MGE detailed information
MGE type: Genomic_island MGE length: 21814 bp
Accession: NZ_CP034060 Location: 614719..636532 Organism: Shigella flexneri strain FDAARGOS_535 Replicon: chromosome
Accession: NZ_CP034060 Location: 614719..636532 Organism: Shigella flexneri strain FDAARGOS_535 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX88_RS04390 (609831) | 609831..610166 | + | 336 | WP_000626187.1 | universal stress protein UspB | - |
| EGX88_RS04395 (610237) | 610237..611736 | - | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| EGX88_RS04400 (611968) | 611968..613167 | + | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| EGX88_RS04405 (613696) | 613696..614393 | + | 698 | WP_227804280.1 | IS1 family transposase | - |
| EGX88_RS04410 (614411) | 614411..614703 | - | 293 | Protein_553 | transposase | - |
| EGX88_RS04415 (614719) | 614719..615993 | + | 1275 | WP_005052544.1 | O-antigen ligase family protein | - |
| EGX88_RS04420 (615993) | 615993..616667 | + | 675 | WP_000245839.1 | helix-turn-helix transcriptional regulator | - |
| EGX88_RS04425 (617195) | 617195..617956 | + | 762 | WP_005090407.1 | Chaperone protein caf1M | VF |
| EGX88_RS04430 (618000) | 618000..619079 | + | 1080 | WP_005052551.1 | F1 capsule-anchoring protein | VF |
| EGX88_RS04445 (620654) | 620654..621694 | + | 1041 | WP_005065168.1 | F1 capsule-anchoring protein | VF |
| EGX88_RS04450 (621745) | 621745..622442 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| EGX88_RS04455 (622460) | 622460..622579 | + | 120 | Protein_561 | fimbrial biogenesis outer membrane usher protein | - |
| EGX88_RS04460 (622718) | 622718..623230 | + | 513 | WP_000751953.1 | hypothetical protein | - |
| EGX88_RS04465 (623337) | 623337..624098 | - | 762 | WP_075332712.1 | Transcriptional regulatory protein TdiR | VF |
| EGX88_RS04470 (624344) | 624344..625108 | + | 765 | WP_000442142.1 | winged helix-turn-helix domain-containing protein | - |
| EGX88_RS04475 (625101) | 625101..625577 | + | 477 | WP_000182502.1 | hypothetical protein | - |
| EGX88_RS04480 (625664) | 625664..626662 | - | 999 | Protein_566 | DUF2776 domain-containing protein | - |
| EGX88_RS04485 (627080) | 627080..628669 | + | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| EGX88_RS04490 (628931) | 628931..630553 | + | 1623 | WP_005065086.1 | DUF4049 domain-containing protein | - |
| EGX88_RS25975 (630743) | 630743..630856 | + | 114 | WP_001296785.1 | protein YhiY | - |
| EGX88_RS04495 (630919) | 630919..631986 | + | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| EGX88_RS04500 (631983) | 631983..634718 | + | 2736 | WP_000149172.1 | Ribosome-associated ATPase | VF |
| EGX88_RS04505 (634718) | 634718..635842 | + | 1125 | WP_001216257.1 | ABC transporter permease | - |
| EGX88_RS04510 (635901) | 635901..636176 | + | 276 | WP_025760846.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| EGX88_RS04515 (636173) | 636173..636532 | + | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| EGX88_RS04520 (636652) | 636652..637053 | - | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| EGX88_RS04525 (637059) | 637059..637865 | - | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| EGX88_RS04530 (637862) | 637862..638626 | - | 765 | WP_001136248.1 | nickel import ATP-binding protein NikD | - |
| EGX88_RS04535 (638626) | 638626..639459 | - | 834 | WP_001008974.1 | nickel ABC transporter permease subunit NikC | - |
| EGX88_RS04540 (639456) | 639456..640400 | - | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.002 |