MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 74560 bp
Accession: NZ_CP032447 Location: 1..74560 Organism: Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69840 Replicon: plasmid pSDU1-USMARC-69840
Accession: NZ_CP032447 Location: 1..74560 Organism: Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69840 Replicon: plasmid pSDU1-USMARC-69840
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DZA57_RS25920 () | 956..1123 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| DZA57_RS24740 () | 1086..1853 | - | 768 | WP_001575487.1 | virulence protein SpvA | - |
| DZA57_RS24745 () | 2027..2191 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| DZA57_RS24750 () | 2365..3258 | - | 894 | WP_000346692.1 | virulence genes transcriptional activator SpvR | - |
| DZA57_RS24755 () | 3865..4902 | + | 1038 | WP_001121398.1 | IS630 family transposase | - |
| DZA57_RS24760 () | 5091..6116 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| DZA57_RS24765 () | 6049..7713 | - | 1665 | WP_000098783.1 | IS481 family transposase | - |
| DZA57_RS24770 () | 7697..8257 | - | 561 | WP_001240330.1 | recombinase family protein | - |
| DZA57_RS24775 () | 8464..9204 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| DZA57_RS24785 () | 9858..10346 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| DZA57_RS24790 () | 10605..11720 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| DZA57_RS24795 () | 11806..12222 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| DZA57_RS24800 () | 12406..12741 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| DZA57_RS24805 () | 12798..13364 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| DZA57_RS24810 () | 13396..14338 | - | 943 | Protein_15 | Rpn family recombination-promoting nuclease/putative transposase | - |
| DZA57_RS24815 () | 14731..15351 | + | 621 | WP_000864788.1 | ParA family protein | - |
| DZA57_RS24820 () | 15403..15633 | + | 231 | WP_000051066.1 | partitioning protein | - |
| DZA57_RS24835 () | 16272..16625 | - | 354 | WP_001675596.1 | hypothetical protein | - |
| DZA57_RS24840 () | 16762..17208 | - | 447 | WP_001074381.1 | hypothetical protein | - |
| DZA57_RS24845 () | 17248..18084 | - | 837 | WP_001575533.1 | replication initiation protein | - |
| DZA57_RS24855 () | 19320..19571 | + | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| DZA57_RS24860 () | 19561..19842 | + | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DZA57_RS24865 () | 19988..20311 | + | 324 | WP_001181909.1 | hypothetical protein | - |
| DZA57_RS24870 () | 20356..20601 | + | 246 | WP_000356542.1 | hypothetical protein | - |
| DZA57_RS24875 () | 20591..20806 | + | 216 | WP_001180117.1 | hypothetical protein | - |
| DZA57_RS24880 () | 20899..21228 | + | 330 | WP_000866650.1 | hypothetical protein | - |
| DZA57_RS24885 () | 21271..21450 | + | 180 | WP_001575529.1 | hypothetical protein | - |
| DZA57_RS24890 () | 21472..21669 | + | 198 | WP_001675595.1 | hypothetical protein | - |
| DZA57_RS24895 () | 21682..21954 | + | 273 | WP_000160399.1 | hypothetical protein | - |
| DZA57_RS24905 () | 22280..22825 | + | 546 | WP_000757691.1 | hypothetical protein | - |
| DZA57_RS24910 () | 22828..24009 | + | 1182 | WP_000539536.1 | relaxase/mobilization nuclease domain-containing protein | - |
| DZA57_RS24915 () | 24355..24873 | + | 519 | WP_001675951.1 | ActX protein | - |
| DZA57_RS24920 () | 24803..25015 | + | 213 | WP_000125172.1 | hypothetical protein | - |
| DZA57_RS24925 () | 25048..25695 | + | 648 | WP_000953526.1 | lytic transglycosylase domain-containing protein | - |
| DZA57_RS24930 () | 25673..25969 | + | 297 | WP_000916182.1 | TrbC/VirB2 family protein | - |
| DZA57_RS24935 () | 25988..28740 | + | 2753 | Protein_36 | conjugal transfer protein | - |
| DZA57_RS24940 () | 28751..29509 | + | 759 | WP_000744198.1 | pilus assembly protein | - |
| DZA57_RS24945 () | 29510..29737 | + | 228 | WP_000835348.1 | EexN family lipoprotein | - |
| DZA57_RS24950 () | 29747..30880 | + | 1134 | WP_000513456.1 | type IV secretion system protein | - |
| DZA57_RS24955 () | 31125..31838 | + | 714 | WP_000394613.1 | type IV secretion system protein | - |
| DZA57_RS24960 () | 31843..32772 | + | 930 | WP_000783377.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| DZA57_RS24965 () | 32769..33974 | + | 1206 | WP_000139139.1 | TrbI/VirB10 family protein | - |
| DZA57_RS24970 () | 33976..35006 | + | 1031 | Protein_43 | P-type DNA transfer ATPase VirB11 | - |
| DZA57_RS24975 () | 35009..36844 | + | 1836 | WP_000053823.1 | type IV secretory system conjugative DNA transfer family protein | - |
| DZA57_RS24980 () | 36841..37254 | + | 414 | WP_001575522.1 | hypothetical protein | - |
| DZA57_RS24985 () | 37251..37553 | + | 303 | WP_015059377.1 | KikA protein | - |
| DZA57_RS25925 () | 37714..37860 | + | 147 | WP_000382583.1 | hypothetical protein | - |
| DZA57_RS24990 () | 37864..38439 | + | 576 | WP_001198970.1 | hypothetical protein | - |
| DZA57_RS24995 () | 38444..40597 | + | 2154 | WP_001235753.1 | type IA DNA topoisomerase | - |
| DZA57_RS25000 () | 40594..40800 | + | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| DZA57_RS25005 () | 40816..41250 | + | 435 | WP_001293135.1 | H-NS histone family protein | - |
| DZA57_RS25010 () | 41913..42398 | + | 486 | WP_001281416.1 | Abi family protein | - |
| DZA57_RS25015 () | 42557..43684 | - | 1128 | WP_000156234.1 | hypothetical protein | - |
| DZA57_RS25020 () | 44762..45406 | - | 645 | WP_000203397.1 | recombinase family protein | - |
| DZA57_RS25025 () | 45480..49736 | + | 4257 | Protein_55 | conjugative transfer relaxase/helicase TraI | - |
| DZA57_RS25030 () | 49756..50496 | + | 741 | WP_000177628.1 | conjugal transfer pilus acetylase TraX | - |
| DZA57_RS25035 () | 50551..51114 | + | 564 | WP_000129019.1 | fertility inhibition protein FinO | - |
| DZA57_RS25040 () | 51231..51683 | + | 453 | WP_000477656.1 | hypothetical protein | - |
| DZA57_RS25045 () | 51849..52292 | + | 444 | Protein_59 | phospholipase | - |
| DZA57_RS25050 () | 52471..52737 | + | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
| DZA57_RS25060 () | 52985..53062 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| DZA57_RS25065 () | 53043..53924 | + | 882 | WP_001675606.1 | incFII family plasmid replication initiator RepA | - |
| DZA57_RS25075 () | 54719..55113 | - | 395 | Protein_63 | IS66 family transposase | - |
| DZA57_RS25080 () | 55143..55316 | - | 174 | WP_001675604.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| DZA57_RS25930 () | 55471..55668 | - | 198 | WP_001675602.1 | transposase | - |
| DZA57_RS25090 () | 55963..56757 | - | 795 | WP_001575508.1 | hypothetical protein | - |
| DZA57_RS25095 () | 56793..57452 | - | 660 | WP_001575507.1 | hypothetical protein | - |
| DZA57_RS25100 () | 58911..59183 | + | 273 | WP_001178538.1 | hypothetical protein | - |
| DZA57_RS25105 () | 59419..60216 | + | 798 | WP_000704721.1 | F4 (K88) fimbria minor subunit FaeH | - |
| DZA57_RS25110 () | 60244..61008 | + | 765 | WP_000827659.1 | K88 minor fimbrial subunit faeI | - |
| DZA57_RS25115 () | 60995..61270 | + | 276 | WP_001020576.1 | hypothetical protein | - |
| DZA57_RS25120 () | 61270..61983 | + | 714 | WP_000801115.1 | hypothetical protein | - |
| DZA57_RS25130 () | 62108..62692 | + | 585 | WP_001575501.1 | hypothetical protein | - |
| DZA57_RS25135 () | 62765..62977 | + | 213 | WP_000063794.1 | hypothetical protein | - |
| DZA57_RS25935 () | 63238..63399 | + | 162 | WP_001816720.1 | hypothetical protein | - |
| DZA57_RS25140 () | 63425..64273 | + | 849 | WP_000175391.1 | SdiA-regulated domain-containing protein | - |
| DZA57_RS25155 () | 64843..65271 | - | 429 | WP_000812999.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| DZA57_RS25160 () | 65268..65498 | - | 231 | WP_001261283.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| DZA57_RS25165 () | 66243..66461 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| DZA57_RS25170 () | 66463..66768 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| DZA57_RS25175 () | 66770..67060 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| DZA57_RS25180 () | 67057..67578 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| DZA57_RS25185 () | 67613..68395 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| DZA57_RS25190 () | 68404..69116 | + | 713 | Protein_84 | EAL domain-containing protein | - |
| DZA57_RS25195 () | 69120..69629 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| DZA57_RS25200 () | 69623..69959 | + | 337 | Protein_86 | hypothetical protein | - |
| DZA57_RS25205 () | 70171..70731 | + | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| DZA57_RS25210 () | 70798..71157 | - | 360 | WP_001675600.1 | helix-turn-helix domain-containing protein | - |
| DZA57_RS25215 () | 71214..71639 | + | 426 | WP_000064919.1 | IS200/IS605 family transposase | - |
| DZA57_RS25220 () | 71766..72416 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| DZA57_RS25225 () | 72677..73402 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|