MGE detailed information
MGE type: Conjugative plasmid MGE length: 109689 bp
Accession: NZ_CP030155 Location: 1..109689 Organism: Escherichia coli strain JSMCR1 Replicon: plasmid pJSMCR1_3
Accession: NZ_CP030155 Location: 1..109689 Organism: Escherichia coli strain JSMCR1 Replicon: plasmid pJSMCR1_3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JSMCR1_RS24800 (2659) | 2659..3006 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| JSMCR1_RS24805 (3003) | 3003..3695 | + | 693 | WP_000138551.1 | DotI/IcmL family type IV secretion protein | - |
| JSMCR1_RS24810 (3706) | 3706..4689 | + | 984 | WP_001191880.1 | hypothetical protein | VF |
| JSMCR1_RS24815 (4692) | 4692..5981 | + | 1290 | WP_001271991.1 | conjugal transfer protein TraO | - |
| JSMCR1_RS24820 (5981) | 5981..6685 | + | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| JSMCR1_RS24825 (6685) | 6685..7212 | + | 528 | WP_045133141.1 | conjugal transfer protein TraQ | - |
| JSMCR1_RS24830 (7263) | 7263..7667 | + | 405 | WP_021497835.1 | IncI1-type conjugal transfer protein TraR | - |
| JSMCR1_RS24835 (7731) | 7731..7919 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| JSMCR1_RS24840 (7903) | 7903..8703 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| JSMCR1_RS24845 (8793) | 8793..11837 | + | 3045 | WP_001024782.1 | IncI1-type conjugal transfer protein TraU | - |
| JSMCR1_RS24850 (11837) | 11837..12451 | + | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| JSMCR1_RS24855 (12418) | 12418..13620 | + | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| JSMCR1_RS24860 (13649) | 13649..14233 | + | 585 | WP_001476649.1 | IncI1-type conjugal transfer protein TraX | - |
| JSMCR1_RS24865 (14330) | 14330..16498 | + | 2169 | WP_000698357.1 | DotA/TraY family protein | - |
| JSMCR1_RS24870 (16572) | 16572..17222 | + | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| JSMCR1_RS24875 (17294) | 17294..17503 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| JSMCR1_RS24880 (17895) | 17895..18071 | + | 177 | WP_001054898.1 | hypothetical protein | - |
| JSMCR1_RS24885 (18136) | 18136..18368 | - | 233 | Protein_18 | hypothetical protein | - |
| JSMCR1_RS24890 (18730) | 18730..18981 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| JSMCR1_RS24895 (19053) | 19053..19205 | - | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| - (19255) | 19255..19317 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (19255) | 19255..19317 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (19255) | 19255..19317 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (19255) | 19255..19317 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| JSMCR1_RS24900 (19497) | 19497..20705 | + | 1209 | WP_039005623.1 | IncI1-type conjugal transfer protein TrbA | - |
| JSMCR1_RS24905 (20724) | 20724..21794 | + | 1071 | WP_039005625.1 | IncI1-type conjugal transfer protein TrbB | - |
| JSMCR1_RS24910 (21787) | 21787..24078 | + | 2292 | WP_072742854.1 | F-type conjugative transfer protein TrbC | - |
| JSMCR1_RS24915 (25136) | 25136..25498 | + | 363 | WP_085004988.1 | CPBP family intramembrane metalloprotease | - |
| JSMCR1_RS24920 (25601) | 25601..26854 | + | 1254 | WP_001685252.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| JSMCR1_RS24925 (26854) | 26854..29043 | + | 2190 | WP_000443942.1 | peptidase domain-containing ABC transporter | - |
| JSMCR1_RS24930 (29093) | 29093..29665 | - | 573 | WP_000332079.1 | hypothetical protein | - |
| JSMCR1_RS24935 (29691) | 29691..32390 | - | 2700 | WP_039005629.1 | Protein TraI | Relaxase |
| JSMCR1_RS24940 (32401) | 32401..32733 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| JSMCR1_RS24945 (32967) | 32967..33302 | + | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| JSMCR1_RS24950 (33388) | 33388..34236 | - | 849 | WP_001077032.1 | DUF4942 domain-containing protein | - |
| JSMCR1_RS24955 (34480) | 34480..34707 | + | 228 | WP_001455299.1 | hypothetical protein | - |
| JSMCR1_RS24960 (34816) | 34816..35067 | + | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| JSMCR1_RS24965 (35098) | 35098..35304 | - | 207 | WP_001532090.1 | hypothetical protein | VF |
| JSMCR1_RS24970 (35366) | 35366..36244 | - | 879 | WP_000038331.1 | Recombination-promoting nuclease RpnA | VF |
| JSMCR1_RS24975 (36309) | 36309..36575 | - | 267 | WP_001247862.1 | hypothetical protein | - |
| JSMCR1_RS24980 (36669) | 36669..37103 | - | 435 | WP_000218863.1 | hypothetical protein | - |
| JSMCR1_RS24985 (37832) | 37832..38332 | - | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| JSMCR1_RS24990 (38795) | 38795..39391 | - | 597 | WP_000978012.1 | hypothetical protein | - |
| JSMCR1_RS24995 (39388) | 39388..40107 | - | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| JSMCR1_RS25000 (40104) | 40104..40538 | - | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| JSMCR1_RS25005 (40593) | 40593..42551 | - | 1959 | WP_045133370.1 | ParB/RepB/Spo0J family partition protein | - |
| JSMCR1_RS25010 (42613) | 42613..42846 | - | 234 | WP_001042948.1 | DUF905 domain-containing protein | - |
| JSMCR1_RS25015 (42903) | 42903..43430 | - | 528 | WP_001276121.1 | single-stranded DNA-binding protein | - |
| JSMCR1_RS25020 (43782) | 43782..44129 | - | 348 | WP_063101793.1 | hypothetical protein | - |
| JSMCR1_RS25025 (44200) | 44200..44391 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| JSMCR1_RS25030 (44388) | 44388..44810 | - | 423 | WP_045133341.1 | DUF1380 family protein | - |
| JSMCR1_RS25035 (44857) | 44857..45282 | - | 426 | WP_001198908.1 | antirestriction protein | - |
| JSMCR1_RS25040 (45700) | 45700..46470 | - | 771 | WP_045133340.1 | hypothetical protein | - |
| JSMCR1_RS25045 (46515) | 46515..46982 | - | 468 | WP_223230041.1 | DUF1380 family protein | - |
| JSMCR1_RS25050 (46963) | 46963..47184 | - | 222 | WP_001104879.1 | hypothetical protein | - |
| JSMCR1_RS25055 (47185) | 47185..47868 | - | 684 | WP_045133339.1 | DNA methylase | - |
| JSMCR1_RS25060 (47944) | 47944..48255 | - | 312 | WP_032143956.1 | hypothetical protein | - |
| JSMCR1_RS25065 (48252) | 48252..49154 | - | 903 | WP_077872020.1 | DUF1281 domain-containing protein | - |
| JSMCR1_RS25070 (49572) | 49572..49820 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| JSMCR1_RS25075 (49817) | 49817..50254 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| JSMCR1_RS25080 (50254) | 50254..51528 | + | 1275 | WP_000457524.1 | Y-family DNA polymerase | - |
| JSMCR1_RS25085 (51530) | 51530..51946 | - | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| JSMCR1_RS25090 (51939) | 51939..52919 | - | 981 | WP_045133365.1 | plasmid segregation protein ParM | - |
| JSMCR1_RS25095 (53333) | 53333..53641 | - | 309 | WP_000048808.1 | hypothetical protein | - |
| JSMCR1_RS25100 (53728) | 53728..54372 | - | 645 | WP_001144036.1 | ParA family protein | - |
| JSMCR1_RS25105 (54552) | 54552..55340 | - | 789 | WP_000016498.1 | site-specific integrase | - |
| JSMCR1_RS25110 (55337) | 55337..56026 | - | 690 | WP_000796232.1 | hypothetical protein | - |
| JSMCR1_RS25115 (56019) | 56019..56288 | - | 270 | WP_001168933.1 | hypothetical protein | - |
| JSMCR1_RS25120 (56922) | 56922..60737 | - | 3816 | WP_240089368.1 | hypothetical protein | - |
| JSMCR1_RS25125 (60963) | 60963..61148 | + | 186 | Protein_66 | hypothetical protein | - |
| JSMCR1_RS25130 (61166) | 61166..61513 | - | 348 | WP_066019393.1 | DUF6404 family protein | - |
| JSMCR1_RS25135 (62203) | 62203..62349 | + | 147 | Protein_68 | lipid II-degrading bacteriocin | - |
| JSMCR1_RS25140 (62399) | 62399..62752 | - | 354 | WP_000864815.1 | colicin M immunity protein | - |
| JSMCR1_RS25145 (62925) | 62925..63712 | - | 788 | Protein_70 | site-specific integrase | - |
| JSMCR1_RS25150 (64534) | 64534..64743 | + | 210 | WP_000929752.1 | Major pilu subunit operon regulatory protein PapB | VF |
| JSMCR1_RS25155 (64932) | 64932..65687 | + | 756 | WP_024198451.1 | Chaperone protein caf1M | VF |
| JSMCR1_RS25160 (65842) | 65842..68373 | + | 2532 | WP_045133252.1 | F1 capsule-anchoring protein | VF |
| JSMCR1_RS25165 (68390) | 68390..68812 | + | 423 | WP_045133246.1 | Protein AggB | VF |
| JSMCR1_RS25170 (69305) | 69305..69787 | + | 483 | WP_256625384.1 | hypothetical protein | - |
| JSMCR1_RS25175 (70005) | 70005..70460 | + | 456 | WP_045133248.1 | IS200-IS605 family transposase IS200C | Transposase |
| JSMCR1_RS25180 (70570) | 70570..71022 | - | 453 | WP_000670961.1 | dTDP-3-amino-3,6-dideoxy-alpha-D-galactopyranose 3-N-acetyltransferase | VF |
| JSMCR1_RS25185 (71351) | 71351..71608 | + | 258 | WP_000371887.1 | hypothetical protein | - |
| JSMCR1_RS25190 (71608) | 71608..72198 | + | 591 | WP_045133249.1 | hypothetical protein | - |
| JSMCR1_RS25195 (72216) | 72216..72563 | - | 348 | WP_000142443.1 | DUF6404 family protein | - |
| JSMCR1_RS25200 (72692) | 72692..73027 | + | 336 | WP_045133168.1 | colicin E1 family microcin immunity protein | - |
| JSMCR1_RS25205 (73044) | 73044..74924 | - | 1881 | WP_032221836.1 | colicin Ia central receptor-binding domain-containing protein | - |
| JSMCR1_RS25210 (75203) | 75203..76549 | - | 1347 | WP_001132021.1 | protein YagA | - |
| JSMCR1_RS25215 (76903) | 76903..77505 | + | 603 | WP_045133169.1 | ProQ/FINO family protein | - |
| JSMCR1_RS25220 (77561) | 77561..77956 | + | 396 | WP_256625388.1 | hypothetical protein | - |
| JSMCR1_RS25225 (78045) | 78045..78233 | + | 189 | WP_000957857.1 | hypothetical protein | - |
| JSMCR1_RS25230 (78243) | 78243..79442 | + | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| JSMCR1_RS25235 (79743) | 79743..80009 | + | 267 | WP_000627831.1 | hypothetical protein | - |
| JSMCR1_RS25240 (80486) | 80486..80959 | - | 474 | WP_077128838.1 | hypothetical protein | - |
| JSMCR1_RS25245 (81076) | 81076..81924 | - | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| JSMCR1_RS25250 (81964) | 81964..82242 | - | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| JSMCR1_RS25255 (82242) | 82242..82511 | - | 270 | WP_032181987.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| JSMCR1_RS25260 (83420) | 83420..84451 | - | 1032 | WP_044706701.1 | plasmid replication initiator RepA | - |
| JSMCR1_RS25265 (85457) | 85457..85687 | + | 231 | WP_228772074.1 | ash family protein | - |
| JSMCR1_RS25270 (85605) | 85605..85892 | + | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| JSMCR1_RS25275 (86334) | 86334..86867 | + | 534 | WP_001306770.1 | transcription termination/antitermination NusG family protein | - |
| JSMCR1_RS25280 (87120) | 87120..87803 | + | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| JSMCR1_RS25285 (87975) | 87975..88349 | + | 375 | WP_001690634.1 | PilI type IV pilus biogenesis protein | - |
| JSMCR1_RS25290 (89321) | 89321..90388 | + | 1068 | WP_001360287.1 | hypothetical protein | VF |
| JSMCR1_RS25295 (90388) | 90388..90825 | + | 438 | WP_000539807.1 | hypothetical protein | VF |
| JSMCR1_RS25300 (90839) | 90839..92521 | + | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| JSMCR1_RS25305 (92514) | 92514..93809 | + | 1296 | WP_000752780.1 | type 4b pilus protein PilO2 | - |
| JSMCR1_RS25310 (93796) | 93796..94248 | + | 453 | WP_001247337.1 | hypothetical protein | VF |
| JSMCR1_RS25315 (94259) | 94259..95812 | + | 1554 | WP_000362206.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| JSMCR1_RS25320 (95825) | 95825..96910 | + | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| JSMCR1_RS25325 (96927) | 96927..97541 | + | 615 | WP_000908226.1 | hypothetical protein | VF |
| JSMCR1_RS25330 (97551) | 97551..98111 | + | 561 | WP_000014005.1 | hypothetical protein | VF |
| JSMCR1_RS25335 (98096) | 98096..98752 | + | 657 | WP_001193549.1 | hypothetical protein | VF |
| JSMCR1_RS25340 (98740) | 98740..100002 | + | 1263 | WP_256625386.1 | hypothetical protein | VF |
| JSMCR1_RS25345 (100787) | 100787..101941 | + | 1155 | WP_001139955.1 | site-specific integrase | - |
| JSMCR1_RS25350 (102092) | 102092..102916 | + | 825 | WP_001690630.1 | conjugal transfer protein TraE | - |
| JSMCR1_RS25355 (103002) | 103002..104229 | + | 1228 | Protein_112 | conjugal transfer protein TraF | - |
| JSMCR1_RS25360 (104264) | 104264..104846 | + | 583 | Protein_113 | lipopolysaccharide core heptose(II)-phosphate phosphatase | - |
| JSMCR1_RS25365 (105240) | 105240..105697 | + | 458 | Protein_114 | hypothetical protein | VF |
| JSMCR1_RS25370 (105694) | 105694..106511 | + | 818 | Protein_115 | hypothetical protein | VF |
| JSMCR1_RS25375 (106492) | 106492..107654 | + | 1163 | Protein_116 | putative protein YggR | VF |
| JSMCR1_RS25380 (107596) | 107596..107938 | + | 343 | Protein_117 | conjugal transfer protein | - |
| JSMCR1_RS25385 (108003) | 108003..108422 | + | 420 | WP_256625387.1 | Phospholipase D | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|