MGE detailed information
MGE type: Conjugative plasmid MGE length: 87297 bp
Accession: NZ_CP034108 Location: 1..87297 Organism: Escherichia coli strain RCAD0514 Replicon: plasmid pRCAD0514EC-2
Accession: NZ_CP034108 Location: 1..87297 Organism: Escherichia coli strain RCAD0514 Replicon: plasmid pRCAD0514EC-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGA47_RS23285 () | 136..528 | - | 393 | WP_000126338.1 | F-type conjugal transfer protein TrbF | - |
| EGA47_RS23290 () | 482..856 | - | 375 | WP_071776752.1 | P-type conjugative transfer protein TrbJ | - |
| EGA47_RS23295 () | 786..1332 | - | 547 | Protein_3 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| EGA47_RS23300 () | 1319..1600 | - | 282 | WP_000549793.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| EGA47_RS23305 () | 1716..2461 | - | 746 | Protein_5 | type-F conjugative transfer system pilin assembly protein TraF | - |
| EGA47_RS23310 () | 2454..2711 | - | 258 | WP_053913405.1 | conjugal transfer protein TrbE | - |
| EGA47_RS23315 () | 2738..4588 | - | 1851 | WP_015059015.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| EGA47_RS23320 () | 4585..5007 | - | 423 | WP_001229309.1 | HNH endonuclease | - |
| EGA47_RS23325 () | 5033..5404 | - | 372 | WP_000056336.1 | hypothetical protein | - |
| EGA47_RS23330 () | 5401..6039 | - | 639 | WP_000087532.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| EGA47_RS23335 () | 6066..6587 | - | 522 | WP_015059014.1 | hypothetical protein | - |
| EGA47_RS23340 () | 6650..6958 | - | 309 | WP_000412447.1 | hypothetical protein | - |
| EGA47_RS23345 () | 6985..7977 | - | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| EGA47_RS23350 () | 7974..8606 | - | 633 | WP_001203735.1 | type-F conjugative transfer system protein TraW | - |
| EGA47_RS23355 () | 8603..8989 | - | 387 | WP_015059013.1 | type-F conjugative transfer system protein TrbI | - |
| EGA47_RS23360 () | 8986..11613 | - | 2628 | WP_015059012.1 | type IV secretion system protein TraC | - |
| EGA47_RS23365 () | 11773..11994 | - | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| EGA47_RS23370 () | 12129..12644 | - | 516 | WP_000809902.1 | type IV conjugative transfer system lipoprotein TraV | - |
| EGA47_RS23375 () | 12641..12892 | - | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| EGA47_RS23380 () | 12904..13134 | - | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| EGA47_RS23385 () | 13088..13678 | - | 591 | WP_000002778.1 | conjugal transfer protein TraP | - |
| EGA47_RS23390 () | 13668..15095 | - | 1428 | WP_032297072.1 | conjugal transfer protein TraB | - |
| EGA47_RS23395 () | 15095..15799 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| EGA47_RS23400 () | 15810..16377 | - | 568 | Protein_24 | type IV conjugative transfer system protein TraE | - |
| EGA47_RS23405 () | 16399..16710 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| EGA47_RS23410 () | 16725..17090 | - | 366 | WP_021519752.1 | type IV conjugative transfer system pilin TraA | - |
| EGA47_RS23415 () | 17124..17351 | - | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| EGA47_RS23420 () | 17445..18131 | - | 687 | WP_015059009.1 | PAS domain-containing protein | - |
| EGA47_RS23425 () | 18322..18705 | - | 384 | WP_000124981.1 | relaxosome protein TraM | - |
| EGA47_RS23430 () | 18982..19629 | + | 648 | WP_015059008.1 | hypothetical protein | VF |
| EGA47_RS23435 () | 19926..20747 | - | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| EGA47_RS23440 () | 20858..21154 | - | 297 | WP_001272251.1 | hypothetical protein | - |
| EGA47_RS23445 () | 21453..21830 | + | 378 | Protein_33 | hypothetical protein | - |
| EGA47_RS23450 () | 22068..22226 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 22270..22494 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 22270..22494 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 22270..22494 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 22270..22494 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| EGA47_RS23455 () | 22306..22485 | + | 180 | WP_001309233.1 | hypothetical protein | - |
| EGA47_RS23460 () | 22506..23225 | - | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| EGA47_RS23465 () | 23222..23656 | - | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| EGA47_RS23470 () | 23725..25748 | - | 2024 | Protein_38 | ParB/RepB/Spo0J family partition protein | - |
| EGA47_RS23475 () | 25809..26042 | - | 234 | WP_000006003.1 | DUF905 family protein | - |
| EGA47_RS23480 () | 26100..26627 | - | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| EGA47_RS23485 () | 27476..28039 | - | 564 | WP_015059007.1 | class I SAM-dependent methyltransferase | - |
| EGA47_RS23490 () | 28085..29446 | - | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| EGA47_RS23495 () | 29498..29728 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| EGA47_RS23500 () | 30766..30957 | - | 192 | WP_001027493.1 | hypothetical protein | - |
| EGA47_RS23505 () | 30954..31376 | - | 423 | WP_000271762.1 | DUF1380 family protein | - |
| EGA47_RS23510 () | 31423..31725 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| EGA47_RS23515 () | 32266..33042 | - | 777 | WP_001383963.1 | hypothetical protein | - |
| EGA47_RS23520 () | 33093..33527 | - | 435 | WP_000274503.1 | DUF1380 family protein | - |
| EGA47_RS23525 () | 33541..33762 | - | 222 | WP_001104881.1 | hypothetical protein | - |
| EGA47_RS23530 () | 33763..34446 | - | 684 | WP_000085883.1 | DNA methylase | - |
| EGA47_RS23535 () | 34523..34816 | - | 294 | WP_032146011.1 | hypothetical protein | - |
| EGA47_RS23540 () | 34963..35925 | + | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| EGA47_RS23545 () | 35928..36278 | + | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| EGA47_RS23550 () | 36401..36682 | - | 282 | WP_001333089.1 | hypothetical protein | - |
| EGA47_RS23555 () | 36810..37044 | - | 235 | Protein_55 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| EGA47_RS23560 () | 38493..38633 | - | 141 | WP_071557810.1 | hypothetical protein | - |
| EGA47_RS23565 () | 38624..39328 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| EGA47_RS23570 () | 39750..40625 | + | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| EGA47_RS23575 () | 40672..41148 | - | 477 | WP_013023839.1 | WbuC family cupin fold metalloprotein | - |
| EGA47_RS23580 () | 41311..42008 | - | 698 | Protein_60 | IS1 family transposase IS1R | Transposase |
| EGA47_RS23585 () | 42183..42926 | - | 744 | Protein_61 | Beta-lactamase TEM | ARG |
| EGA47_RS23590 () | 42976..43680 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| EGA47_RS23595 () | 43806..44561 | - | 756 | WP_012372818.1 | 16S rRNA (guanine(1405)-N(7))-methyltransferase | ARG |
| EGA47_RS23600 () | 44731..45591 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| EGA47_RS23605 () | 45774..46331 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| EGA47_RS23610 () | 46636..47340 | - | 705 | WP_102204227.1 | IS6 family transposase IS15DI | Transposase |
| EGA47_RS23615 () | 47539..47862 | - | 324 | WP_001175594.1 | helix-turn-helix domain-containing protein | - |
| EGA47_RS23620 () | 47967..49004 | + | 1038 | WP_044502555.1 | permease | - |
| EGA47_RS23625 () | 49297..49914 | - | 618 | WP_000521603.1 | hypothetical protein | - |
| EGA47_RS23630 () | 50105..51661 | - | 1557 | WP_024126035.1 | AAA family ATPase | - |
| EGA47_RS23635 () | 51924..52514 | - | 591 | WP_000194575.1 | hypothetical protein | - |
| EGA47_RS23640 () | 52514..52771 | - | 258 | WP_000343085.1 | hypothetical protein | - |
| EGA47_RS23645 () | 53125..55263 | + | 2139 | WP_202181190.1 | AAA family ATPase | - |
| EGA47_RS23650 () | 55425..55841 | - | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| EGA47_RS23655 () | 55838..56068 | - | 231 | WP_001261287.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| EGA47_RS23660 () | 56376..57941 | + | 1566 | WP_000741348.1 | ATP-binding protein | - |
| EGA47_RS23665 () | 57998..58867 | - | 870 | WP_000253407.1 | hypothetical protein | - |
| EGA47_RS23670 () | 58869..59956 | - | 1088 | Protein_78 | transcriptional regulator | - |
| EGA47_RS23675 () | 60254..61186 | - | 933 | WP_000991830.1 | hypothetical protein | - |
| EGA47_RS23680 () | 61190..62185 | - | 996 | WP_000246635.1 | hypothetical protein | - |
| EGA47_RS23685 () | 62865..63215 | + | 351 | WP_000493378.1 | hypothetical protein | - |
| EGA47_RS23690 () | 63266..64009 | + | 744 | WP_000129823.1 | hypothetical protein | - |
| EGA47_RS23695 () | 64006..64782 | + | 777 | WP_000015958.1 | site-specific integrase | - |
| EGA47_RS23700 () | 64840..65097 | - | 258 | WP_000764642.1 | hypothetical protein | - |
| EGA47_RS23705 () | 65226..65330 | - | 105 | WP_032409716.1 | hypothetical protein | - |
| EGA47_RS23710 () | 65560..65748 | + | 189 | WP_000957857.1 | hypothetical protein | - |
| EGA47_RS23715 () | 65758..66957 | + | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| EGA47_RS23720 () | 67121..67279 | - | 159 | WP_047667301.1 | membrane protein | - |
| EGA47_RS23725 () | 68218..69075 | - | 858 | WP_032495102.1 | incFII family plasmid replication initiator RepA | - |
| EGA47_RS23730 () | 69068..69142 | - | 75 | WP_001375168.1 | RepA leader peptide Tap | - |
| EGA47_RS23735 () | 69387..69635 | - | 249 | WP_000083837.1 | replication regulatory protein RepA | - |
| EGA47_RS23740 () | 69919..70068 | - | 150 | WP_001312851.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 70113..70172 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 70113..70172 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 70113..70172 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 70113..70172 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| EGA47_RS23745 () | 70373..70603 | - | 231 | WP_001736714.1 | hypothetical protein | - |
| EGA47_RS23750 () | 70767..71366 | - | 600 | WP_032083981.1 | hypothetical protein | - |
| EGA47_RS23755 () | 71752..71952 | - | 201 | WP_015059022.1 | hypothetical protein | - |
| EGA47_RS23760 () | 72084..72644 | - | 561 | WP_000139328.1 | fertility inhibition protein FinO | - |
| EGA47_RS23765 () | 72699..73445 | - | 747 | WP_000205770.1 | conjugal transfer pilus acetylase TraX | - |
| EGA47_RS23770 () | 73465..78735 | - | 5271 | WP_205962685.1 | Multifunctional conjugation protein TraI | Relaxase |
| EGA47_RS23775 () | 78735..80960 | - | 2226 | WP_000009363.1 | type IV conjugative transfer system coupling protein TraD | - |
| EGA47_RS23780 () | 81011..81553 | - | 543 | WP_089075763.1 | hypothetical protein | - |
| EGA47_RS23785 () | 81950..82681 | - | 732 | WP_021559024.1 | complement resistance protein TraT | - |
| EGA47_RS23790 () | 82706..83227 | - | 522 | WP_000632668.1 | conjugal transfer entry exclusion protein TraS | - |
| EGA47_RS23795 () | 83260..86076 | - | 2817 | WP_015059018.1 | conjugal transfer mating pair stabilization protein TraG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|