Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 153078..153604 Replicon plasmid pCFSAN047154_2
Accession NZ_CP034476
Organism Pantoea agglomerans strain CFSAN047154

Toxin (Protein)


Gene name relE Uniprot ID A0A7X2SUG9
Locus tag D1629_RS22750 Protein ID WP_033759930.1
Coordinates 153317..153604 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A8X8DPB7
Locus tag D1629_RS22745 Protein ID WP_010257033.1
Coordinates 153078..153317 (+) Length 80 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D1629_RS22730 148906..149574 + 669 WP_033774070.1 hypothetical protein -
D1629_RS22735 149624..150640 - 1017 WP_010257039.1 NAD(P)-dependent alcohol dehydrogenase -
D1629_RS22740 150745..152718 - 1974 WP_129063440.1 FIST C-terminal domain-containing protein -
D1629_RS22745 153078..153317 + 240 WP_010257033.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
D1629_RS22750 153317..153604 + 288 WP_033759930.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
D1629_RS22755 153649..153945 - 297 WP_039387382.1 hypothetical protein -
D1629_RS22760 154145..154321 + 177 WP_010257023.1 stress-induced protein -
D1629_RS22765 154385..155281 - 897 WP_129063441.1 LysR family transcriptional regulator -
D1629_RS22770 155415..156608 + 1194 WP_164973036.1 MFS transporter -
D1629_RS22775 156677..157702 + 1026 WP_010257012.1 alpha/beta hydrolase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Mobilizable plasmid - pilW 1..211326 211326


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 96 a.a.        Molecular weight: 11076.95 Da        Isoelectric Point: 10.3173

>T116116 WP_033759930.1 NZ_CP034476:153317-153604 [Pantoea agglomerans]
MTWQLEFDQRALKEWRKLGPTVREQLKKKLAECLESPRIEANKLSGMPDCYKIKLKSSGYRLVYQVIDDRVVVFVVAVGK
RERSEVYSAASRRLS

Download         Length: 288 bp

>T116116 NZ_CP034476:153317-153604 [Pantoea agglomerans]
ATGACCTGGCAACTGGAGTTCGATCAGAGGGCACTGAAAGAGTGGCGCAAGCTGGGCCCGACAGTACGTGAACAGCTTAA
AAAGAAGCTGGCTGAGTGTCTTGAGTCACCCAGAATTGAAGCGAACAAACTCAGCGGGATGCCTGACTGCTATAAGATCA
AGCTAAAGTCATCCGGTTATCGACTTGTATACCAGGTTATTGACGACCGGGTGGTGGTTTTTGTGGTGGCTGTCGGGAAA
AGAGAGCGCTCAGAGGTTTATTCTGCCGCTTCCAGGCGTCTCTCTTAA

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 9002.33 Da        Isoelectric Point: 4.3410

>AT116116 WP_010257033.1 NZ_CP034476:153078-153317 [Pantoea agglomerans]
MGTINIRIDDDLKTRSYAALEKMGVTPSDALRLMLEYIADNERLPFKQTLLSDEDAALVDIVKERLRNPEPVRVTLDDL

Download         Length: 240 bp

>AT116116 NZ_CP034476:153078-153317 [Pantoea agglomerans]
ATGGGCACAATTAACATTCGAATCGATGATGACCTGAAGACACGATCCTATGCTGCGCTCGAAAAAATGGGTGTGACTCC
TTCTGATGCGCTGCGCCTGATGCTTGAATATATTGCAGATAATGAACGTCTTCCCTTTAAGCAAACGTTACTCAGTGACG
AAGATGCGGCGTTAGTAGACATAGTTAAAGAACGCCTGCGAAACCCTGAGCCTGTCCGGGTCACACTGGATGACCTTTAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A7X2SUG9


Antitoxin

Source ID Structure

References