MGE detailed information
MGE type: Prophage MGE length: 16374 bp
Accession: NZ_CP033510 Location: 4552808..4569181 Organism: Shigella flexneri strain 2016AM-0877 Replicon: chromosome
Accession: NZ_CP033510 Location: 4552808..4569181 Organism: Shigella flexneri strain 2016AM-0877 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EEL47_RS23200 (4548404) | 4548404..4548697 | - | 294 | WP_000081083.1 | ferredoxin family protein | - |
| EEL47_RS23205 (4548694) | 4548694..4549983 | - | 1290 | WP_001278524.1 | FAD-dependent oxidoreductase | - |
| EEL47_RS23210 (4550039) | 4550039..4550977 | - | 939 | WP_000080702.1 | electron transfer flavoprotein subunit alpha | - |
| EEL47_RS23215 (4550997) | 4550997..4551761 | - | 765 | WP_000692136.1 | electron transfer flavoprotein | - |
| EEL47_RS23220 (4552080) | 4552080..4552559 | + | 480 | Protein_4429 | cupin domain-containing protein | - |
| EEL47_RS23225 (4552614) | 4552614..4553311 | + | 698 | WP_227804325.1 | IS1 family transposase IS1X2 | Transposase |
| EEL47_RS23230 (4553305) | 4553305..4553472 | - | 168 | WP_005062520.1 | hypothetical protein | - |
| EEL47_RS23235 (4553874) | 4553874..4554635 | - | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
| EEL47_RS23240 (4554703) | 4554703..4554906 | - | 204 | WP_000543395.1 | two-component system connector SafA | - |
| EEL47_RS23245 (4555153) | 4555153..4557432 | - | 2280 | WP_000726666.1 | acid resistance putative oxidoreductase YdeP | - |
| EEL47_RS23250 (4557766) | 4557766..4558515 | - | 750 | Protein_4435 | Type 1 fimbrin D-mannose specific adhesin | VF |
| EEL47_RS23255 (4558571) | 4558571..4559268 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| EEL47_RS23260 (4559284) | 4559284..4560189 | + | 906 | Protein_4437 | IS3 family transposase ISSd1 | Transposase |
| EEL47_RS23265 (4560214) | 4560214..4560393 | - | 180 | WP_000372594.1 | class II holin family protein | - |
| EEL47_RS25840 (4560543) | 4560543..4560704 | - | 162 | WP_001323614.1 | hypothetical protein | - |
| EEL47_RS23270 (4560704) | 4560704..4560889 | - | 186 | Protein_4440 | DUF1737 domain-containing protein | - |
| EEL47_RS23275 (4561149) | 4561149..4561484 | + | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| EEL47_RS23280 (4561765) | 4561765..4561873 | - | 109 | Protein_4442 | DUF3927 family protein | - |
| EEL47_RS23300 (4562794) | 4562794..4563615 | - | 822 | WP_000762882.1 | antitermination protein | - |
| EEL47_RS23305 (4563630) | 4563630..4563986 | - | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| EEL47_RS23310 (4563999) | 4563999..4565048 | - | 1050 | WP_001265249.1 | DUF968 domain-containing protein | - |
| EEL47_RS23315 (4565050) | 4565050..4565328 | - | 279 | Protein_4446 | hypothetical protein | - |
| EEL47_RS23320 (4565395) | 4565395..4565646 | - | 252 | WP_000980987.1 | protein Rem | - |
| EEL47_RS23325 (4565864) | 4565864..4566019 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| EEL47_RS23330 (4566091) | 4566091..4566378 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| EEL47_RS23335 (4566378) | 4566378..4566617 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| EEL47_RS23340 (4566642) | 4566642..4566947 | + | 306 | WP_071818640.1 | hypothetical protein | - |
| EEL47_RS23350 (4568162) | 4568162..4569181 | + | 1020 | Protein_4453 | MHS family MFS transporter YdfJ | - |
| EEL47_RS23355 (4569270) | 4569270..4570730 | + | 1461 | WP_000527804.1 | mannitol dehydrogenase family protein | - |
| EEL47_RS23360 (4570766) | 4570766..4570969 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| EEL47_RS23365 (4571147) | 4571147..4571833 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| EEL47_RS23370 (4571922) | 4571922..4572668 | - | 747 | WP_005050098.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120372 | NZ_CP037923 | 1629251..1643278 | 0.006 |