - | 225 | WP_033774079.1 | FeoA domain-containing protein | - |
| D1629_RS22675 () | 139519..139899 | - | 381 | WP_010671929.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| D1629_RS22680 () | 140871..141107 | + | 237 | WP_033774076.1 | YgdI/YgdR family lipoprotein | - |
| D1629_RS22685 () | 141171..141713 | + | 543 | WP_033770122.1 | porin | - |
| D1629_RS22690 () | 141819..142121 | + | 303 | WP_029519489.1 | hypothetical protein | - |
| D1629_RS22695 () | 142173..142358 | - | 186 | WP_010671932.1 | DUF2256 domain-containing protein | - |
| D1629_RS22700 () | 143231..143632 | + | 402 | WP_010257055.1 | H-NS histone family protein | - |
| D1629_RS22705 () | 143862..144308 | - | 447 | WP_033774074.1 | VOC family protein | - |
| D1629_RS22710 () | 144377..145939 | - | 1563 | WP_033774073.1 | Phytochrome-like protein cph2 | VF |
| D1629_RS22715 () | 146215..146616 | + | 402 | WP_010671934.1 | H-NS histone family protein | - |
| D1629_RS22720 () | 146708..147700 | - | 993 | WP_129063438.1 | HTH-type transcriptional regulator CdhR | VF |
| D1629_RS22725 () | 147776..148555 | - | 780 | WP_129063439.1 | MBL fold metallo-hydrolase | - |
| D1629_RS22730 () | 148906..149574 | + | 669 | WP_033774070.1 | hypothetical protein | - |
| D1629_RS22735 () | 149624..150640 | - | 1017 | WP_010257039.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| D1629_RS22740 () | 150745..152718 | - | 1974 | WP_129063440.1 | Aerotaxis receptor | VF |
| D1629_RS22745 () | 153078..153317 | + | 240 | WP_010257033.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| D1629_RS22750 () | 153317..153604 | + | 288 | WP_033759930.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| D1629_RS22755 () | 153649..153945 | - | 297 | WP_039387382.1 | hypothetical protein | - |
| D1629_RS22760 () | 154145..154321 | + | 177 | WP_010257023.1 | stress-induced protein | - |
| D1629_RS22765 () | 154385..155281 | - | 897 | WP_129063441.1 | HTH-type transcriptional regulator PgrR | VF |
| D1629_RS22770 () | 155415..156608 | + | 1194 | WP_164973036.1 | MFS transporter | - |
| D1629_RS22775 () | 156677..157702 | + | 1026 | WP_010257012.1 | alpha/beta hydrolase | - |
| D1629_RS22780 () | 157762..160866 | - | 3105 | WP_129063443.1 | Multidrug resistance protein MexB | VF |
| D1629_RS24570 () | 161157..161324 | + | 168 | WP_009093121.1 | hypothetical protein | - |
| D1629_RS22785 () | 161659..162006 | + | 348 | WP_003850685.1 | HNH nuclease YajD | - |
| D1629_RS22790 () | 162180..162623 | - | 444 | WP_129063460.1 | hypothetical protein | - |
| D1629_RS22795 () | 162978..165305 | + | 2328 | WP_033770142.1 | FdhF/YdeP family oxidoreductase | - |
| D1629_RS22800 () | 165543..166658 | + | 1116 | WP_129063444.1 | metallophosphoesterase | - |
| D1629_RS22805 () | 166736..167536 | + | 801 | WP_010256989.1 | MBL fold metallo-hydrolase | - |
| D1629_RS22810 () | 167592..169517 | - | 1926 | WP_050680262.1 | Methyl-accepting chemotaxis protein I | VF |
| D1629_RS22815 () | 170120..171778 | - | 1659 | WP_033774058.1 | Methyl-accepting chemotaxis protein I | VF |
| D1629_RS22820 () | 172420..172749 | + | 330 | WP_129063445.1 | hypothetical protein | - |
| D1629_RS22830 () | 174018..175235 | + | 1218 | WP_010256973.1 | diguanylate phosphodiesterase | - |
| D1629_RS22835 () | 175407..175616 | + | 210 | WP_129063446.1 | CsbD family protein | - |
| D1629_RS22840 () | 175812..176576 | + | 765 | WP_010256962.1 | MerR family transcriptional regulator | - |
| D1629_RS22845 () | 176650..177138 | - | 489 | WP_010256958.1 | Hsp20 family protein | - |
| D1629_RS22850 () | 177314..177553 | - | 240 | WP_022624236.1 | hypothetical protein | - |
| D1629_RS22855 () | 177922..178146 | + | 225 | WP_010256955.1 | DUF3606 domain-containing protein | - |
| D1629_RS22860 () | 178667..180451 | + | 1785 | WP_129063447.1 | GGDEF and EAL domain-containing protein | - |
| D1629_RS22865 () | 180651..180860 | + | 210 | WP_033759908.1 | DUF1471 domain-containing protein | - |
| D1629_RS22870 () | 181112..182299 | + | 1188 | WP_129063448.1 | diguanylate phosphodiesterase | - |
| D1629_RS22875 () | 183663..184736 | - | 1074 | WP_010256943.1 | RepB family plasmid replication initiator protein | - |
| D1629_RS22880 () | 186789..187991 | + | 1203 | WP_010256940.1 | Plasmid partition protein A | VF |
| D1629_RS22885 () | 187988..188959 | + | 972 | WP_010671957.1 | ParB/RepB/Spo0J family partition protein | - |
| D1629_RS22890 () | 189179..190105 | + | 927 | WP_033770161.1 | aminoimidazole riboside kinase | - |
| D1629_RS22895 () | 190263..191798 | + | 1536 | WP_129063449.1 | carbohydrate porin | - |
| D1629_RS22900 () | 191866..193236 | + | 1371 | WP_010256928.1 | sucrose-specific PTS transporter subunit IIBC | - |
| D1629_RS22905 () | 193236..194645 | + | 1410 | WP_052271891.1 | sucrose-6-phosphate hydrolase | - |
| D1629_RS22910 () | 194675..195679 | + | 1005 | WP_129063450.1 | LacI family DNA-binding transcriptional regulator | - |
| D1629_RS22915 () | 195705..196895 | - | 1191 | WP_129063451.1 | cytochrome P450 | - |
| D1629_RS22920 () | 196918..197463 | - | 546 | WP_129063452.1 | chorismate mutase | - |
| D1629_RS22925 () | 197846..198091 | + | 246 | WP_129063453.1 | hypothetical protein | - |
| D1629_RS22930 () | 198093..199004 | - | 912 | WP_129063454.1 | GNAT family N-acetyltransferase | - |
| D1629_RS22935 () | 199487..199696 | + | 210 | WP_064703104.1 | hypothetical protein | - |
| D1629_RS22940 () | 200095..201678 | + | 1584 | WP_129063455.1 | sensor domain-containing diguanylate cyclase | - |
| D1629_RS22945 () | 201703..203484 | - | 1782 | WP_029519494.1 | GGDEF and EAL domain-containing protein | - |
| D1629_RS22950 () | 203831..205264 | + | 1434 | WP_129063456.1 | Methyl-accepting chemotaxis protein II | VF |
| D1629_RS22960 () | 205626..205865 | + | 240 | WP_010256895.1 | hypothetical protein | - |
| D1629_RS22970 () | 206271..208406 | + | 2136 | WP_129063457.1 | EAL domain-containing protein | - |
| D1629_RS22975 () | 208462..209046 | - | 585 | WP_129063458.1 | GNAT family N-acetyltransferase | - |
| D1629_RS22980 () | 209307..209876 | + | 570 | WP_129063459.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|