MGE detailed information
MGE type: Conjugative plasmid MGE length: 111721 bp
Accession: NZ_CP030282 Location: 1..111721 Organism: Escherichia coli strain E308 Replicon: plasmid pLKSZ01
Accession: NZ_CP030282 Location: 1..111721 Organism: Escherichia coli strain E308 Replicon: plasmid pLKSZ01
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQW89_RS25020 () | 161..594 | + | 434 | Protein_1 | type IV pilus biogenesis protein PilM | - |
| DQW89_RS25025 () | 608..2088 | + | 1481 | Protein_2 | PilN family type IVB pilus formation outer membrane protein | - |
| DQW89_RS27895 () | 2061..2222 | + | 162 | WP_162883671.1 | hypothetical protein | - |
| DQW89_RS25030 () | 2274..3570 | + | 1297 | Protein_4 | type 4b pilus protein PilO2 | - |
| DQW89_RS25045 () | 4024..5573 | + | 1550 | Protein_5 | Flp pilus assembly complex ATPase component TadA | - |
| DQW89_RS25050 () | 5586..6669 | + | 1084 | Protein_6 | type II secretion system F family protein | - |
| DQW89_RS25055 () | 6686..7300 | + | 615 | WP_000908226.1 | type IV prepilin | - |
| DQW89_RS25060 () | 7310..7869 | + | 560 | Protein_8 | lytic transglycosylase domain-containing protein | - |
| DQW89_RS25065 () | 7854..8510 | + | 657 | WP_001193549.1 | prepilin peptidase | - |
| DQW89_RS25070 () | 8539..9933 | + | 1395 | WP_180275886.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| DQW89_RS28105 () | 9930..10189 | - | 260 | Protein_11 | prepilin | - |
| DQW89_RS25105 () | 11283..11438 | - | 156 | WP_001302705.1 | hypothetical protein | - |
| DQW89_RS25110 () | 11566..11967 | + | 402 | Protein_13 | integrase | - |
| DQW89_RS25120 () | 13279..14034 | + | 756 | Protein_15 | tyrosine-type recombinase/integrase | - |
| DQW89_RS25125 () | 14185..15009 | + | 825 | WP_001690630.1 | conjugal transfer protein TraE | - |
| DQW89_RS25130 () | 15095..16297 | + | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| DQW89_RS25135 () | 16355..16939 | + | 585 | WP_045133143.1 | lipopolysaccharide core heptose(II)-phosphate phosphatase | - |
| DQW89_RS25140 () | 17334..17792 | + | 459 | WP_001079808.1 | IncI1-type conjugal transfer lipoprotein TraH | - |
| DQW89_RS25145 () | 17789..18607 | + | 819 | WP_032220737.1 | IncI1-type conjugal transfer lipoprotein TraI | - |
| DQW89_RS25150 () | 18604..19752 | + | 1149 | WP_001024972.1 | plasmid transfer ATPase TraJ | - |
| DQW89_RS25155 () | 19749..20039 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| DQW89_RS25160 () | 20054..20605 | + | 552 | WP_000014586.1 | phospholipase D family protein | - |
| DQW89_RS25165 () | 20889..24459 | + | 3571 | Protein_24 | DNA primase | - |
| DQW89_RS25170 () | 24477..24824 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| DQW89_RS25175 () | 24821..25513 | + | 693 | WP_000138551.1 | DotI/IcmL family type IV secretion protein | - |
| DQW89_RS25180 () | 25524..26507 | + | 984 | WP_001191880.1 | IncI1-type conjugal transfer protein TraN | - |
| DQW89_RS25185 () | 26510..27799 | + | 1290 | WP_001271991.1 | conjugal transfer protein TraO | - |
| DQW89_RS25190 () | 27799..28503 | + | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| DQW89_RS25195 () | 28503..29030 | + | 528 | WP_045133141.1 | conjugal transfer protein TraQ | - |
| DQW89_RS25200 () | 29081..29485 | + | 405 | WP_021497835.1 | IncI1-type conjugal transfer protein TraR | - |
| DQW89_RS25205 () | 29549..29737 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| DQW89_RS25210 () | 29721..30521 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| DQW89_RS25215 () | 30611..33655 | + | 3045 | WP_118394089.1 | IncI1-type conjugal transfer protein TraU | - |
| DQW89_RS25220 () | 33655..34269 | + | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| DQW89_RS25225 () | 34236..35438 | + | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| DQW89_RS25230 () | 35467..36051 | + | 585 | WP_001476649.1 | IncI1-type conjugal transfer protein TraX | - |
| DQW89_RS25235 () | 36148..38316 | + | 2169 | WP_000698357.1 | DotA/TraY family protein | - |
| DQW89_RS25240 () | 38390..39040 | + | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| DQW89_RS25245 () | 39112..39321 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| DQW89_RS27900 () | 39713..39889 | + | 177 | WP_001054898.1 | hypothetical protein | - |
| DQW89_RS25250 () | 40548..40799 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| DQW89_RS25255 () | 40871..41023 | - | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| - () | 41073..41135 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 41073..41135 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 41073..41135 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 41073..41135 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| DQW89_RS25260 () | 41315..42523 | + | 1209 | WP_039005623.1 | IncI1-type conjugal transfer protein TrbA | - |
| DQW89_RS25265 () | 42542..43612 | + | 1071 | WP_039005625.1 | IncI1-type conjugal transfer protein TrbB | - |
| DQW89_RS25270 () | 43605..45896 | + | 2292 | WP_072742854.1 | conjugal transfer protein TrbC | - |
| DQW89_RS25285 () | 46681..47316 | + | 636 | WP_000999378.1 | CPBP family intramembrane metalloprotease | - |
| DQW89_RS25290 () | 47419..48672 | + | 1254 | WP_001685252.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| DQW89_RS25295 () | 48672..50860 | + | 2189 | Protein_49 | peptidase domain-containing ABC transporter | - |
| DQW89_RS25300 () | 50910..51482 | - | 573 | WP_000332079.1 | hypothetical protein | - |
| DQW89_RS25305 () | 51508..54207 | - | 2700 | WP_039005629.1 | IncI1-type relaxase NikB | - |
| DQW89_RS25310 () | 54218..54550 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| DQW89_RS25315 () | 54784..55119 | + | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| DQW89_RS25320 () | 55205..56053 | - | 849 | WP_001077032.1 | DUF4942 domain-containing protein | - |
| DQW89_RS25330 () | 56402..56599 | + | 198 | Protein_55 | hypothetical protein | - |
| DQW89_RS25335 () | 56633..56884 | + | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| DQW89_RS25340 () | 56915..57121 | - | 207 | WP_001532090.1 | hypothetical protein | - |
| DQW89_RS25345 () | 57183..58061 | - | 879 | WP_000038331.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| DQW89_RS25350 () | 58126..58392 | - | 267 | WP_001247862.1 | hypothetical protein | - |
| DQW89_RS25355 () | 58486..58920 | - | 435 | WP_000218863.1 | hypothetical protein | - |
| DQW89_RS25370 () | 59649..60149 | - | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| DQW89_RS25380 () | 60612..61208 | - | 597 | WP_000978012.1 | hypothetical protein | - |
| DQW89_RS25385 () | 61205..61924 | - | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| DQW89_RS25390 () | 61921..62354 | - | 434 | Protein_64 | conjugation system SOS inhibitor PsiB | - |
| DQW89_RS25395 () | 62409..64366 | - | 1958 | Protein_65 | ParB/RepB/Spo0J family partition protein | - |
| DQW89_RS25400 () | 64428..64661 | - | 234 | WP_001042948.1 | DUF905 domain-containing protein | - |
| DQW89_RS25405 () | 64718..65245 | - | 528 | WP_001276121.1 | single-stranded DNA-binding protein | - |
| DQW89_RS28110 () | 65614..65682 | + | 69 | Protein_68 | pilus protein | - |
| DQW89_RS25420 () | 66015..66206 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| DQW89_RS25425 () | 66203..66625 | - | 423 | WP_045133341.1 | DUF1380 family protein | - |
| DQW89_RS25430 () | 66672..66974 | - | 303 | WP_072742858.1 | antirestriction protein | - |
| DQW89_RS25440 () | 67515..68285 | - | 771 | WP_045133340.1 | hypothetical protein | - |
| DQW89_RS25445 () | 68330..68764 | - | 435 | WP_000274499.1 | DUF1380 family protein | - |
| DQW89_RS25450 () | 68778..68999 | - | 222 | WP_001104879.1 | hypothetical protein | - |
| DQW89_RS25455 () | 69000..69683 | - | 684 | WP_045133339.1 | DNA methylase | - |
| DQW89_RS25460 () | 69759..70070 | - | 312 | WP_032143956.1 | hypothetical protein | - |
| DQW89_RS25465 () | 70067..70969 | - | 903 | WP_077872020.1 | DUF1281 domain-containing protein | - |
| DQW89_RS25475 () | 71387..71635 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| DQW89_RS25480 () | 71632..72069 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| DQW89_RS25485 () | 72069..73343 | + | 1275 | WP_000457524.1 | Y-family DNA polymerase | - |
| DQW89_RS25490 () | 73345..73761 | - | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| DQW89_RS25495 () | 73754..74734 | - | 981 | WP_045133365.1 | plasmid segregation protein ParM | - |
| DQW89_RS25500 () | 75148..75456 | - | 309 | WP_000048808.1 | hypothetical protein | - |
| DQW89_RS25505 () | 75543..76187 | - | 645 | WP_001144036.1 | ParA family protein | - |
| DQW89_RS25510 () | 76367..77155 | - | 789 | WP_000016498.1 | site-specific integrase | - |
| DQW89_RS25515 () | 77152..77841 | - | 690 | WP_000796228.1 | hypothetical protein | - |
| DQW89_RS25520 () | 77885..78235 | - | 351 | WP_000493379.1 | hypothetical protein | - |
| DQW89_RS25525 () | 78767..82588 | - | 3822 | WP_045133346.1 | hypothetical protein | - |
| DQW89_RS27905 () | 82832..82993 | + | 162 | WP_000251882.1 | hypothetical protein | - |
| DQW89_RS25530 () | 83011..83358 | - | 348 | WP_066019393.1 | hypothetical protein | - |
| DQW89_RS25540 () | 84048..84194 | + | 147 | Protein_91 | lipid II-degrading bacteriocin | - |
| DQW89_RS25545 () | 84244..84597 | - | 354 | WP_000864815.1 | colicin M immunity protein | - |
| DQW89_RS25550 () | 84770..85426 | - | 657 | WP_166494957.1 | site-specific integrase | - |
| DQW89_RS25555 () | 86380..86589 | + | 210 | WP_000929752.1 | major pilus subunit operon regulatory protein PapB | - |
| DQW89_RS25560 () | 86778..87533 | + | 756 | WP_024198451.1 | fimbria/pilus periplasmic chaperone | - |
| DQW89_RS25565 () | 87688..90218 | + | 2531 | Protein_96 | fimbria/pilus outer membrane usher protein | - |
| DQW89_RS25570 () | 90235..90657 | + | 423 | WP_045133246.1 | adhesin | - |
| DQW89_RS25575 () | 91150..91632 | + | 483 | WP_066019395.1 | hypothetical protein | - |
| DQW89_RS25585 () | 91850..92305 | + | 456 | WP_045133248.1 | IS200/IS605 family transposase | - |
| DQW89_RS25590 () | 92415..92867 | - | 453 | WP_000670961.1 | N-acetyltransferase | - |
| DQW89_RS25595 () | 93196..93453 | + | 258 | WP_000371887.1 | hypothetical protein | - |
| DQW89_RS25600 () | 93453..94043 | + | 591 | WP_045133249.1 | hypothetical protein | - |
| DQW89_RS25605 () | 94061..94408 | - | 348 | WP_000142443.1 | hypothetical protein | - |
| DQW89_RS25615 () | 94537..94872 | + | 336 | WP_045133168.1 | colicin transporter | - |
| DQW89_RS25620 () | 94889..96769 | - | 1881 | WP_032221836.1 | colicin | - |
| DQW89_RS25625 () | 97048..97287 | - | 240 | Protein_106 | hypothetical protein | - |
| DQW89_RS25640 () | 98615..99730 | - | 1116 | WP_113454229.1 | hypothetical protein | - |
| DQW89_RS25650 () | 100084..100686 | + | 603 | WP_045133169.1 | proQ/FINO family protein | - |
| DQW89_RS25655 () | 100742..101236 | + | 495 | WP_001350009.1 | hypothetical protein | - |
| DQW89_RS28115 () | 101236..101502 | + | 267 | WP_000627831.1 | hypothetical protein | - |
| DQW89_RS25670 () | 101979..102452 | - | 474 | WP_077128838.1 | hypothetical protein | - |
| DQW89_RS25675 () | 102569..103417 | - | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| DQW89_RS25680 () | 103457..103738 | - | 282 | WP_000969996.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DQW89_RS25685 () | 103735..104004 | - | 270 | WP_032181987.1 | hypothetical protein | Antitoxin Detail |
| DQW89_RS27910 () | 104059..104217 | - | 159 | WP_000841008.1 | hypothetical protein | - |
| DQW89_RS25700 () | 104913..105944 | - | 1032 | WP_044706701.1 | replication initiation protein | - |
| DQW89_RS25715 () | 106917..107180 | + | 264 | WP_001324596.1 | ash family protein | - |
| DQW89_RS25720 () | 107098..107385 | + | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| DQW89_RS25730 () | 107827..108360 | + | 534 | WP_001306770.1 | transcription termination factor NusG | - |
| DQW89_RS25735 () | 108613..109296 | + | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| DQW89_RS25740 () | 109423..109842 | + | 420 | WP_072115345.1 | PilI type IV pilus biogenesis protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|