MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 97481 bp
Accession: NZ_CP029423 Location: 2057242..2154722 Organism: Clostridioides difficile R20291 Replicon: chromosome
Accession: NZ_CP029423 Location: 2057242..2154722 Organism: Clostridioides difficile R20291 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF27147_RS09615 () | 2052732..2053982 | + | 1251 | Protein_1810 | DUF11 domain-containing protein | - |
| CDIF27147_RS09620 () | 2054292..2054573 | + | 282 | WP_009891898.1 | hypothetical protein | - |
| CDIF27147_RS09625 () | 2054659..2055681 | + | 1023 | WP_009891897.1 | hypothetical protein | - |
| CDIF27147_RS09630 () | 2055683..2056168 | + | 486 | WP_009891896.1 | PcfB family protein | - |
| CDIF27147_RS09635 () | 2056165..2057169 | + | 1005 | WP_104732836.1 | type IV secretory system conjugative DNA transfer family protein | - |
| CDIF27147_RS09640 () | 2057242..2059122 | + | 1881 | WP_012816185.1 | hypothetical protein ; Integrase | Integrase |
| CDIF27147_RS09645 () | 2059149..2059502 | + | 354 | WP_012816186.1 | TnpV protein | - |
| CDIF27147_RS09650 () | 2059519..2059818 | + | 300 | WP_004612693.1 | hypothetical protein | - |
| CDIF27147_RS09655 () | 2059846..2060214 | - | 369 | WP_012816188.1 | helix-turn-helix transcriptional regulator | - |
| CDIF27147_RS09660 () | 2060359..2060547 | + | 189 | WP_007884040.1 | helix-turn-helix domain-containing protein | - |
| CDIF27147_RS09665 () | 2060540..2061232 | + | 693 | WP_024738629.1 | Transcriptional regulatory protein WalR | VF |
| CDIF27147_RS09670 () | 2061238..2062155 | + | 918 | WP_012816190.1 | HAMP domain-containing histidine kinase | - |
| CDIF27147_RS09675 () | 2062290..2063216 | + | 927 | WP_104732837.1 | Daunorubicin/doxorubicin resistance ATP-binding protein DrrA | VF |
| CDIF27147_RS09680 () | 2063209..2063994 | + | 786 | WP_012816192.1 | ABC transporter permease | - |
| CDIF27147_RS09685 () | 2063997..2064776 | + | 780 | WP_002594767.1 | ABC transporter permease | - |
| CDIF27147_RS09690 () | 2064784..2065245 | + | 462 | WP_012816193.1 | hypothetical protein | - |
| CDIF27147_RS09695 () | 2065690..2066103 | + | 414 | WP_012816194.1 | hypothetical protein | - |
| CDIF27147_RS09700 () | 2066205..2066657 | + | 453 | WP_012816195.1 | sigma-24 (feci) | - |
| CDIF27147_RS09705 () | 2066668..2067129 | + | 462 | WP_009296689.1 | sigma-70 family RNA polymerase sigma factor | - |
| CDIF27147_RS09710 () | 2067158..2067448 | + | 291 | WP_024739841.1 | DUF3847 domain-containing protein | - |
| CDIF27147_RS09715 () | 2067635..2069080 | + | 1446 | WP_104732839.1 | MobA/MobL family protein | - |
| CDIF27147_RS09720 () | 2069188..2069478 | - | 291 | WP_002596328.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| CDIF27147_RS09725 () | 2069475..2069753 | - | 279 | WP_005924829.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| CDIF27147_RS09730 () | 2069880..2070278 | + | 399 | WP_012816198.1 | cysteine-rich VLP domain-containing protein | - |
| CDIF27147_RS09735 () | 2070392..2071126 | + | 735 | WP_012816199.1 | phage replisome organizer N-terminal domain-containing protein | - |
| CDIF27147_RS09740 () | 2071123..2071986 | + | 864 | WP_104732840.1 | IS21 family transposase ISBlo1 | Transposase |
| CDIF27147_RS09745 () | 2072030..2072224 | + | 195 | WP_104732841.1 | transposon-encoded TnpW family protein | - |
| CDIF27147_RS09750 () | 2072302..2072667 | + | 366 | WP_104732842.1 | hypothetical protein | - |
| CDIF27147_RS09755 () | 2072762..2073388 | + | 627 | Protein_1838 | TraM recognition domain-containing protein | - |
| CDIF27147_RS09760 () | 2073441..2073818 | + | 378 | WP_009891894.1 | TnpV protein | - |
| CDIF27147_RS09765 () | 2073832..2074113 | + | 282 | WP_009891893.1 | hypothetical protein | - |
| CDIF27147_RS09770 () | 2074235..2075083 | - | 849 | WP_009891891.1 | helix-turn-helix domain-containing protein | - |
| CDIF27147_RS09775 () | 2075449..2075742 | + | 294 | WP_021407349.1 | hypothetical protein | - |
| CDIF27147_RS09780 () | 2075726..2076031 | + | 306 | WP_074014306.1 | molecular chaperone | - |
| CDIF27147_RS09785 () | 2076459..2077703 | + | 1245 | WP_021422885.1 | hypothetical protein | - |
| CDIF27147_RS09790 () | 2077719..2078405 | + | 687 | WP_074014307.1 | DNA primase | - |
| CDIF27147_RS09795 () | 2078365..2079723 | + | 1359 | WP_009891879.1 | virulence-associated E family protein | - |
| CDIF27147_RS09800 () | 2079991..2080158 | + | 168 | WP_009891878.1 | hypothetical protein | - |
| CDIF27147_RS09805 () | 2080231..2081883 | + | 1653 | WP_012816204.1 | hypothetical protein ; Integrase | Integrase |
| CDIF27147_RS09810 () | 2081931..2082386 | - | 456 | WP_009901261.1 | hypothetical protein | - |
| CDIF27147_RS09815 () | 2082410..2084083 | - | 1674 | WP_009893984.1 | hypothetical protein ; Integrase | Integrase |
| CDIF27147_RS09820 () | 2084161..2084334 | - | 174 | WP_002604472.1 | transposon-encoded TnpW family protein | - |
| CDIF27147_RS09825 () | 2084793..2085035 | - | 243 | WP_002604473.1 | helix-turn-helix domain-containing protein | - |
| CDIF27147_RS09830 () | 2085019..2085456 | - | 438 | WP_002604474.1 | sigma-70 family RNA polymerase sigma factor | - |
| CDIF27147_RS09835 () | 2085930..2086913 | - | 984 | WP_002584956.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| CDIF27147_RS09840 () | 2086930..2087115 | - | 186 | WP_003431289.1 | hypothetical protein | - |
| CDIF27147_RS09845 () | 2087726..2087887 | + | 162 | Protein_1856 | helix-turn-helix transcriptional regulator | - |
| CDIF27147_RS09850 () | 2088158..2088868 | - | 711 | WP_009891854.1 | LytTR family DNA-binding domain-containing protein | - |
| CDIF27147_RS09855 () | 2088873..2089046 | - | 174 | WP_002576203.1 | helix-turn-helix domain-containing protein | - |
| CDIF27147_RS09860 () | 2089188..2089421 | + | 234 | Protein_1859 | conjugal transfer protein TraG | - |
| CDIF27147_RS09865 () | 2089585..2089896 | + | 312 | WP_009891846.1 | single-stranded DNA-binding protein | - |
| CDIF27147_RS09870 () | 2089900..2090058 | + | 159 | WP_042520385.1 | conjugal transfer protein | - |
| CDIF27147_RS09875 () | 2090214..2090486 | + | 273 | WP_009274451.1 | helix-turn-helix domain-containing protein | - |
| CDIF27147_RS09880 () | 2090446..2090823 | + | 378 | WP_009274452.1 | TnpV protein | - |
| CDIF27147_RS09885 () | 2090940..2091374 | + | 435 | WP_009274453.1 | MarR family transcriptional regulator | - |
| CDIF27147_RS09890 () | 2091367..2092668 | + | 1302 | WP_012816206.1 | multidrug transporter MatE | - |
| CDIF27147_RS09895 () | 2092762..2093568 | - | 807 | WP_012816207.1 | helix-turn-helix domain-containing protein | - |
| CDIF27147_RS09900 () | 2094052..2094240 | + | 189 | WP_055058411.1 | hypothetical protein | - |
| CDIF27147_RS09905 () | 2094237..2094578 | + | 342 | WP_003020305.1 | DeoR family transcriptional regulator | - |
| CDIF27147_RS09910 () | 2094571..2094867 | + | 297 | WP_012816208.1 | DUF3847 domain-containing protein | - |
| CDIF27147_RS09915 () | 2095167..2095310 | + | 144 | WP_009274458.1 | hypothetical protein | - |
| CDIF27147_RS09920 () | 2095498..2097078 | + | 1581 | WP_042520383.1 | MobA/MobL family protein | - |
| CDIF27147_RS09925 () | 2097144..2097788 | + | 645 | WP_042520382.1 | hypothetical protein | - |
| CDIF27147_RS09930 () | 2097757..2099094 | + | 1338 | WP_042520381.1 | virulence-associated E family protein | - |
| CDIF27147_RS09935 () | 2099336..2099533 | + | 198 | WP_004612761.1 | hypothetical protein | - |
| CDIF27147_RS09940 () | 2099534..2101204 | + | 1671 | WP_012816213.1 | hypothetical protein ; Integrase | Integrase |
| CDIF27147_RS09945 () | 2101295..2101378 | + | 84 | Protein_1876 | hypothetical protein | - |
| CDIF27147_RS09950 () | 2101398..2102261 | + | 864 | WP_009893980.1 | hypothetical protein | - |
| CDIF27147_RS09955 () | 2102279..2102539 | + | 261 | WP_009888259.1 | hypothetical protein | - |
| CDIF27147_RS09960 () | 2102543..2102932 | + | 390 | WP_009888260.1 | PrgI family protein | - |
| CDIF27147_RS09965 () | 2102844..2105273 | + | 2430 | WP_009888261.1 | ATP-binding protein | - |
| CDIF27147_RS09970 () | 2105277..2107409 | + | 2133 | WP_009888262.1 | CHAP domain-containing protein | - |
| CDIF27147_RS09975 () | 2107421..2107660 | + | 240 | WP_009888263.1 | hypothetical protein | - |
| CDIF27147_RS09980 () | 2107635..2109176 | + | 1542 | WP_009893977.1 | DUF4366 domain-containing protein | - |
| CDIF27147_RS09985 () | 2109271..2110977 | + | 1707 | WP_009893975.1 | DNA topoisomerase 3 | - |
| CDIF27147_RS09990 () | 2111062..2111865 | + | 804 | WP_004804477.1 | KilA-N domain-containing protein | - |
| CDIF27147_RS09995 () | 2111948..2120677 | + | 8730 | WP_009893973.1 | DEAD/DEAH box helicase family protein | - |
| CDIF27147_RS10000 () | 2120720..2121379 | + | 660 | WP_010826392.1 | hypothetical protein | - |
| CDIF27147_RS10005 () | 2121519..2121749 | + | 231 | WP_009889816.1 | helix-turn-helix transcriptional regulator | - |
| CDIF27147_RS10010 () | 2121952..2123574 | + | 1623 | WP_009889819.1 | AAA family ATPase | - |
| CDIF27147_RS10015 () | 2123571..2124638 | + | 1068 | WP_009889821.1 | UvrD-helicase domain-containing protein | - |
| CDIF27147_RS10020 () | 2124666..2125127 | + | 462 | WP_009889823.1 | hypothetical protein | - |
| CDIF27147_RS10025 () | 2125117..2125923 | + | 807 | WP_009889825.1 | PQQ-like beta-propeller repeat protein | - |
| CDIF27147_RS10030 () | 2125959..2127290 | - | 1332 | WP_009889829.1 | relaxase/mobilization nuclease domain-containing protein | - |
| CDIF27147_RS10035 () | 2127296..2127646 | - | 351 | WP_009889831.1 | plasmid mobilization relaxosome protein MobC | - |
| CDIF27147_RS10040 () | 2127980..2129137 | + | 1158 | WP_009893966.1 | TlpA family protein disulfide reductase | - |
| CDIF27147_RS10045 () | 2129304..2130194 | + | 891 | WP_009889834.1 | 4Fe-4S binding protein | - |
| CDIF27147_RS10050 () | 2130213..2131490 | + | 1278 | WP_009889836.1 | ABC transporter permease | - |
| CDIF27147_RS10055 () | 2131500..2132156 | + | 657 | WP_003426165.1 | putative ABC transporter ATP-binding protein | VF |
| CDIF27147_RS10060 () | 2132156..2133532 | + | 1377 | WP_009893965.1 | ABC transporter permease | - |
| CDIF27147_RS10065 () | 2133630..2134283 | + | 654 | WP_009889840.1 | Transcriptional regulatory protein QseB | VF |
| CDIF27147_RS10070 () | 2134280..2135599 | + | 1320 | WP_009889841.1 | HAMP domain-containing histidine kinase | - |
| CDIF27147_RS10075 () | 2136123..2136533 | + | 411 | WP_003426191.1 | sigma-70 family RNA polymerase sigma factor | - |
| CDIF27147_RS10080 () | 2137022..2137174 | + | 153 | WP_003426199.1 | hypothetical protein | - |
| CDIF27147_RS10085 () | 2137275..2138924 | + | 1650 | Protein_1904 | Tn3 family transposase TnpR_ISAcsp1 | Transposase |
| CDIF27147_RS10090 () | 2138949..2142197 | + | 3249 | Protein_1905 | Tn3 family transposase TnpR_ISAcsp1 | Transposase |
| CDIF27147_RS10095 () | 2142654..2143001 | + | 348 | WP_003435528.1 | cupin domain-containing protein | - |
| CDIF27147_RS10100 () | 2143151..2144200 | - | 1050 | WP_003423932.1 | ABC transporter substrate-binding protein | - |
| CDIF27147_RS10105 () | 2144586..2145320 | + | 735 | WP_009889846.1 | class I SAM-dependent methyltransferase | - |
| CDIF27147_RS10110 () | 2145462..2145953 | - | 492 | WP_003428667.1 | prolyl-tRNA synthetase associated domain-containing protein | - |
| CDIF27147_RS10115 () | 2146302..2146685 | + | 384 | WP_009889847.1 | hypothetical protein | - |
| CDIF27147_RS10120 () | 2147191..2147574 | + | 384 | WP_003428669.1 | YtxH domain-containing protein | - |
| CDIF27147_RS10125 () | 2147576..2147926 | + | 351 | WP_003428670.1 | hypothetical protein | - |
| CDIF27147_RS10130 () | 2148020..2148478 | - | 459 | WP_003435468.1 | hypothetical protein | - |
| CDIF27147_RS10135 () | 2148523..2149311 | - | 789 | WP_003435466.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF27147_RS10140 () | 2149450..2149887 | - | 438 | WP_009889849.1 | dCMP deaminase | - |
| CDIF27147_RS10145 () | 2150709..2151218 | + | 510 | WP_009889853.1 | HTH-type transcriptional regulator ImmR | VF |
| CDIF27147_RS10150 () | 2152129..2152929 | - | 801 | WP_003435446.1 | ABC transporter permease | - |
| CDIF27147_RS10155 () | 2153124..2154722 | - | 1599 | WP_009893325.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| CDIF27147_RS10160 () | 2155050..2155226 | + | 177 | WP_009889863.1 | hypothetical protein | - |
| CDIF27147_RS10165 () | 2155400..2156530 | + | 1131 | WP_009893327.1 | iron-containing alcohol dehydrogenase | - |
| CDIF27147_RS10170 () | 2156771..2157121 | + | 351 | WP_009893329.1 | BMC domain-containing protein | - |
| CDIF27147_RS10175 () | 2157129..2157578 | + | 450 | WP_009889866.1 | EutP/PduV family microcompartment system protein | - |
| CDIF27147_RS10180 () | 2157680..2158255 | + | 576 | WP_003423977.1 | response regulator | - |
| CDIF27147_RS10185 () | 2158248..2159657 | + | 1410 | WP_009889869.1 | histidine kinase N-terminal domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Integrative and Conjugative Element | TA10095 | NC_013316 | 2043677..2141157 | 0 |