MGE detailed information
MGE type: Genomic_island MGE length: 19745 bp
Accession: NZ_CP033510 Location: 1849566..1869310 Organism: Shigella flexneri strain 2016AM-0877 Replicon: chromosome
Accession: NZ_CP033510 Location: 1849566..1869310 Organism: Shigella flexneri strain 2016AM-0877 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EEL47_RS09545 (1845698) | 1845698..1846642 | + | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
| EEL47_RS09550 (1846639) | 1846639..1847472 | + | 834 | WP_001008973.1 | nickel ABC transporter permease subunit NikC | - |
| EEL47_RS09555 (1847472) | 1847472..1848236 | + | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| EEL47_RS09560 (1848233) | 1848233..1849039 | + | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| EEL47_RS09565 (1849045) | 1849045..1849446 | + | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| EEL47_RS09570 (1849566) | 1849566..1849925 | - | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| EEL47_RS09575 (1849922) | 1849922..1850197 | - | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| EEL47_RS09580 (1850256) | 1850256..1851380 | - | 1125 | WP_001216257.1 | ABC transporter permease | - |
| EEL47_RS09585 (1851380) | 1851380..1854115 | - | 2736 | WP_000149170.1 | Ribosome-associated ATPase | VF |
| EEL47_RS09590 (1854112) | 1854112..1855179 | - | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| EEL47_RS26225 (1855242) | 1855242..1855355 | - | 114 | WP_001296785.1 | protein YhiY | - |
| EEL47_RS09595 (1855545) | 1855545..1857167 | - | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| EEL47_RS09600 (1857429) | 1857429..1859018 | - | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| EEL47_RS09605 (1859435) | 1859435..1860433 | + | 999 | Protein_1822 | DUF2776 domain-containing protein | - |
| EEL47_RS09610 (1860520) | 1860520..1860996 | - | 477 | WP_000182502.1 | hypothetical protein | - |
| EEL47_RS09615 (1860989) | 1860989..1861753 | - | 765 | WP_000442140.1 | winged helix-turn-helix domain-containing protein | - |
| EEL47_RS09620 (1861999) | 1861999..1862760 | + | 762 | Protein_1825 | Transcriptional regulatory protein TdiR | VF |
| EEL47_RS09625 (1862867) | 1862867..1863379 | - | 513 | WP_000751953.1 | hypothetical protein | - |
| EEL47_RS09630 (1863518) | 1863518..1864666 | - | 1149 | WP_005052604.1 | F1 capsule-anchoring protein | VF |
| EEL47_RS09635 (1864758) | 1864758..1865986 | + | 1229 | WP_167547300.1 | IS3 family transposase IS2 | Transposase |
| EEL47_RS09645 (1866225) | 1866225..1867304 | - | 1080 | WP_005052551.1 | F1 capsule-anchoring protein | VF |
| EEL47_RS09650 (1867348) | 1867348..1868109 | - | 762 | WP_005090407.1 | Chaperone protein caf1M | VF |
| EEL47_RS09655 (1868576) | 1868576..1869310 | - | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| EEL47_RS09660 (1869310) | 1869310..1870584 | - | 1275 | WP_005052544.1 | O-antigen ligase family protein | - |
| EEL47_RS09665 (1870600) | 1870600..1870892 | + | 293 | Protein_1833 | transposase | - |
| EEL47_RS09675 (1872136) | 1872136..1873335 | - | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.003 |