MGE detailed information
MGE type: Genomic_island MGE length: 16637 bp
Accession: NZ_CP032513 Location: 3593062..3609698 Organism: Shigella flexneri strain SFL1520 Replicon: chromosome
Accession: NZ_CP032513 Location: 3593062..3609698 Organism: Shigella flexneri strain SFL1520 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D6T62_RS19010 (3588230) | 3588230..3588565 | + | 336 | WP_000626187.1 | universal stress protein UspB | - |
| D6T62_RS19015 (3588636) | 3588636..3590135 | - | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| D6T62_RS19020 (3590367) | 3590367..3591566 | + | 1200 | WP_000439150.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| D6T62_RS24620 (3592343) | 3592343..3593044 | + | 702 | WP_252739192.1 | fimbria/pilus outer membrane usher protein | - |
| D6T62_RS19045 (3594619) | 3594619..3595767 | + | 1149 | WP_005072015.1 | F1 capsule-anchoring protein | VF |
| D6T62_RS19050 (3595906) | 3595906..3596418 | + | 513 | WP_000751953.1 | hypothetical protein | - |
| D6T62_RS19055 (3596525) | 3596525..3597286 | - | 762 | WP_167701224.1 | LuxR C-terminal-related transcriptional regulator | - |
| D6T62_RS19060 (3597533) | 3597533..3598297 | + | 765 | WP_000442143.1 | winged helix-turn-helix domain-containing protein | - |
| D6T62_RS24625 (3598322) | 3598322..3598744 | + | 423 | WP_252997120.1 | hypothetical protein | - |
| D6T62_RS19070 (3598831) | 3598831..3599829 | - | 999 | Protein_3650 | DUF2776 domain-containing protein | - |
| D6T62_RS19075 (3600246) | 3600246..3601835 | + | 1590 | WP_005072010.1 | DUF4049 domain-containing protein | - |
| D6T62_RS19080 (3602097) | 3602097..3603719 | + | 1623 | WP_005072008.1 | DUF4049 domain-containing protein | - |
| D6T62_RS24630 (3603909) | 3603909..3604022 | + | 114 | WP_214282776.1 | protein YhiY | - |
| D6T62_RS19085 (3604085) | 3604085..3605152 | + | 1068 | WP_000361474.1 | HlyD family secretion protein | - |
| D6T62_RS19090 (3605149) | 3605149..3607884 | + | 2736 | WP_000149173.1 | Ribosome-associated ATPase | VF |
| D6T62_RS19095 (3607884) | 3607884..3609008 | + | 1125 | WP_005072005.1 | ABC transporter permease | - |
| D6T62_RS19100 (3609067) | 3609067..3609342 | + | 276 | WP_001259385.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| D6T62_RS19105 (3609339) | 3609339..3609698 | + | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| D6T62_RS19110 (3609818) | 3609818..3610219 | - | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| D6T62_RS19115 (3610225) | 3610225..3611031 | - | 807 | WP_000173672.1 | nickel import ATP-binding protein NikE | - |
| D6T62_RS19120 (3611028) | 3611028..3611792 | - | 765 | WP_001136248.1 | nickel import ATP-binding protein NikD | - |
| D6T62_RS19125 (3611792) | 3611792..3612625 | - | 834 | WP_001008948.1 | nickel ABC transporter permease subunit NikC | - |
| D6T62_RS19130 (3612622) | 3612622..3613566 | - | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.008 |