MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 74461 bp
Accession: NZ_CP032392 Location: 1..74461 Organism: Salmonella enterica subsp. enterica serovar Dublin strain CVM 34981 Replicon: plasmid p34981_2
Accession: NZ_CP032392 Location: 1..74461 Organism: Salmonella enterica subsp. enterica serovar Dublin strain CVM 34981 Replicon: plasmid p34981_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5F99_RS25715 () | 1345..1833 | + | 489 | WP_001135407.1 | hypothetical protein | - |
| D5F99_RS25725 () | 2488..3228 | + | 741 | WP_001541566.1 | carbonic anhydrase | - |
| D5F99_RS25730 () | 3435..3995 | + | 561 | WP_001240330.1 | recombinase family protein | - |
| D5F99_RS25735 () | 3979..5643 | + | 1665 | WP_000098783.1 | IS481 family transposase | - |
| D5F99_RS25740 () | 5576..6601 | + | 1026 | WP_001576625.1 | ExeA family protein | - |
| D5F99_RS25745 () | 6790..7827 | - | 1038 | WP_001121398.1 | IS630 family transposase | - |
| D5F99_RS25750 () | 8434..9327 | + | 894 | WP_000346692.1 | virulence genes transcriptional activator SpvR | - |
| D5F99_RS25755 () | 9501..9665 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| D5F99_RS25760 () | 9839..10606 | + | 768 | WP_001575487.1 | virulence protein SpvA | - |
| D5F99_RS26380 () | 10569..10736 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| D5F99_RS25765 () | 10788..12569 | + | 1782 | WP_001675599.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| D5F99_RS25770 () | 12850..13575 | + | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| D5F99_RS25775 () | 13836..14486 | + | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| D5F99_RS25780 () | 14613..15038 | - | 426 | WP_000064919.1 | IS200/IS605 family transposase | - |
| D5F99_RS25785 () | 15095..15454 | + | 360 | WP_001675600.1 | helix-turn-helix domain-containing protein | - |
| D5F99_RS25790 () | 15521..16081 | - | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| D5F99_RS25795 () | 16293..16629 | - | 337 | Protein_17 | hypothetical protein | - |
| D5F99_RS25800 () | 16623..17132 | - | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| D5F99_RS25805 () | 17136..17848 | - | 713 | Protein_19 | EAL domain-containing protein | - |
| D5F99_RS25810 () | 17857..18639 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| D5F99_RS25815 () | 18674..19195 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| D5F99_RS25820 () | 19192..19482 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| D5F99_RS25825 () | 19484..19789 | - | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| D5F99_RS25830 () | 19791..20009 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| D5F99_RS25835 () | 20754..20984 | + | 231 | WP_001261283.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| D5F99_RS25840 () | 20981..21409 | + | 429 | WP_000812999.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| D5F99_RS25855 () | 21979..22827 | - | 849 | WP_000175391.1 | SdiA-regulated domain-containing protein | - |
| D5F99_RS26385 () | 22853..23014 | - | 162 | WP_001816720.1 | hypothetical protein | - |
| D5F99_RS25860 () | 23275..23487 | - | 213 | WP_000063794.1 | hypothetical protein | - |
| D5F99_RS25865 () | 23560..24144 | - | 585 | WP_001575501.1 | hypothetical protein | - |
| D5F99_RS25875 () | 24269..24982 | - | 714 | WP_000801115.1 | hypothetical protein | - |
| D5F99_RS25880 () | 24982..25257 | - | 276 | WP_001020576.1 | hypothetical protein | - |
| D5F99_RS25885 () | 25244..26008 | - | 765 | WP_000827659.1 | K88 minor fimbrial subunit faeI | - |
| D5F99_RS25890 () | 26036..26833 | - | 798 | WP_000704721.1 | F4 (K88) fimbria minor subunit FaeH | - |
| D5F99_RS25895 () | 27069..27341 | - | 273 | WP_001178538.1 | hypothetical protein | - |
| D5F99_RS25900 () | 28800..29459 | + | 660 | WP_001575507.1 | hypothetical protein | - |
| D5F99_RS25905 () | 29495..30289 | + | 795 | WP_001575508.1 | hypothetical protein | - |
| D5F99_RS26390 () | 30584..30781 | + | 198 | WP_001675602.1 | transposase | - |
| D5F99_RS25915 () | 30936..31109 | + | 174 | WP_001675604.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| D5F99_RS25920 () | 31139..31533 | + | 395 | Protein_40 | transposase | - |
| D5F99_RS25930 () | 32227..33108 | - | 882 | WP_001675606.1 | incFII family plasmid replication initiator RepA | - |
| D5F99_RS25935 () | 33089..33166 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| D5F99_RS25945 () | 33414..33680 | - | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
| D5F99_RS25950 () | 33859..34302 | - | 444 | Protein_44 | phospholipase | - |
| D5F99_RS25955 () | 34468..34920 | - | 453 | WP_000477656.1 | hypothetical protein | - |
| D5F99_RS25960 () | 35037..35600 | - | 564 | WP_000129019.1 | fertility inhibition protein FinO | - |
| D5F99_RS25965 () | 35655..36395 | - | 741 | WP_000177628.1 | conjugal transfer pilus acetylase TraX | - |
| D5F99_RS25970 () | 36415..40671 | - | 4257 | Protein_48 | conjugative transfer relaxase/helicase TraI | - |
| D5F99_RS25975 () | 40745..41389 | + | 645 | WP_000203397.1 | recombinase family protein | - |
| D5F99_RS25980 () | 42467..43594 | + | 1128 | WP_000156234.1 | hypothetical protein | - |
| D5F99_RS25985 () | 43753..44238 | - | 486 | WP_001281416.1 | Abi family protein | - |
| D5F99_RS25990 () | 44901..45335 | - | 435 | WP_001293135.1 | H-NS histone family protein | - |
| D5F99_RS25995 () | 45351..45557 | - | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| D5F99_RS26000 () | 45554..47707 | - | 2154 | WP_001235753.1 | type IA DNA topoisomerase | - |
| D5F99_RS26005 () | 47712..48287 | - | 576 | WP_001198970.1 | hypothetical protein | - |
| D5F99_RS26395 () | 48291..48437 | - | 147 | WP_000382583.1 | hypothetical protein | - |
| D5F99_RS26010 () | 48598..48900 | - | 303 | WP_015059377.1 | KikA protein | - |
| D5F99_RS26015 () | 48897..49310 | - | 414 | WP_001575522.1 | hypothetical protein | - |
| D5F99_RS26020 () | 49307..51142 | - | 1836 | WP_000053823.1 | type IV secretory system conjugative DNA transfer family protein | - |
| D5F99_RS26025 () | 51145..52175 | - | 1031 | Protein_60 | P-type DNA transfer ATPase VirB11 | - |
| D5F99_RS26030 () | 52177..53382 | - | 1206 | WP_000139139.1 | TrbI/VirB10 family protein | - |
| D5F99_RS26035 () | 53379..54308 | - | 930 | WP_000783377.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| D5F99_RS26040 () | 54313..55026 | - | 714 | WP_000394613.1 | type IV secretion system protein | - |
| D5F99_RS26045 () | 55271..56404 | - | 1134 | WP_000513456.1 | type IV secretion system protein | - |
| D5F99_RS26050 () | 56414..56641 | - | 228 | WP_000835348.1 | EexN family lipoprotein | - |
| D5F99_RS26055 () | 56642..57400 | - | 759 | WP_000744198.1 | pilus assembly protein | - |
| D5F99_RS26060 () | 57411..60164 | - | 2754 | WP_001675613.1 | VirB3 family type IV secretion system protein | - |
| D5F99_RS26065 () | 60183..60479 | - | 297 | WP_000916182.1 | TrbC/VirB2 family protein | - |
| D5F99_RS26070 () | 60457..61104 | - | 648 | WP_000953526.1 | lytic transglycosylase domain-containing protein | - |
| D5F99_RS26075 () | 61137..61349 | - | 213 | WP_000125172.1 | hypothetical protein | - |
| D5F99_RS26080 () | 61279..61797 | - | 519 | WP_001675951.1 | ActX protein | - |
| D5F99_RS26085 () | 62143..63324 | - | 1182 | WP_000539536.1 | relaxase/mobilization nuclease domain-containing protein | - |
| D5F99_RS26090 () | 63327..63872 | - | 546 | WP_000757691.1 | hypothetical protein | - |
| D5F99_RS26460 () | 63867..63941 | - | 75 | Protein_74 | DNA distortion polypeptide 3 | - |
| D5F99_RS26100 () | 64198..64470 | - | 273 | WP_000160399.1 | hypothetical protein | - |
| D5F99_RS26105 () | 64483..64632 | - | 150 | WP_000003880.1 | hypothetical protein | - |
| D5F99_RS26110 () | 64702..64881 | - | 180 | WP_119768179.1 | hypothetical protein | - |
| D5F99_RS26115 () | 64924..65253 | - | 330 | WP_000866650.1 | hypothetical protein | - |
| D5F99_RS26120 () | 65346..65561 | - | 216 | WP_001180117.1 | hypothetical protein | - |
| D5F99_RS26125 () | 65551..65796 | - | 246 | WP_000356542.1 | hypothetical protein | - |
| D5F99_RS26130 () | 65841..66164 | - | 324 | WP_001181909.1 | hypothetical protein | - |
| D5F99_RS26135 () | 66310..66591 | - | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| D5F99_RS26140 () | 66581..66832 | - | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| D5F99_RS26150 () | 68068..68904 | + | 837 | WP_001575533.1 | replication initiation protein | - |
| D5F99_RS26155 () | 68944..69390 | + | 447 | WP_001074381.1 | hypothetical protein | - |
| D5F99_RS26160 () | 69458..69880 | + | 423 | WP_000202949.1 | hypothetical protein | - |
| D5F99_RS26175 () | 70519..70749 | - | 231 | WP_000051066.1 | partitioning protein | - |
| D5F99_RS26180 () | 70801..71421 | - | 621 | WP_000864788.1 | ParA family protein | - |
| D5F99_RS26185 () | 71814..72756 | + | 943 | Protein_89 | Rpn family recombination-promoting nuclease/putative transposase | - |
| D5F99_RS26190 () | 72788..73354 | - | 567 | WP_001541562.1 | DUF2913 family protein | - |
| D5F99_RS26195 () | 73411..73746 | - | 336 | WP_001527010.1 | hypothetical protein | - |
| D5F99_RS26200 () | 73930..74346 | - | 417 | WP_001541564.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|