MGE detailed information
MGE type: Conjugative plasmid MGE length: 61441 bp
Accession: NZ_CP032810 Location: 1..61441 Organism: Escherichia coli strain ERL04-3476 Replicon: plasmid pERL04-3476-2
Accession: NZ_CP032810 Location: 1..61441 Organism: Escherichia coli strain ERL04-3476 Replicon: plasmid pERL04-3476-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8Z68_RS28900 () | 1..261 | + | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
| D8Z68_RS28910 () | 486..560 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| D8Z68_RS28915 () | 553..1410 | + | 858 | WP_000130647.1 | incFII family plasmid replication initiator RepA | - |
| D8Z68_RS29565 () | 2111..2251 | + | 141 | WP_001333237.1 | hypothetical protein | - |
| D8Z68_RS29570 () | 2349..2492 | + | 144 | WP_157911571.1 | hypothetical protein | - |
| D8Z68_RS28925 () | 2576..2620 | + | 45 | WP_120795371.1 | protein YabR | - |
| D8Z68_RS28930 () | 2775..3035 | - | 261 | Protein_6 | transcriptional regulator LeuO | - |
| D8Z68_RS28935 () | 3077..3343 | + | 267 | Protein_7 | amino acid permease | - |
| D8Z68_RS28940 () | 3568..3960 | - | 393 | WP_064578886.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| D8Z68_RS28945 () | 4233..4610 | - | 378 | Protein_9 | transposase | - |
| D8Z68_RS28950 () | 4666..5363 | + | 698 | Protein_10 | IS1 family transposase | - |
| D8Z68_RS28965 () | 6574..7271 | - | 698 | Protein_11 | IS1 family transposase | - |
| D8Z68_RS28970 () | 7589..7823 | + | 235 | Protein_12 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| D8Z68_RS28975 () | 7951..8232 | + | 282 | WP_001333089.1 | hypothetical protein | - |
| D8Z68_RS28980 () | 8355..8705 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| D8Z68_RS28985 () | 8708..9670 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| D8Z68_RS28990 () | 9817..10110 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| D8Z68_RS29000 () | 10187..10870 | + | 684 | WP_000085883.1 | DNA methylase | - |
| D8Z68_RS29005 () | 10871..11092 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| D8Z68_RS29010 () | 11106..11540 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| D8Z68_RS29575 () | 11591..12367 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| D8Z68_RS29025 () | 12908..13210 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| D8Z68_RS29030 () | 13257..13679 | + | 423 | WP_000271722.1 | DUF1380 family protein | - |
| D8Z68_RS29035 () | 13676..13867 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| D8Z68_RS29580 () | 14088..14379 | - | 292 | Protein_24 | hypothetical protein | - |
| D8Z68_RS29050 () | 14921..15151 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| D8Z68_RS29055 () | 15203..16564 | + | 1362 | WP_023910418.1 | DUF3560 domain-containing protein | - |
| D8Z68_RS29060 () | 16611..17174 | + | 564 | WP_001311069.1 | class I SAM-dependent methyltransferase | - |
| D8Z68_RS29075 () | 17478..17702 | - | 225 | WP_001427866.1 | hypothetical protein | - |
| D8Z68_RS29095 () | 18044..18571 | + | 528 | WP_000290793.1 | single-stranded DNA-binding protein | - |
| D8Z68_RS29100 () | 18627..18860 | + | 234 | WP_000006004.1 | DUF905 domain-containing protein | - |
| D8Z68_RS29105 () | 18919..20877 | + | 1959 | WP_001145469.1 | ParB/RepB/Spo0J family partition protein | - |
| D8Z68_RS29110 () | 20932..21366 | + | 435 | WP_000845901.1 | conjugation system SOS inhibitor PsiB | - |
| D8Z68_RS29115 () | 21363..22082 | + | 720 | WP_001276234.1 | plasmid SOS inhibition protein A | - |
| D8Z68_RS29585 () | 22094..22282 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - () | 22094..22318 | + | 225 | NuclAT_0 | - | - |
| - () | 22094..22318 | + | 225 | NuclAT_0 | - | - |
| - () | 22094..22318 | + | 225 | NuclAT_0 | - | - |
| - () | 22094..22318 | + | 225 | NuclAT_0 | - | - |
| - () | 22251..22316 | + | 66 | - | - | Antitoxin Detail |
| D8Z68_RS29120 () | 22362..22520 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| D8Z68_RS29590 () | 22874..23098 | - | 225 | WP_001340580.1 | hypothetical protein | - |
| D8Z68_RS29145 () | 23439..23726 | + | 288 | WP_000107537.1 | hypothetical protein | - |
| D8Z68_RS29150 () | 23847..24668 | + | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| D8Z68_RS29155 () | 24965..25612 | - | 648 | WP_000614936.1 | transglycosylase SLT domain-containing protein | - |
| D8Z68_RS29160 () | 25889..26272 | + | 384 | WP_000124983.1 | relaxosome protein TraM | - |
| D8Z68_RS29165 () | 26463..27149 | + | 687 | WP_000332484.1 | PAS domain-containing protein | - |
| D8Z68_RS29170 () | 27243..27470 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| D8Z68_RS29175 () | 27504..27863 | + | 360 | WP_000340272.1 | type IV conjugative transfer system pilin TraA | - |
| D8Z68_RS29180 () | 27878..28189 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| D8Z68_RS29185 () | 28211..28777 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| D8Z68_RS29190 () | 28788..29492 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| D8Z68_RS29195 () | 29492..30919 | + | 1428 | WP_000146668.1 | conjugal transfer protein TraB | - |
| D8Z68_RS29200 () | 30909..31481 | + | 573 | WP_024179131.1 | conjugal transfer protein TraP | - |
| D8Z68_RS29205 () | 31478..31795 | + | 318 | WP_001057292.1 | conjugal transfer protein TrbD | - |
| D8Z68_RS29210 () | 31792..32043 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| D8Z68_RS29215 () | 32040..32555 | + | 516 | WP_000809902.1 | type IV conjugative transfer system lipoprotein TraV | - |
| D8Z68_RS29220 () | 32690..32911 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| D8Z68_RS29225 () | 33071..35698 | + | 2628 | WP_001064268.1 | type IV secretion system protein TraC | - |
| D8Z68_RS29230 () | 35695..36081 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| D8Z68_RS29235 () | 36078..36710 | + | 633 | WP_001203746.1 | type-F conjugative transfer system protein TraW | - |
| D8Z68_RS29240 () | 36707..37699 | + | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| D8Z68_RS29245 () | 37725..38186 | + | 462 | WP_000277845.1 | hypothetical protein | - |
| D8Z68_RS29250 () | 38216..38668 | + | 453 | WP_000069427.1 | hypothetical protein | - |
| D8Z68_RS29255 () | 38696..39334 | + | 639 | WP_001104248.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| D8Z68_RS29260 () | 39331..41139 | + | 1809 | WP_136790631.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| D8Z68_RS29265 () | 41166..41423 | + | 258 | WP_000864325.1 | conjugal transfer protein TrbE | - |
| D8Z68_RS29270 () | 41416..42159 | + | 744 | WP_001030376.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| D8Z68_RS29275 () | 42175..42522 | + | 348 | WP_001287893.1 | conjugal transfer protein TrbA | - |
| D8Z68_RS29280 () | 42641..42925 | + | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| D8Z68_RS29285 () | 42912..43457 | + | 546 | WP_000052614.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| D8Z68_RS29290 () | 43387..43749 | + | 363 | WP_023181029.1 | P-type conjugative transfer protein TrbJ | - |
| D8Z68_RS29295 () | 43749..45122 | + | 1374 | WP_021530364.1 | conjugal transfer protein TraH | - |
| D8Z68_RS29300 () | 45119..47944 | + | 2826 | WP_151583384.1 | conjugal transfer mating pair stabilization protein TraG | - |
| D8Z68_RS29305 () | 47941..48450 | + | 510 | WP_000628099.1 | conjugal transfer entry exclusion protein TraS | - |
| D8Z68_RS29310 () | 48464..49195 | + | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| D8Z68_RS29315 () | 49448..51655 | + | 2208 | WP_097416344.1 | type IV conjugative transfer system coupling protein TraD | - |
| D8Z68_RS29320 () | 51655..56925 | + | 5271 | WP_151583385.1 | conjugative transfer relaxase/helicase TraI | - |
| D8Z68_RS29325 () | 56945..57691 | + | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| D8Z68_RS29330 () | 57750..58610 | + | 861 | WP_000704523.1 | alpha/beta hydrolase | - |
| D8Z68_RS29335 () | 58713..59273 | + | 561 | WP_000139321.1 | fertility inhibition protein FinO | - |
| D8Z68_RS29340 () | 59402..59614 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| D8Z68_RS29345 () | 59858..60319 | + | 462 | WP_001233849.1 | thermonuclease family protein | - |
| D8Z68_RS29350 () | 60365..60574 | + | 210 | WP_001333231.1 | hemolysin expression modulator Hha | - |
| D8Z68_RS29355 () | 60612..61202 | + | 591 | WP_021530390.1 | DUF2726 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|