Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/ParE-RelB |
Location | 153078..153604 | Replicon | plasmid pCFSAN047154_2 |
Accession | NZ_CP034476 | ||
Organism | Pantoea agglomerans strain CFSAN047154 |
Toxin (Protein)
Gene name | relE | Uniprot ID | A0A7X2SUG9 |
Locus tag | D1629_RS22750 | Protein ID | WP_033759930.1 |
Coordinates | 153317..153604 (+) | Length | 96 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | A0A8X8DPB7 |
Locus tag | D1629_RS22745 | Protein ID | WP_010257033.1 |
Coordinates | 153078..153317 (+) | Length | 80 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
D1629_RS22730 | 148906..149574 | + | 669 | WP_033774070.1 | hypothetical protein | - |
D1629_RS22735 | 149624..150640 | - | 1017 | WP_010257039.1 | NAD(P)-dependent alcohol dehydrogenase | - |
D1629_RS22740 | 150745..152718 | - | 1974 | WP_129063440.1 | FIST C-terminal domain-containing protein | - |
D1629_RS22745 | 153078..153317 | + | 240 | WP_010257033.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
D1629_RS22750 | 153317..153604 | + | 288 | WP_033759930.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
D1629_RS22755 | 153649..153945 | - | 297 | WP_039387382.1 | hypothetical protein | - |
D1629_RS22760 | 154145..154321 | + | 177 | WP_010257023.1 | stress-induced protein | - |
D1629_RS22765 | 154385..155281 | - | 897 | WP_129063441.1 | LysR family transcriptional regulator | - |
D1629_RS22770 | 155415..156608 | + | 1194 | WP_164973036.1 | MFS transporter | - |
D1629_RS22775 | 156677..157702 | + | 1026 | WP_010257012.1 | alpha/beta hydrolase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Mobilizable plasmid | - | pilW | 1..211326 | 211326 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11076.95 Da Isoelectric Point: 10.3173
>T116116 WP_033759930.1 NZ_CP034476:153317-153604 [Pantoea agglomerans]
MTWQLEFDQRALKEWRKLGPTVREQLKKKLAECLESPRIEANKLSGMPDCYKIKLKSSGYRLVYQVIDDRVVVFVVAVGK
RERSEVYSAASRRLS
MTWQLEFDQRALKEWRKLGPTVREQLKKKLAECLESPRIEANKLSGMPDCYKIKLKSSGYRLVYQVIDDRVVVFVVAVGK
RERSEVYSAASRRLS
Download Length: 288 bp
>T116116 NZ_CP034476:153317-153604 [Pantoea agglomerans]
ATGACCTGGCAACTGGAGTTCGATCAGAGGGCACTGAAAGAGTGGCGCAAGCTGGGCCCGACAGTACGTGAACAGCTTAA
AAAGAAGCTGGCTGAGTGTCTTGAGTCACCCAGAATTGAAGCGAACAAACTCAGCGGGATGCCTGACTGCTATAAGATCA
AGCTAAAGTCATCCGGTTATCGACTTGTATACCAGGTTATTGACGACCGGGTGGTGGTTTTTGTGGTGGCTGTCGGGAAA
AGAGAGCGCTCAGAGGTTTATTCTGCCGCTTCCAGGCGTCTCTCTTAA
ATGACCTGGCAACTGGAGTTCGATCAGAGGGCACTGAAAGAGTGGCGCAAGCTGGGCCCGACAGTACGTGAACAGCTTAA
AAAGAAGCTGGCTGAGTGTCTTGAGTCACCCAGAATTGAAGCGAACAAACTCAGCGGGATGCCTGACTGCTATAAGATCA
AGCTAAAGTCATCCGGTTATCGACTTGTATACCAGGTTATTGACGACCGGGTGGTGGTTTTTGTGGTGGCTGTCGGGAAA
AGAGAGCGCTCAGAGGTTTATTCTGCCGCTTCCAGGCGTCTCTCTTAA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9002.33 Da Isoelectric Point: 4.3410
>AT116116 WP_010257033.1 NZ_CP034476:153078-153317 [Pantoea agglomerans]
MGTINIRIDDDLKTRSYAALEKMGVTPSDALRLMLEYIADNERLPFKQTLLSDEDAALVDIVKERLRNPEPVRVTLDDL
MGTINIRIDDDLKTRSYAALEKMGVTPSDALRLMLEYIADNERLPFKQTLLSDEDAALVDIVKERLRNPEPVRVTLDDL
Download Length: 240 bp
>AT116116 NZ_CP034476:153078-153317 [Pantoea agglomerans]
ATGGGCACAATTAACATTCGAATCGATGATGACCTGAAGACACGATCCTATGCTGCGCTCGAAAAAATGGGTGTGACTCC
TTCTGATGCGCTGCGCCTGATGCTTGAATATATTGCAGATAATGAACGTCTTCCCTTTAAGCAAACGTTACTCAGTGACG
AAGATGCGGCGTTAGTAGACATAGTTAAAGAACGCCTGCGAAACCCTGAGCCTGTCCGGGTCACACTGGATGACCTTTAA
ATGGGCACAATTAACATTCGAATCGATGATGACCTGAAGACACGATCCTATGCTGCGCTCGAAAAAATGGGTGTGACTCC
TTCTGATGCGCTGCGCCTGATGCTTGAATATATTGCAGATAATGAACGTCTTCCCTTTAAGCAAACGTTACTCAGTGACG
AAGATGCGGCGTTAGTAGACATAGTTAAAGAACGCCTGCGAAACCCTGAGCCTGTCCGGGTCACACTGGATGACCTTTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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