MGE detailed information
MGE type: Conjugative plasmid MGE length: 61476 bp
Accession: NZ_CP030284 Location: 1..61476 Organism: Escherichia coli strain E308 Replicon: plasmid pLKSZ03
Accession: NZ_CP030284 Location: 1..61476 Organism: Escherichia coli strain E308 Replicon: plasmid pLKSZ03
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQW89_RS27980 () | 172..513 | + | 342 | WP_162883676.1 | conjugal transfer protein | - |
| DQW89_RS26580 () | 907..3223 | + | 2317 | Protein_2 | conjugal transfer protein | - |
| DQW89_RS26585 () | 3394..4119 | + | 726 | Protein_3 | type IV secretion system protein | - |
| DQW89_RS26590 () | 4216..4876 | + | 661 | Protein_4 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| DQW89_RS26595 () | 5103..5991 | + | 889 | Protein_5 | TrbI/VirB10 family protein | - |
| DQW89_RS26600 () | 6010..7064 | + | 1055 | Protein_6 | Type IV secretion system protein VirB11 | VF |
| DQW89_RS26605 () | 7393..9037 | + | 1645 | Protein_7 | type IV secretory system conjugative DNA transfer family protein | - |
| DQW89_RS26610 () | 9084..9619 | + | 536 | Protein_8 | sigma 54-interacting transcriptional regulator | - |
| DQW89_RS26615 () | 9612..11254 | + | 1643 | Protein_9 | Outer membrane lipoprotein BfpB | VF |
| DQW89_RS26620 () | 11293..12615 | + | 1323 | WP_000454142.1 | type 4b pilus protein PilO2 | - |
| DQW89_RS26625 () | 12599..13093 | + | 495 | WP_000912553.1 | hypothetical protein | VF |
| DQW89_RS26630 () | 13118..14656 | + | 1539 | WP_000466225.1 | Type II secretion system protein E | VF |
| DQW89_RS26635 () | 14647..15756 | + | 1110 | WP_000974903.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| DQW89_RS26640 () | 15801..16358 | + | 558 | WP_000095048.1 | hypothetical protein | - |
| DQW89_RS26645 () | 16424..16825 | + | 402 | Protein_15 | hypothetical protein | VF |
| DQW89_RS26655 () | 18246..18881 | + | 636 | WP_000934977.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| DQW89_RS26660 () | 18894..20264 | + | 1371 | Protein_18 | hypothetical protein | VF |
| DQW89_RS28145 () | 20261..20413 | - | 153 | WP_072145998.1 | prepilin | - |
| DQW89_RS26675 () | 20761..21069 | - | 309 | WP_001199277.1 | hypothetical protein | - |
| DQW89_RS26680 () | 21118..22242 | + | 1125 | WP_000486716.1 | site-specific integrase | - |
| DQW89_RS26685 () | 22483..22908 | + | 426 | WP_034169411.1 | hypothetical protein | - |
| DQW89_RS26690 () | 22955..23470 | + | 516 | WP_000698398.1 | thermonuclease family protein | - |
| DQW89_RS26695 () | 23852..25240 | + | 1389 | WP_072770489.1 | PcfJ domain-containing protein | - |
| DQW89_RS26700 () | 25410..25985 | + | 576 | WP_001303470.1 | hypothetical protein | - |
| DQW89_RS26705 () | 25990..28155 | + | 2166 | WP_063078686.1 | type IA DNA topoisomerase | - |
| DQW89_RS26710 () | 28224..28457 | + | 234 | WP_162883677.1 | hemolysin expression modulator Hha | - |
| DQW89_RS27985 () | 28775..29215 | + | 441 | WP_000666084.1 | hypothetical protein | - |
| DQW89_RS26720 () | 29174..29947 | - | 774 | WP_052234578.1 | PAP2 family protein | - |
| DQW89_RS26725 () | 30019..31644 | - | 1626 | WP_049589868.1 | putative phosphatidylethanolamine transferase Mcr-1 | VF |
| DQW89_RS26730 () | 31865..36177 | - | 4313 | Protein_31 | relaxase | - |
| DQW89_RS26735 () | 36174..36515 | - | 342 | WP_000730722.1 | hypothetical protein | Relaxase |
| DQW89_RS26740 () | 36883..37283 | + | 401 | Protein_33 | zinc transporter | - |
| DQW89_RS26745 () | 37301..38053 | + | 753 | WP_063078685.1 | conjugal transfer protein TraL | - |
| DQW89_RS26750 () | 38055..38762 | + | 708 | WP_021503228.1 | hypothetical protein | - |
| DQW89_RS26755 () | 38782..39108 | + | 327 | WP_063078684.1 | hypothetical protein | - |
| DQW89_RS26760 () | 39239..39676 | - | 438 | WP_000466318.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| DQW89_RS26765 () | 39701..39883 | - | 183 | WP_000833470.1 | type II toxin-antitoxin system HicA family toxin | - |
| DQW89_RS26770 () | 40441..40623 | + | 183 | WP_001481829.1 | hypothetical protein | - |
| DQW89_RS26775 () | 40730..40996 | - | 267 | WP_000681608.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| DQW89_RS26780 () | 41416..41694 | - | 279 | WP_000545938.1 | hypothetical protein | - |
| DQW89_RS26795 () | 42244..42495 | - | 252 | WP_001132407.1 | transcriptional regulator | Antitoxin Detail |
| DQW89_RS26800 () | 42485..42745 | - | 261 | WP_000702247.1 | hypothetical protein | Toxin Detail |
| DQW89_RS26805 () | 42797..43021 | - | 225 | WP_000814381.1 | hypothetical protein | - |
| DQW89_RS26810 () | 43118..43327 | - | 210 | WP_000866036.1 | hypothetical protein | - |
| DQW89_RS26815 () | 43368..43691 | - | 324 | WP_000427403.1 | hypothetical protein | - |
| DQW89_RS27990 () | 44018..44164 | + | 147 | WP_001356709.1 | hypothetical protein | - |
| DQW89_RS26825 () | 44273..44602 | - | 330 | WP_000855120.1 | hypothetical protein | - |
| DQW89_RS26835 () | 45200..45865 | + | 666 | WP_000532148.1 | P-loop NTPase | - |
| DQW89_RS28150 () | 45939..46223 | + | 285 | WP_001162371.1 | hypothetical protein | - |
| DQW89_RS26845 () | 46241..46837 | - | 597 | WP_000125165.1 | hypothetical protein | - |
| DQW89_RS26850 () | 46987..47148 | - | 162 | WP_000775236.1 | type I toxin-antitoxin system Hok family toxin | - |
| DQW89_RS26870 () | 48747..49775 | - | 1029 | WP_001175213.1 | replication initiation protein | - |
| DQW89_RS26875 () | 50861..51367 | + | 507 | WP_001326595.1 | CaiF/GrlA family transcriptional regulator | - |
| DQW89_RS26880 () | 51360..51575 | + | 216 | WP_001127357.1 | DUF1187 family protein | - |
| DQW89_RS27995 () | 51568..51744 | + | 177 | WP_000753050.1 | hypothetical protein | - |
| DQW89_RS26885 () | 51771..52724 | + | 954 | WP_072089442.1 | SPFH/Band 7/PHB domain protein | - |
| DQW89_RS26895 () | 53098..53541 | + | 444 | WP_000964330.1 | NfeD family protein | - |
| DQW89_RS28000 () | 53545..53715 | + | 171 | WP_000550720.1 | hypothetical protein | - |
| DQW89_RS26900 () | 53726..54172 | + | 447 | WP_001243165.1 | hypothetical protein | - |
| DQW89_RS26905 () | 54205..54462 | + | 258 | WP_001542015.1 | hypothetical protein | - |
| DQW89_RS26910 () | 54443..54745 | + | 303 | WP_001360345.1 | hypothetical protein | - |
| DQW89_RS26915 () | 54742..54999 | + | 258 | WP_000739144.1 | hypothetical protein | - |
| DQW89_RS26920 () | 55003..55998 | + | 996 | WP_001028543.1 | type IV secretion system protein | - |
| DQW89_RS26925 () | 56004..56645 | + | 642 | WP_001425343.1 | hypothetical protein | VF |
| DQW89_RS26930 () | 56647..56901 | + | 255 | WP_001043555.1 | EexN family lipoprotein | - |
| DQW89_RS26935 () | 56914..57201 | + | 288 | WP_001032611.1 | EexN family lipoprotein | - |
| DQW89_RS26940 () | 57274..57909 | + | 636 | WP_015059536.1 | hypothetical protein | - |
| DQW89_RS26945 () | 58009..58260 | + | 252 | WP_000121741.1 | hypothetical protein | Antitoxin Detail |
| DQW89_RS26950 () | 58250..58531 | + | 282 | WP_000638823.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DQW89_RS26955 () | 58599..58898 | + | 300 | WP_000835764.1 | IncN plasmid KikA protein | - |
| DQW89_RS26960 () | 58901..60137 | + | 1237 | Protein_72 | TcpQ domain-containing protein | - |
| DQW89_RS26965 () | 60143..60580 | + | 438 | WP_000539665.1 | type IV pilus biogenesis protein PilM | - |
| DQW89_RS26970 () | 60699..61097 | + | 399 | WP_001153665.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|