MGE detailed information
MGE type: Prophage MGE length: 13684 bp
Accession: NZ_CP034060 Location: 2581276..2594959 Organism: Shigella flexneri strain FDAARGOS_535 Replicon: chromosome
Accession: NZ_CP034060 Location: 2581276..2594959 Organism: Shigella flexneri strain FDAARGOS_535 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX88_RS14490 (2577789) | 2577789..2578535 | + | 747 | WP_005050098.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| EGX88_RS14495 (2578624) | 2578624..2579310 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| EGX88_RS14500 (2579488) | 2579488..2579691 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| EGX88_RS14505 (2579727) | 2579727..2581187 | - | 1461 | WP_000527804.1 | mannitol dehydrogenase family protein | - |
| EGX88_RS14510 (2581276) | 2581276..2582295 | - | 1020 | Protein_2485 | MHS family MFS transporter YdfJ | - |
| EGX88_RS14515 (2582357) | 2582357..2583513 | + | 1157 | WP_134797129.1 | IS3 family transposase IS600 | Transposase |
| EGX88_RS14520 (2583538) | 2583538..2583717 | - | 180 | WP_000372594.1 | class II holin family protein | - |
| EGX88_RS25715 (2583867) | 2583867..2584028 | - | 162 | WP_001323614.1 | hypothetical protein | - |
| EGX88_RS14525 (2584028) | 2584028..2584213 | - | 186 | Protein_2489 | DUF1737 domain-containing protein | - |
| EGX88_RS14530 (2584473) | 2584473..2584808 | + | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| EGX88_RS14535 (2585089) | 2585089..2585197 | - | 109 | Protein_2491 | DUF3927 family protein | - |
| EGX88_RS14555 (2586118) | 2586118..2586939 | - | 822 | WP_000762884.1 | antitermination protein | - |
| EGX88_RS14560 (2586954) | 2586954..2587310 | - | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| EGX88_RS14565 (2587323) | 2587323..2588372 | - | 1050 | WP_001265249.1 | DUF968 domain-containing protein | - |
| EGX88_RS14570 (2588374) | 2588374..2588652 | - | 279 | Protein_2495 | hypothetical protein | - |
| EGX88_RS14575 (2588755) | 2588755..2588970 | - | 216 | WP_000980986.1 | hypothetical protein | - |
| EGX88_RS14580 (2589188) | 2589188..2589343 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| EGX88_RS14585 (2589415) | 2589415..2589702 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| EGX88_RS14590 (2589702) | 2589702..2589941 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| EGX88_RS14595 (2589966) | 2589966..2590271 | + | 306 | WP_071818640.1 | hypothetical protein | - |
| EGX88_RS14600 (2590268) | 2590268..2591146 | - | 879 | Protein_2501 | IS3 family transposase IS600 | Transposase |
| EGX88_RS14610 (2591885) | 2591885..2592346 | + | 462 | Protein_2503 | Type 1 fimbrin D-mannose specific adhesin | VF |
| EGX88_RS14615 (2592680) | 2592680..2594959 | + | 2280 | WP_000726665.1 | acid resistance putative oxidoreductase YdeP | - |
| EGX88_RS14620 (2595207) | 2595207..2595410 | + | 204 | WP_000543383.1 | two-component system connector SafA | - |
| EGX88_RS14625 (2595478) | 2595478..2596239 | + | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
| EGX88_RS14630 (2596641) | 2596641..2596787 | + | 147 | Protein_2507 | sulfatase | - |
| EGX88_RS14640 (2597554) | 2597554..2598033 | - | 480 | Protein_2509 | cupin domain-containing protein | - |
| EGX88_RS14645 (2598349) | 2598349..2599113 | + | 765 | WP_000692136.1 | electron transfer flavoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120372 | NZ_CP037923 | 1629251..1643278 | 0.003 |