MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 47644 bp
Accession: NZ_CP034295 Location: 1595150..1642793 Organism: Vibrio parahaemolyticus strain 20140829008-1 Replicon: chromosome
Accession: NZ_CP034295 Location: 1595150..1642793 Organism: Vibrio parahaemolyticus strain 20140829008-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHC66_RS24190 () | 1590340..1590726 | + | 387 | WP_108653711.1 | type IV conjugative transfer system lipoprotein TraV | - |
| EHC66_RS24195 () | 1590735..1593323 | + | 2589 | WP_108653742.1 | type IV secretion system protein TraC | - |
| EHC66_RS24200 () | 1593320..1593667 | + | 348 | WP_029863998.1 | type-F conjugative transfer system protein TrbI | - |
| EHC66_RS24205 () | 1593679..1594344 | + | 666 | WP_164503348.1 | type-F conjugative transfer system protein TraW | - |
| EHC66_RS24210 () | 1594341..1595348 | + | 1008 | WP_108653710.1 | conjugal transfer pilus assembly protein TraU | - |
| EHC66_RS24215 () | 1595360..1595935 | + | 576 | WP_108653709.1 | hypothetical protein | - |
| EHC66_RS24220 () | 1595939..1596547 | + | 609 | WP_108653708.1 | hypothetical protein | - |
| EHC66_RS24225 () | 1596664..1597371 | + | 708 | WP_108653707.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| EHC66_RS24230 () | 1597368..1599104 | + | 1737 | WP_108653706.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| EHC66_RS24235 () | 1599094..1599918 | + | 825 | WP_108653705.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| EHC66_RS24240 () | 1599940..1600353 | + | 414 | WP_108653704.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| EHC66_RS24245 () | 1600564..1601973 | + | 1410 | WP_108653703.1 | conjugal transfer protein TraH | - |
| EHC66_RS24250 () | 1601977..1604784 | + | 2808 | WP_108653702.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| EHC66_RS24255 () | 1604864..1605421 | + | 558 | WP_108653701.1 | hypothetical protein | - |
| EHC66_RS24260 () | 1605574..1607667 | + | 2094 | WP_108653700.1 | type IV conjugative transfer system coupling protein TraD | - |
| EHC66_RS24265 () | 1607892..1608635 | + | 744 | WP_108653699.1 | endonuclease | - |
| EHC66_RS24270 () | 1608836..1608985 | + | 150 | WP_108653698.1 | Hok/Gef family protein | - |
| EHC66_RS24275 () | 1609089..1614884 | + | 5796 | WP_108653697.1 | conjugative transfer relaxase/helicase TraI | - |
| EHC66_RS24280 () | 1614905..1615264 | - | 360 | WP_108653741.1 | hypothetical protein | - |
| EHC66_RS24285 () | 1615824..1616267 | - | 444 | WP_031428056.1 | lytic transglycosylase domain-containing protein | - |
| EHC66_RS24290 () | 1616321..1616663 | - | 343 | Protein_1436 | type I restriction endonuclease subunit M | - |
| EHC66_RS24295 () | 1616737..1617123 | - | 387 | WP_031428057.1 | hypothetical protein | - |
| EHC66_RS24300 () | 1617127..1617507 | - | 381 | WP_031428060.1 | hypothetical protein | - |
| EHC66_RS24305 () | 1618515..1618736 | - | 222 | WP_031428062.1 | hypothetical protein | - |
| EHC66_RS24310 () | 1620159..1620374 | - | 216 | WP_031428064.1 | hypothetical protein | - |
| EHC66_RS24315 () | 1620923..1621417 | - | 495 | WP_031428066.1 | hypothetical protein | - |
| EHC66_RS24320 () | 1621817..1622089 | - | 273 | WP_159404360.1 | hypothetical protein | - |
| EHC66_RS24325 () | 1622645..1623247 | + | 603 | WP_031428068.1 | DUF2913 family protein | - |
| EHC66_RS24330 () | 1623283..1623771 | - | 489 | WP_031428070.1 | DNA repair protein RadC | - |
| EHC66_RS24335 () | 1624621..1625901 | + | 1281 | WP_108653694.1 | SgrR family transcriptional regulator | - |
| EHC66_RS24340 () | 1625968..1626333 | + | 366 | WP_031428075.1 | hypothetical protein | - |
| EHC66_RS24345 () | 1626677..1627615 | - | 939 | WP_031428077.1 | DMT family transporter | - |
| EHC66_RS24350 () | 1627719..1628600 | + | 882 | WP_108653693.1 | LysR family transcriptional regulator | - |
| EHC66_RS24355 () | 1628804..1629292 | - | 489 | WP_108653692.1 | DUF523 domain-containing protein | - |
| EHC66_RS24360 () | 1629410..1629946 | - | 537 | WP_108653691.1 | ClbS/DfsB family four-helix bundle protein | - |
| EHC66_RS24365 () | 1630014..1630082 | - | 69 | WP_080254664.1 | DUF3265 domain-containing protein | - |
| EHC66_RS24370 () | 1630157..1630405 | + | 249 | WP_025611568.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| EHC66_RS24375 () | 1630395..1630685 | + | 291 | WP_108653690.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| EHC66_RS24380 () | 1630838..1631107 | - | 270 | WP_029865924.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| EHC66_RS24385 () | 1631100..1631354 | - | 255 | WP_029865959.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| EHC66_RS24390 () | 1631456..1631548 | - | 93 | WP_140321407.1 | DUF3265 domain-containing protein | - |
| EHC66_RS24395 () | 1631663..1632631 | + | 969 | WP_159404068.1 | IS30-like element ISVa6 family transposase | - |
| EHC66_RS24400 () | 1633097..1633246 | - | 150 | WP_108654761.1 | DUF3265 domain-containing protein | - |
| EHC66_RS24405 () | 1633221..1633688 | - | 468 | WP_108654760.1 | NUDIX domain-containing protein | - |
| EHC66_RS24410 () | 1633794..1634786 | - | 993 | WP_108654759.1 | hypothetical protein | - |
| EHC66_RS24415 () | 1635500..1636570 | + | 1071 | WP_108653902.1 | hypothetical protein | - |
| EHC66_RS24420 () | 1636703..1637533 | + | 831 | WP_108653901.1 | hypothetical protein | - |
| EHC66_RS24425 () | 1637538..1637867 | + | 330 | WP_031428126.1 | hypothetical protein | - |
| EHC66_RS24430 () | 1638074..1639150 | - | 1077 | WP_159408174.1 | glycerol dehydrogenase | - |
| EHC66_RS24435 () | 1639209..1640609 | - | 1401 | WP_102780305.1 | aldehyde dehydrogenase family protein | - |
| EHC66_RS24440 () | 1640627..1641400 | - | 774 | WP_159408175.1 | FIST C-terminal domain-containing protein | - |
| EHC66_RS24445 () | 1641440..1641817 | - | 378 | WP_159408176.1 | hypothetical protein | - |
| EHC66_RS24450 () | 1642142..1642831 | - | 690 | WP_159404364.1 | EAL domain-containing protein | - |
| EHC66_RS24455 () | 1642842..1643888 | - | 1047 | WP_159408314.1 | hypothetical protein | - |
| EHC66_RS24460 () | 1643885..1644553 | - | 669 | WP_031428140.1 | molecular chaperone | - |
| EHC66_RS24465 () | 1644532..1647009 | - | 2478 | WP_159408315.1 | hypothetical protein | - |
| EHC66_RS24470 () | 1647098..1647643 | - | 546 | WP_031428144.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|