MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 117908 bp
Accession: NZ_CP030289 Location: 1..117908 Organism: Salmonella enterica subsp. enterica serovar Gaminara str. SA20063285 Replicon: plasmid pIncI1.1
Accession: NZ_CP030289 Location: 1..117908 Organism: Salmonella enterica subsp. enterica serovar Gaminara str. SA20063285 Replicon: plasmid pIncI1.1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LFZ12_RS25780 () | 349..537 | + | 189 | WP_000556965.1 | hypothetical protein | - |
| LFZ12_RS24865 () | 521..1321 | + | 801 | WP_023180538.1 | hypothetical protein | - |
| LFZ12_RS24870 () | 1419..4463 | + | 3045 | WP_060629097.1 | conjugal transfer protein | - |
| LFZ12_RS24875 () | 4463..5092 | + | 630 | WP_023180536.1 | hypothetical protein | - |
| LFZ12_RS24880 () | 5050..6252 | + | 1203 | WP_023180535.1 | conjugal transfer protein TraW | - |
| LFZ12_RS24885 () | 6249..6500 | + | 252 | WP_023180534.1 | hypothetical protein | - |
| LFZ12_RS24890 () | 6493..7077 | + | 585 | WP_023180533.1 | conjugal transfer protein TraX | - |
| LFZ12_RS24895 () | 7176..9347 | + | 2172 | WP_023180532.1 | DotA/TraY family protein | - |
| LFZ12_RS24900 () | 9427..10074 | + | 648 | WP_042774173.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| LFZ12_RS24905 () | 10460..10909 | - | 450 | WP_023180530.1 | hypothetical protein | - |
| LFZ12_RS24910 () | 11495..11605 | - | 111 | WP_024159925.1 | Hok/Gef family protein | - |
| LFZ12_RS24915 () | 11707..12915 | + | 1209 | WP_023180529.1 | IncI1-type conjugal transfer protein TrbA | - |
| LFZ12_RS24920 () | 12933..14015 | + | 1083 | WP_023180528.1 | DsbC family protein | - |
| LFZ12_RS24925 () | 14008..16299 | + | 2292 | WP_077945904.1 | TraM recognition domain-containing protein | - |
| LFZ12_RS24930 () | 16574..16927 | - | 354 | WP_058112070.1 | hypothetical protein | - |
| LFZ12_RS24935 () | 17025..17285 | - | 261 | WP_058112069.1 | hypothetical protein | - |
| LFZ12_RS25785 () | 17278..17799 | - | 522 | WP_058112068.1 | FkbM family methyltransferase | - |
| LFZ12_RS24945 () | 17796..18614 | - | 819 | WP_058112067.1 | hypothetical protein | - |
| LFZ12_RS24950 () | 18611..18958 | - | 348 | WP_162803915.1 | CaiF/GrlA family transcriptional regulator | - |
| LFZ12_RS25685 () | 18940..19167 | - | 228 | WP_162803916.1 | hypothetical protein | - |
| LFZ12_RS24960 () | 19505..19993 | - | 489 | WP_114219984.1 | DUF2919 family protein | - |
| LFZ12_RS24965 () | 19990..21963 | - | 1974 | WP_162803918.1 | cobalt ABC transporter permease | - |
| LFZ12_RS24970 () | 22077..28865 | - | 6789 | WP_114219985.1 | hypothetical protein | - |
| LFZ12_RS24975 () | 28916..30667 | - | 1752 | WP_065314005.1 | ShlB/FhaC/HecB family hemolysin secretion/activation protein | - |
| LFZ12_RS24980 () | 31655..32317 | - | 663 | WP_058112063.1 | PAS domain-containing protein | - |
| LFZ12_RS24985 () | 32504..33457 | + | 954 | WP_058112062.1 | sugar phosphate isomerase/epimerase | - |
| LFZ12_RS24990 () | 33479..33856 | + | 378 | WP_023180579.1 | RidA family protein | - |
| LFZ12_RS24995 () | 33870..35099 | + | 1230 | WP_058112061.1 | MFS transporter | - |
| LFZ12_RS25005 () | 36378..36704 | - | 327 | WP_058112059.1 | nucleoside transporter | - |
| LFZ12_RS25010 () | 37419..38177 | + | 759 | WP_058112058.1 | non-specific acid phosphatase | - |
| LFZ12_RS25015 () | 38298..38530 | - | 233 | Protein_31 | SdiA-regulated domain-containing protein | - |
| LFZ12_RS25020 () | 38608..41307 | - | 2700 | WP_058112057.1 | IncI1-type relaxase NikB | - |
| LFZ12_RS25025 () | 41317..41649 | - | 333 | WP_023180573.1 | relaxosome component | - |
| LFZ12_RS25030 () | 41881..42216 | + | 336 | WP_000729194.1 | hypothetical protein | - |
| LFZ12_RS25035 () | 42303..43151 | - | 849 | WP_058112056.1 | DUF4942 domain-containing protein | - |
| LFZ12_RS25045 () | 43762..44013 | + | 252 | WP_023180571.1 | helix-turn-helix domain-containing protein | - |
| LFZ12_RS25050 () | 44055..44270 | - | 216 | WP_072197400.1 | hypothetical protein | - |
| LFZ12_RS25055 () | 44314..45270 | - | 957 | WP_058112054.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| LFZ12_RS25060 () | 45335..45601 | - | 267 | WP_023180568.1 | hypothetical protein | - |
| LFZ12_RS25065 () | 45693..46127 | - | 435 | WP_000218869.1 | hypothetical protein | - |
| LFZ12_RS25690 () | 46232..46864 | + | 633 | WP_162803917.1 | hypothetical protein | - |
| LFZ12_RS25075 () | 46836..47336 | - | 501 | WP_023180567.1 | antirestriction protein ArdA | - |
| LFZ12_RS25085 () | 47812..48129 | - | 318 | WP_023180230.1 | hypothetical protein | - |
| LFZ12_RS25090 () | 48126..48866 | - | 741 | WP_058112053.1 | plasmid SOS inhibition protein A | - |
| LFZ12_RS25095 () | 48863..49297 | - | 435 | WP_077910314.1 | conjugation system SOS inhibitor PsiB | - |
| LFZ12_RS25100 () | 49338..51383 | - | 2046 | WP_058112052.1 | ParB/RepB/Spo0J family partition protein | - |
| LFZ12_RS25105 () | 51460..51702 | - | 243 | WP_000131765.1 | DUF905 domain-containing protein | - |
| LFZ12_RS25110 () | 51757..52305 | - | 549 | WP_001276133.1 | single-stranded DNA-binding protein | - |
| LFZ12_RS25120 () | 53068..53259 | - | 192 | WP_058112051.1 | hypothetical protein | - |
| LFZ12_RS25125 () | 53273..53683 | - | 411 | WP_058112050.1 | DUF1380 domain-containing protein | - |
| LFZ12_RS25130 () | 53730..54155 | - | 426 | WP_001198816.1 | antirestriction protein | - |
| LFZ12_RS25140 () | 54576..55349 | - | 774 | WP_001245637.1 | hypothetical protein | - |
| LFZ12_RS25145 () | 55424..55834 | - | 411 | WP_000990113.1 | DUF1380 family protein | - |
| LFZ12_RS25150 () | 55893..56114 | - | 222 | WP_001110185.1 | hypothetical protein | - |
| LFZ12_RS25155 () | 56114..56797 | - | 684 | WP_000088646.1 | DNA methylase | - |
| LFZ12_RS25160 () | 56873..57139 | - | 267 | Protein_56 | hypothetical protein | - |
| LFZ12_RS25165 () | 57178..57528 | - | 351 | WP_023180565.1 | hypothetical protein | - |
| LFZ12_RS25170 () | 57521..57754 | - | 234 | WP_023180564.1 | hypothetical protein | - |
| LFZ12_RS25175 () | 57790..58698 | - | 909 | WP_001212331.1 | DUF1281 domain-containing protein | - |
| LFZ12_RS25180 () | 59134..59475 | - | 342 | WP_000131023.1 | hypothetical protein | - |
| LFZ12_RS25185 () | 59562..60206 | - | 645 | WP_001272524.1 | hypothetical protein | - |
| LFZ12_RS25190 () | 60209..61177 | - | 969 | WP_024134920.1 | plasmid segregation protein parM | - |
| LFZ12_RS25195 () | 61480..61908 | + | 429 | WP_000945337.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LFZ12_RS25200 () | 61908..63179 | + | 1272 | WP_058112049.1 | Y-family DNA polymerase | - |
| LFZ12_RS25205 () | 63406..63744 | - | 339 | WP_024136783.1 | hypothetical protein | - |
| LFZ12_RS25210 () | 63836..64477 | - | 642 | WP_000511282.1 | ParA family protein | - |
| LFZ12_RS25215 () | 65015..65878 | + | 864 | WP_000074442.1 | RepB family plasmid replication initiator protein | - |
| LFZ12_RS25220 () | 66112..66494 | - | 383 | Protein_68 | tyrosine-type recombinase/integrase | - |
| LFZ12_RS25225 () | 67167..68717 | + | 1551 | WP_001068091.1 | hypothetical protein | - |
| LFZ12_RS25230 () | 68740..69213 | + | 474 | WP_000120460.1 | toxin-activating lysine-acyltransferase | - |
| LFZ12_RS25235 () | 69318..70592 | + | 1275 | WP_023180562.1 | HlyD family secretion protein | - |
| LFZ12_RS25240 () | 70567..72681 | + | 2115 | WP_001838495.1 | peptidase domain-containing ABC transporter | - |
| LFZ12_RS25790 () | 72795..72947 | + | 153 | WP_001838496.1 | hypothetical protein | - |
| LFZ12_RS25250 () | 73562..74257 | - | 696 | WP_000389613.1 | CPBP family intramembrane metalloprotease | - |
| LFZ12_RS25255 () | 74760..75542 | - | 783 | WP_058112048.1 | site-specific integrase | - |
| LFZ12_RS25260 () | 75555..76089 | - | 535 | Protein_76 | cytoplasmic protein | - |
| LFZ12_RS25265 () | 76086..76376 | - | 291 | WP_058112047.1 | cytoplasmic protein | - |
| LFZ12_RS25270 () | 76378..76683 | - | 306 | WP_001159874.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| LFZ12_RS25275 () | 76685..76903 | - | 219 | WP_000813642.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| LFZ12_RS25280 () | 77649..77879 | + | 231 | WP_001261289.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| LFZ12_RS25285 () | 77876..78292 | + | 417 | WP_058112046.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LFZ12_RS25290 () | 78338..82132 | - | 3795 | WP_023180558.1 | hypothetical protein | - |
| LFZ12_RS25300 () | 82480..82725 | + | 246 | WP_000368360.1 | hypothetical protein | - |
| LFZ12_RS25305 () | 82730..83692 | + | 963 | WP_000169857.1 | hypothetical protein | - |
| LFZ12_RS25310 () | 83727..84071 | + | 345 | WP_000101248.1 | hypothetical protein | - |
| LFZ12_RS25315 () | 84072..84284 | + | 213 | WP_000704436.1 | hypothetical protein | - |
| LFZ12_RS25325 () | 84380..85744 | - | 1365 | WP_001838499.1 | hypothetical protein | - |
| LFZ12_RS25330 () | 86079..86615 | - | 537 | WP_000123884.1 | hypothetical protein | - |
| LFZ12_RS25335 () | 87374..88405 | - | 1032 | WP_023180555.1 | RepA | - |
| LFZ12_RS25345 () | 89574..89840 | + | 267 | WP_000074848.1 | conjugal transfer protein TraA | - |
| LFZ12_RS25795 () | 90165..90288 | + | 124 | Protein_91 | conjugal transfer protein TraA | - |
| LFZ12_RS25350 () | 90294..90818 | + | 525 | WP_024134923.1 | transcription termination factor NusG | - |
| LFZ12_RS25355 () | 91099..91800 | + | 702 | WP_023180554.1 | DUF2913 family protein | - |
| LFZ12_RS25360 () | 91837..92415 | + | 579 | WP_024136773.1 | hypothetical protein | - |
| LFZ12_RS25365 () | 92485..92757 | + | 273 | WP_071777806.1 | PilI type IV pilus biogenesis protein | - |
| LFZ12_RS25370 () | 92816..93883 | + | 1068 | WP_058112045.1 | TcpQ domain-containing protein | - |
| LFZ12_RS25375 () | 93883..94320 | + | 438 | WP_000539812.1 | type IV pilus biogenesis protein PilM | - |
| LFZ12_RS25380 () | 94334..96016 | + | 1683 | WP_000733116.1 | PilN family type IVB pilus formation outer membrane protein | - |
| LFZ12_RS25385 () | 96009..97310 | + | 1302 | WP_000752767.1 | type 4b pilus protein PilO2 | - |
| LFZ12_RS25390 () | 97297..97749 | + | 453 | WP_058112044.1 | type IV pilus biogenesis protein PilP | - |
| LFZ12_RS25395 () | 97760..99313 | + | 1554 | WP_000545265.1 | Flp pilus assembly complex ATPase component TadA | - |
| LFZ12_RS25400 () | 99326..100423 | + | 1098 | WP_001208801.1 | type II secretion system F family protein | - |
| LFZ12_RS25405 () | 100441..101058 | + | 618 | WP_023180549.1 | type IV prepilin cluster, prepilin | - |
| LFZ12_RS25410 () | 101068..101628 | + | 561 | WP_023180548.1 | lytic transglycosylase domain-containing protein | - |
| LFZ12_RS25415 () | 101613..102269 | + | 657 | WP_023180547.1 | prepilin peptidase | - |
| LFZ12_RS25420 () | 102269..103597 | + | 1329 | WP_058112071.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| LFZ12_RS25430 () | 104080..105282 | + | 1203 | WP_058112043.1 | conjugal transfer protein TraF | - |
| LFZ12_RS25435 () | 105800..106255 | + | 456 | WP_001079810.1 | DotD/TraH family lipoprotein | - |
| LFZ12_RS25440 () | 106252..107085 | + | 834 | WP_023180544.1 | type IV secretory system conjugative DNA transfer family protein | - |
| LFZ12_RS25445 () | 107229..108377 | + | 1149 | WP_023180543.1 | plasmid transfer ATPase TraJ | - |
| LFZ12_RS25450 () | 108374..108664 | + | 291 | WP_001838506.1 | hypothetical protein | - |
| LFZ12_RS25455 () | 108679..109236 | + | 558 | WP_000014577.1 | phospholipase D family protein | - |
| LFZ12_RS25460 () | 109517..113134 | + | 3618 | WP_023180542.1 | SogL protein | - |
| LFZ12_RS25465 () | 113152..113502 | + | 351 | WP_001055902.1 | hypothetical protein | - |
| LFZ12_RS25470 () | 113514..114206 | + | 693 | WP_023180541.1 | DotI/IcmL family type IV secretion protein | - |
| LFZ12_RS25475 () | 114217..115200 | + | 984 | WP_023180540.1 | TraN protein | - |
| LFZ12_RS25480 () | 115203..116504 | + | 1302 | WP_001272006.1 | conjugal transfer protein TraO | - |
| LFZ12_RS25485 () | 116501..117214 | + | 714 | WP_023180539.1 | conjugal transfer protein TraP | - |
| LFZ12_RS25490 () | 117214..117741 | + | 528 | WP_001090609.1 | conjugal transfer protein TraQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|