MGE detailed information
MGE type: Prophage MGE length: 95892 bp
Accession: NZ_CP029652 Location: 774287..870178 Organism: Staphylococcus aureus strain AR_0471 Replicon: chromosome
Accession: NZ_CP029652 Location: 774287..870178 Organism: Staphylococcus aureus strain AR_0471 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC56_RS04040 () | 769512..770360 | - | 849 | WP_000608123.1 | DUF72 domain-containing protein | - |
| CSC56_RS04045 () | 770659..771726 | - | 1068 | WP_000267233.1 | nitronate monooxygenase family protein | - |
| CSC56_RS04050 () | 771740..772780 | - | 1041 | WP_000582326.1 | HlyC/CorC family transporter | - |
| CSC56_RS04055 () | 773145..773459 | + | 315 | WP_000274031.1 | hypothetical protein | - |
| CSC56_RS04060 () | 773465..773604 | - | 140 | Protein_729 | hypothetical protein | - |
| CSC56_RS04070 () | 774287..774472 | - | 186 | WP_001286805.1 | hypothetical protein | - |
| CSC56_RS04075 () | 774474..774584 | - | 111 | WP_000139425.1 | hypothetical protein | - |
| CSC56_RS04080 () | 774655..774807 | - | 153 | WP_001788502.1 | hypothetical protein | - |
| CSC56_RS04085 () | 775050..776495 | - | 1446 | WP_103152045.1 | SH3 domain-containing protein | - |
| CSC56_RS04090 () | 776476..776913 | - | 438 | WP_000354132.1 | phage holin | - |
| CSC56_RS04095 () | 776970..777365 | - | 396 | WP_000398878.1 | hypothetical protein | - |
| CSC56_RS04100 () | 777370..778608 | - | 1239 | WP_070854325.1 | BppU family phage baseplate upper protein | - |
| CSC56_RS04105 () | 778621..780495 | - | 1875 | WP_070992115.1 | hypothetical protein | VF |
| CSC56_RS04110 () | 780632..780931 | - | 300 | WP_000466777.1 | DUF2951 domain-containing protein | - |
| CSC56_RS04115 () | 780971..781144 | - | 174 | WP_000782200.1 | XkdX family protein | - |
| CSC56_RS04120 () | 781148..781525 | - | 378 | WP_000705910.1 | DUF2977 domain-containing protein | - |
| CSC56_RS04125 () | 781525..783348 | - | 1824 | WP_070992114.1 | BppU family phage baseplate upper protein | - |
| CSC56_RS04130 () | 783348..785246 | - | 1899 | WP_070992113.1 | hypothetical protein | - |
| CSC56_RS04135 () | 785259..787145 | - | 1887 | WP_001144700.1 | phage tail protein | - |
| CSC56_RS04140 () | 787156..788091 | - | 936 | WP_015978299.1 | phage tail family protein | - |
| CSC56_RS04145 () | 788106..791075 | - | 2970 | WP_031927510.1 | terminase | - |
| CSC56_RS04150 () | 791078..791419 | - | 342 | WP_050482623.1 | hypothetical protein | - |
| CSC56_RS04155 () | 791440..791934 | - | 495 | WP_103152043.1 | hypothetical protein | - |
| CSC56_RS04160 () | 791996..792556 | - | 561 | WP_000046067.1 | hypothetical protein | - |
| CSC56_RS04165 () | 792543..792980 | - | 438 | WP_015978307.1 | DUF3168 domain-containing protein | - |
| CSC56_RS04170 () | 792993..793406 | - | 414 | WP_001151332.1 | HK97 gp10 family phage protein | - |
| CSC56_RS04175 () | 793393..793728 | - | 336 | WP_070992111.1 | phage head closure protein | - |
| CSC56_RS04180 () | 793721..794035 | - | 315 | WP_015978284.1 | phage head-tail connector protein | - |
| CSC56_RS04185 () | 794035..794361 | - | 327 | WP_070992110.1 | Rho termination factor N-terminal domain-containing protein | - |
| CSC56_RS04190 () | 794378..795190 | - | 813 | WP_070992109.1 | major capsid protein | - |
| CSC56_RS04195 () | 795207..795797 | - | 591 | WP_070992108.1 | phage scaffolding protein | - |
| CSC56_RS04200 () | 795902..796108 | - | 207 | WP_000346033.1 | hypothetical protein | - |
| CSC56_RS04205 () | 796110..797093 | - | 984 | WP_049886451.1 | phage head morphogenesis protein | - |
| CSC56_RS04210 () | 797032..798450 | - | 1419 | WP_176430434.1 | phage portal protein | - |
| CSC56_RS04215 () | 798464..799672 | - | 1209 | WP_070992107.1 | PBSX family phage terminase large subunit | - |
| CSC56_RS14695 () | 799665..800159 | - | 495 | WP_000594082.1 | terminase | - |
| CSC56_RS04230 () | 800514..800915 | - | 402 | WP_000286968.1 | hypothetical protein | - |
| CSC56_RS04235 () | 800916..801089 | - | 174 | WP_064140002.1 | transcriptional activator RinB | - |
| CSC56_RS04240 () | 801086..801292 | - | 207 | WP_000195791.1 | DUF1381 domain-containing protein | - |
| CSC56_RS04245 () | 801289..801534 | - | 246 | WP_001282070.1 | hypothetical protein | - |
| CSC56_RS04250 () | 801571..802104 | - | 534 | WP_070992105.1 | dUTP pyrophosphatase | - |
| CSC56_RS04255 () | 802097..802345 | - | 249 | WP_070992104.1 | DUF1024 family protein | - |
| CSC56_RS04260 () | 802338..802613 | - | 276 | WP_015978314.1 | hypothetical protein | - |
| CSC56_RS04265 () | 802613..803017 | - | 405 | WP_015978309.1 | hypothetical protein | - |
| CSC56_RS04270 () | 803031..803273 | - | 243 | WP_000131387.1 | phi PVL orf 51-like protein | - |
| CSC56_RS04275 () | 803277..803633 | - | 357 | WP_000029376.1 | hypothetical protein | - |
| CSC56_RS04280 () | 803761..804066 | - | 306 | WP_000101252.1 | hypothetical protein | - |
| CSC56_RS04285 () | 804067..804252 | - | 186 | WP_001187243.1 | DUF3113 family protein | - |
| CSC56_RS04290 () | 804257..804661 | - | 405 | WP_000049794.1 | DUF1064 domain-containing protein | - |
| CSC56_RS04295 () | 804671..804892 | - | 222 | WP_001123664.1 | DUF3269 family protein | - |
| CSC56_RS04300 () | 804895..805110 | - | 216 | WP_001024401.1 | hypothetical protein | - |
| CSC56_RS04305 () | 805107..806348 | - | 1242 | WP_070992102.1 | AAA family ATPase | - |
| CSC56_RS04310 () | 806345..806701 | - | 357 | Protein_777 | hypothetical protein | - |
| CSC56_RS04315 () | 806701..807510 | - | 810 | WP_070033532.1 | phage replisome organizer N-terminal domain-containing protein | - |
| CSC56_RS04320 () | 807482..808177 | - | 696 | WP_070992101.1 | hypothetical protein | - |
| CSC56_RS04325 () | 808189..808623 | - | 435 | WP_031897944.1 | single-stranded DNA-binding protein | - |
| CSC56_RS04330 () | 808623..809246 | - | 624 | WP_000139725.1 | DUF1071 domain-containing protein | - |
| CSC56_RS04335 () | 809239..809460 | - | 222 | WP_000815403.1 | DUF2483 family protein | - |
| CSC56_RS04340 () | 809470..809730 | - | 261 | WP_000291068.1 | DUF1108 family protein | - |
| CSC56_RS04345 () | 809822..809983 | - | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| CSC56_RS04350 () | 809976..810197 | - | 222 | WP_000594789.1 | hypothetical protein | - |
| CSC56_RS04355 () | 810268..810921 | + | 654 | WP_015978329.1 | hypothetical protein | - |
| CSC56_RS04360 () | 810931..811074 | - | 144 | WP_015978350.1 | hypothetical protein | - |
| CSC56_RS04365 () | 811090..811842 | - | 753 | WP_070992099.1 | phage antirepressor KilAC domain-containing protein | - |
| CSC56_RS04370 () | 811844..812029 | - | 186 | WP_000933365.1 | helix-turn-helix transcriptional regulator | - |
| CSC56_RS04375 () | 812475..812957 | + | 483 | WP_070992098.1 | hypothetical protein | - |
| CSC56_RS04380 () | 813058..813237 | - | 180 | WP_000438352.1 | hypothetical protein | - |
| CSC56_RS04385 () | 813251..813487 | - | 237 | WP_001121116.1 | helix-turn-helix domain-containing protein | - |
| CSC56_RS04390 () | 813639..813953 | + | 315 | WP_000333630.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| CSC56_RS04395 () | 813966..814427 | + | 462 | WP_000525004.1 | hypothetical protein | Toxin Detail |
| CSC56_RS04400 () | 814611..815048 | + | 438 | WP_015977901.1 | DUF4231 domain-containing protein | - |
| CSC56_RS04405 () | 815042..815449 | + | 408 | WP_015977903.1 | TIR domain-containing protein | - |
| CSC56_RS04410 () | 815446..815643 | - | 198 | WP_000074681.1 | hypothetical protein | - |
| CSC56_RS04415 () | 815756..816805 | + | 1050 | WP_001145728.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| CSC56_RS04420 () | 816873..818270 | - | 1398 | WP_001074405.1 | Fe-S cluster assembly protein SufB | - |
| CSC56_RS04425 () | 818421..818885 | - | 465 | WP_001010508.1 | SUF system NifU family Fe-S cluster assembly protein | - |
| CSC56_RS04430 () | 818875..820125 | - | 1251 | WP_001006456.1 | cysteine desulfurase | - |
| CSC56_RS04435 () | 820231..821538 | - | 1308 | WP_070992096.1 | Fe-S cluster assembly protein SufD | - |
| CSC56_RS04440 () | 821636..822397 | - | 762 | WP_000168845.1 | Fe-S cluster assembly ATPase SufC | - |
| CSC56_RS04445 () | 822725..823576 | + | 852 | WP_001183846.1 | DUF368 domain-containing protein | - |
| CSC56_RS04450 () | 823810..824004 | - | 195 | WP_000752917.1 | CsbD family protein | - |
| CSC56_RS04455 () | 824355..825176 | - | 822 | WP_000732319.1 | hypothetical protein | VF |
| CSC56_RS04460 () | 825194..825889 | - | 696 | WP_000520233.1 | ABC transporter permease | - |
| CSC56_RS04465 () | 825882..826907 | - | 1026 | WP_000571205.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| CSC56_RS04470 () | 827157..827453 | - | 297 | WP_001065802.1 | thioredoxin family protein | - |
| CSC56_RS04475 () | 827446..827832 | - | 387 | WP_001018963.1 | toprim domain-containing protein | - |
| CSC56_RS04485 () | 828383..829261 | - | 879 | WP_001796505.1 | DUF1963 domain-containing protein | - |
| CSC56_RS04495 () | 829439..829819 | - | 381 | WP_000290492.1 | glycine cleavage system protein GcvH | - |
| CSC56_RS04500 () | 829977..830333 | - | 357 | WP_000589550.1 | arsenate reductase family protein | - |
| CSC56_RS04505 () | 830477..830797 | + | 321 | WP_001147956.1 | thioredoxin family protein | - |
| CSC56_RS04510 () | 830947..831486 | - | 540 | WP_000422908.1 | nitroreductase | - |
| CSC56_RS04515 () | 831569..832285 | - | 717 | WP_000150033.1 | type I 3-dehydroquinate dehydratase | - |
| CSC56_RS04520 () | 832433..832855 | + | 423 | WP_000974451.1 | organic hydroperoxide resistance protein | - |
| CSC56_RS04525 () | 833254..833748 | + | 495 | WP_000569884.1 | GNAT family N-acetyltransferase | - |
| CSC56_RS04530 () | 833904..834521 | + | 618 | WP_000255550.1 | LysE/ArgO family amino acid transporter | - |
| CSC56_RS04535 () | 834594..835175 | - | 582 | WP_001140696.1 | phosphoglycerate mutase family protein | - |
| CSC56_RS04540 () | 835399..835635 | + | 237 | WP_000368687.1 | hypothetical protein | - |
| CSC56_RS04545 () | 835632..835835 | - | 204 | WP_000145160.1 | sterile alpha motif-like domain-containing protein | - |
| CSC56_RS04550 () | 836176..836436 | + | 261 | WP_001059690.1 | hypothetical protein | Antitoxin Detail |
| CSC56_RS04555 () | 836465..836653 | + | 189 | WP_000052076.1 | hypothetical protein | Toxin Detail |
| CSC56_RS04560 () | 836841..837410 | + | 570 | WP_001106662.1 | hypothetical protein | - |
| CSC56_RS04565 () | 837498..837770 | + | 273 | WP_001004400.1 | hypothetical protein | - |
| CSC56_RS04570 () | 837843..838061 | + | 219 | WP_000005884.1 | hypothetical protein | - |
| CSC56_RS04575 () | 838558..838758 | - | 201 | WP_001059082.1 | cold-shock protein | - |
| CSC56_RS04580 () | 839115..839801 | - | 687 | WP_001622483.1 | thermonuclease family protein | - |
| CSC56_RS04585 () | 840142..840663 | - | 522 | WP_000824479.1 | hypothetical protein | VF |
| CSC56_RS04590 () | 840999..842024 | - | 1026 | WP_000727726.1 | extracellular matrix protein-binding adhesin Emp | - |
| CSC56_RS04595 () | 842375..843910 | - | 1536 | WP_103152042.1 | hypothetical protein | VF |
| CSC56_RS04600 () | 844131..847052 | - | 2922 | WP_072468881.1 | MSCRAMM family adhesin clumping factor ClfA | - |
| CSC56_RS04605 () | 847316..847846 | - | 531 | WP_001167163.1 | N-acetyltransferase | - |
| CSC56_RS04610 () | 847985..848506 | - | 522 | WP_000608189.1 | hypothetical protein | - |
| CSC56_RS04615 () | 848514..848669 | - | 156 | WP_072468882.1 | hypothetical protein | - |
| CSC56_RS04620 () | 849105..849833 | + | 729 | WP_001806213.1 | DUF5067 domain-containing protein | - |
| CSC56_RS04625 () | 850118..850732 | - | 615 | WP_000999093.1 | stage II sporulation protein M | - |
| CSC56_RS04630 () | 851573..852295 | + | 723 | WP_000746595.1 | hypothetical protein | VF |
| CSC56_RS04635 () | 852462..853262 | - | 801 | WP_000278088.1 | hypothetical protein | VF |
| CSC56_RS04640 () | 854050..854610 | + | 561 | WP_001035616.1 | DUF4888 domain-containing protein | - |
| CSC56_RS04645 () | 855487..856191 | + | 705 | WP_054194594.1 | hypothetical protein | VF |
| CSC56_RS04650 () | 856346..856915 | - | 570 | WP_001293088.1 | terminase small subunit | - |
| CSC56_RS04655 () | 856912..857253 | - | 342 | WP_000358778.1 | hypothetical protein | - |
| CSC56_RS04660 () | 857256..857783 | - | 528 | WP_031875775.1 | spore coat protein | - |
| CSC56_RS04665 () | 857834..858052 | - | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| CSC56_RS04670 () | 858070..858648 | - | 579 | WP_000846282.1 | hypothetical protein | - |
| CSC56_RS04675 () | 858660..859001 | - | 342 | WP_001190612.1 | hypothetical protein | - |
| CSC56_RS04680 () | 859451..860092 | - | 642 | WP_054194595.1 | pathogenicity island protein | - |
| CSC56_RS04685 () | 860089..860373 | - | 285 | WP_000998182.1 | hypothetical protein | - |
| CSC56_RS04690 () | 860375..860737 | - | 363 | WP_001039168.1 | hypothetical protein | - |
| CSC56_RS04700 () | 861023..862492 | - | 1470 | WP_103152041.1 | virulence-associated E family protein | - |
| CSC56_RS04705 () | 862509..863378 | - | 870 | WP_001002687.1 | primase alpha helix C-terminal domain-containing protein | - |
| CSC56_RS04710 () | 863466..863759 | - | 294 | WP_001103953.1 | DUF1474 family protein | - |
| CSC56_RS04715 () | 863760..864170 | - | 411 | WP_000850930.1 | hypothetical protein | - |
| CSC56_RS14700 () | 864172..864309 | - | 138 | WP_000800860.1 | hypothetical protein | - |
| CSC56_RS04720 () | 864322..864540 | - | 219 | WP_000163542.1 | helix-turn-helix domain-containing protein | - |
| CSC56_RS04725 () | 864728..865657 | + | 930 | WP_000272128.1 | helix-turn-helix domain-containing protein | - |
| CSC56_RS04730 () | 865647..866756 | + | 1110 | WP_025174292.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| CSC56_RS04740 () | 867320..867784 | - | 465 | WP_001085185.1 | SsrA-binding protein SmpB | - |
| CSC56_RS04745 () | 867806..870178 | - | 2373 | WP_110183619.1 | ribonuclease R | - |
| CSC56_RS04750 () | 870212..870952 | - | 741 | WP_001165966.1 | carboxylesterase | - |
| CSC56_RS04755 () | 871081..871314 | - | 234 | WP_000556760.1 | preprotein translocase subunit SecG | - |
| CSC56_RS04760 () | 871381..871839 | - | 459 | WP_000785252.1 | hypothetical protein | - |
| CSC56_RS04765 () | 872178..873482 | - | 1305 | WP_001121760.1 | phosphopyruvate hydratase | - |
| CSC56_RS04770 () | 873612..875129 | - | 1518 | WP_001085498.1 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|